ERROR) syntax error
atomselect: cannot parse selection text: all and not ()
can't read "babbeo": no such variable
residues.dat
file5
can't read "noah": no such variable
Info) VMD for LINUXAMD64, version 1.9.1 (February 1, 2012)
Info) Exiting normally.
vmd > Could not find/open font when opening font "arial", using internal non-scalable font
rm: cannot remove `res-rmsd.tcl': No such file or directory
mv: cannot stat `*-rmsd.dat': No such file or directory

 MD analysis completed in background
 The RMSD per residue plots are stored in Analysis_Dyna/Images

 Now Analysis_MD.sh will terminate
 If MD was OK, run new2mins.sh to go on, otherwise re-run DynIt.sh with a different setup