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misnomer001

Sarazm doesnt need Khvalynsk

misnomer001
Aug 19th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. fstatsname: fstatsa5.txt
  5. popleft: left
  6. popright: right
  7. details: YES
  8. allsnps: YES
  9. inbreed: NO
  10. oldallsnps: NO
  11. ## qpAdm version: 1520
  12. seed: 2120674970
  13. inbreed set NO
  14. inbreed set NO
  15.  
  16. left pops:
  17. Tajikistan_C_Sarazm
  18. Iran_GanjDareh_N
  19. Turkey_N
  20. CHG_Kotias
  21. Tarim_EMBA1
  22. Russia_Khvalynsk_Eneolithic
  23.  
  24. right pops:
  25. Mbuti.DG
  26. ONG.SG
  27. CHG_Satsurblia
  28. EHG
  29. Serbia_IronGates_Mesolithic
  30. WSHG
  31. Russia_Shamanka_Eneolithic.SG
  32. PPN
  33.  
  34. codimension 1
  35. f4info:
  36. f4rank: 4 dof: 3 chisq: 6.341 tail: 0.0961351352 dofdiff: 5 chisqdiff: -6.341 taildiff: 1
  37. B:
  38. scale 1.000 1.000 1.000 1.000
  39. ONG.SG 0.439 -0.286 -0.152 0.598
  40. CHG_Satsurblia -0.226 -0.238 2.500 -0.119
  41. EHG 1.571 0.407 0.136 -1.151
  42. Serbia_IronGates_Mesolithic 0.731 1.575 0.216 -1.256
  43. WSHG 1.770 -0.695 -0.325 0.288
  44. Russia_Shamanka_Eneolithic.SG 0.784 -0.507 -0.267 1.337
  45. PPN -0.095 1.864 -0.696 1.361
  46. A:
  47. scale 187.206 467.352 535.202 1115.156
  48. Iran_GanjDareh_N -0.577 -0.264 -0.376 -0.532
  49. Turkey_N -0.306 1.863 -0.377 0.670
  50. CHG_Kotias -0.203 0.468 2.137 1.080
  51. Tarim_EMBA1 1.698 -0.654 -0.367 0.568
  52. Russia_Khvalynsk_Eneolithic 1.284 0.902 0.118 -1.667
  53.  
  54.  
  55. full rank
  56. f4info:
  57. f4rank: 5 dof: 0 chisq: 0.000 tail: 1 dofdiff: 3 chisqdiff: 6.341 taildiff: 0.0961351352
  58. B:
  59. scale 325.770 221.734 243.094 107.590 131.733
  60. ONG.SG -0.531 -0.323 -0.215 0.507 0.189
  61. CHG_Satsurblia -0.302 -0.519 2.418 -0.378 -0.162
  62. EHG -1.453 -0.327 -0.378 1.425 1.801
  63. Serbia_IronGates_Mesolithic -0.889 0.946 0.136 0.399 1.327
  64. WSHG -1.738 -1.210 -0.943 1.847 1.339
  65. Russia_Shamanka_Eneolithic.SG -0.779 -0.454 -0.191 0.971 0.357
  66. PPN -0.313 1.988 0.146 -0.242 0.115
  67. A:
  68. scale 2.236 2.236 2.236 2.236 2.236
  69. Iran_GanjDareh_N 2.236 0.000 0.000 0.000 0.000
  70. Turkey_N 0.000 2.236 0.000 0.000 0.000
  71. CHG_Kotias 0.000 0.000 2.236 0.000 0.000
  72. Tarim_EMBA1 0.000 0.000 0.000 2.236 0.000
  73. Russia_Khvalynsk_Eneolithic 0.000 0.000 0.000 0.000 2.236
  74.  
  75.  
  76. best coefficients: 0.537 0.096 0.143 0.196 0.027
  77. totmean: 0.537 0.096 0.143 0.196 0.027
  78. boot mean: 0.538 0.096 0.143 0.196 0.027
  79. std. errors: 0.070 0.037 0.047 0.030 0.036
  80.  
  81. error covariance (* 1,000,000)
  82. 4843 -1953 -2832 -1500 1442
  83. -1953 1348 742 803 -941
  84. -2832 742 2184 727 -821
  85. -1500 803 727 925 -955
  86. 1442 -941 -821 -955 1274
  87.  
  88.  
  89. summ: Tajikistan_C_Sarazm 5 0.096135 0.538 0.096 0.143 0.196 0.027 4843 -1953 -2832 -1500 1442 ...
  90. 1348 742 803 -941 2184 ...
  91. 727 -821 925 -955 1274
  92.  
  93. fixed pat wt dof chisq tail prob
  94. 00000 0 3 6.341 0.0961351 0.537 0.096 0.143 0.196 0.027
  95. 00001 1 4 7.450 0.113922 0.505 0.115 0.164 0.216 0.000
  96. 00010 1 4 38.990 7.00052e-08 0.910 -0.094 -0.040 0.000 0.224 infeasible
  97. 00100 1 4 13.432 0.00934621 0.731 0.042 0.000 0.141 0.086
  98. 01000 1 4 11.886 0.018222 0.679 0.000 0.092 0.135 0.094
  99. 10000 1 4 63.988 4.20283e-13 0.000 0.321 0.467 0.384 -0.172 infeasible
  100. 00011 2 5 292.744 0 3.461 -0.183 -2.278 0.000 0.000 infeasible
  101. 00101 2 5 19.509 0.00154423 0.693 0.105 0.000 0.202 0.000
  102. 00110 2 5 38.880 2.51026e-07 0.865 -0.088 0.000 0.000 0.223 infeasible
  103. 01001 2 5 24.897 0.00014589 0.667 0.000 0.139 0.194 0.000
  104. 01010 2 5 48.502 2.80479e-09 0.835 0.000 -0.045 0.000 0.210 infeasible
  105. 01100 2 5 15.324 0.0090635 0.771 0.000 0.000 0.117 0.112
  106. 10001 2 5 84.161 1.12865e-16 0.000 0.237 0.483 0.281 0.000
  107. 10010 2 5 241.024 0 0.000 0.009 0.741 0.000 0.250
  108. 10100 2 5 399.642 0 0.000 0.762 0.000 0.639 -0.401 infeasible
  109. 11000 2 5 154.237 0 0.000 0.000 0.743 0.242 0.015
  110. 00111 3 6 162.296 0 1.056 -0.056 0.000 0.000 0.000 infeasible
  111. 01011 3 6 479.990 0 -2.358 0.000 3.358 0.000 0.000 infeasible
  112. 01101 3 6 33.710 7.65348e-06 0.816 0.000 0.000 0.184 0.000
  113. 01110 3 6 49.335 6.38918e-09 0.789 0.000 0.000 0.000 0.211
  114. 10011 3 6 323.330 0 0.000 0.003 0.997 0.000 0.000
  115. 10101 3 6 493.492 0 0.000 0.610 0.000 0.390 0.000
  116. 10110 3 6 830.832 0 0.000 0.533 0.000 0.000 0.467
  117. 11001 3 6 152.389 2.418e-30 0.000 0.000 0.749 0.251 0.000
  118. 11010 3 6 242.329 0 0.000 0.000 0.749 0.000 0.251
  119. 11100 3 6 969.912 0 0.000 0.000 0.000 -1.040 2.040 infeasible
  120. 01111 4 7 166.433 0 1.000 0.000 0.000 0.000 0.000
  121. 10111 4 7 1367.584 0 0.000 1.000 0.000 0.000 0.000
  122. 11011 4 7 322.592 0 0.000 0.000 1.000 0.000 0.000
  123. 11101 4 7 2340.985 0 0.000 0.000 0.000 1.000 0.000
  124. 11110 4 7 1266.504 0 0.000 0.000 0.000 0.000 1.000
  125. best pat: 00000 0.0961351 - -
  126. best pat: 01000 0.018222 chi(nested): 5.544 p-value for nested model: 0.0185403
  127. best pat: 01100 0.0090635 chi(nested): 3.438 p-value for nested model: 0.0636948
  128. best pat: 01101 7.65348e-06 chi(nested): 18.386 p-value for nested model: 1.80413e-05
  129. best pat: 01111 1.41767e-32 chi(nested): 132.723 p-value for nested model: 1.0394e-30
  130.  
  131. coeffs: 0.537 0.096 0.143 0.196 0.027
  132.  
  133. ## dscore:: f_4(Base, Fit, Rbase, right2)
  134. ## genstat:: f_4(Base, Fit, right1, right2)
  135.  
  136. details: Iran_GanjDareh_N ONG.SG -0.001629 -4.187219
  137. details: Turkey_N ONG.SG -0.001459 -3.977802
  138. details: CHG_Kotias ONG.SG -0.000883 -1.842168
  139. details: Tarim_EMBA1 ONG.SG 0.004708 10.881208
  140. details: Russia_Khvalynsk_Eneolithic ONG.SG 0.001437 3.053591
  141. dscore: ONG.SG f4: -0.000178 Z: -0.514341
  142.  
  143. details: Iran_GanjDareh_N CHG_Satsurblia -0.000927 -1.794488
  144. details: Turkey_N CHG_Satsurblia -0.002341 -4.781652
  145. details: CHG_Kotias CHG_Satsurblia 0.009947 13.564333
  146. details: Tarim_EMBA1 CHG_Satsurblia -0.003514 -6.178974
  147. details: Russia_Khvalynsk_Eneolithic CHG_Satsurblia -0.001227 -1.900715
  148. dscore: CHG_Satsurblia f4: -0.000019 Z: -0.041031
  149.  
  150. details: Iran_GanjDareh_N EHG -0.004460 -10.471297
  151. details: Turkey_N EHG -0.001473 -3.588823
  152. details: CHG_Kotias EHG -0.001554 -2.762854
  153. details: Tarim_EMBA1 EHG 0.013242 27.167673
  154. details: Russia_Khvalynsk_Eneolithic EHG 0.013674 26.968919
  155. dscore: EHG f4: 0.000211 Z: 0.563086
  156.  
  157. details: Iran_GanjDareh_N Serbia_IronGates_Mesolithic -0.002728 -7.767171
  158. details: Turkey_N Serbia_IronGates_Mesolithic 0.004265 12.676267
  159. details: CHG_Kotias Serbia_IronGates_Mesolithic 0.000559 1.202887
  160. details: Tarim_EMBA1 Serbia_IronGates_Mesolithic 0.003709 9.644544
  161. details: Russia_Khvalynsk_Eneolithic Serbia_IronGates_Mesolithic 0.010074 22.888130
  162. dscore: Serbia_IronGates_Mesolithic f4: 0.000026 Z: 0.085786
  163.  
  164. details: Iran_GanjDareh_N WSHG -0.005336 -11.740527
  165. details: Turkey_N WSHG -0.005459 -13.121728
  166. details: CHG_Kotias WSHG -0.003877 -6.862797
  167. details: Tarim_EMBA1 WSHG 0.017163 33.538529
  168. details: Russia_Khvalynsk_Eneolithic WSHG 0.010161 18.822033
  169. dscore: WSHG f4: -0.000301 Z: -0.747121
  170.  
  171. details: Iran_GanjDareh_N Russia_Shamanka_Eneolithic.SG -0.002392 -6.656109
  172. details: Turkey_N Russia_Shamanka_Eneolithic.SG -0.002046 -5.932842
  173. details: CHG_Kotias Russia_Shamanka_Eneolithic.SG -0.000787 -1.705634
  174. details: Tarim_EMBA1 Russia_Shamanka_Eneolithic.SG 0.009024 21.672681
  175. details: Russia_Khvalynsk_Eneolithic Russia_Shamanka_Eneolithic.SG 0.002707 5.954837
  176. dscore: Russia_Shamanka_Eneolithic.SG f4: 0.000251 Z: 0.778074
  177.  
  178. details: Iran_GanjDareh_N PPN -0.000961 -2.545556
  179. details: Turkey_N PPN 0.008967 23.761214
  180. details: CHG_Kotias PPN 0.000599 1.182331
  181. details: Tarim_EMBA1 PPN -0.002252 -5.136358
  182. details: Russia_Khvalynsk_Eneolithic PPN 0.000872 1.797855
  183. dscore: PPN f4: 0.000013 Z: 0.038075
  184.  
  185. gendstat: Mbuti.DG ONG.SG -0.514
  186. gendstat: Mbuti.DG CHG_Satsurblia -0.041
  187. gendstat: Mbuti.DG EHG 0.563
  188. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic 0.086
  189. gendstat: Mbuti.DG WSHG -0.747
  190. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG 0.778
  191. gendstat: Mbuti.DG PPN 0.038
  192. gendstat: ONG.SG CHG_Satsurblia 0.343
  193. gendstat: ONG.SG EHG 1.035
  194. gendstat: ONG.SG Serbia_IronGates_Mesolithic 0.615
  195. gendstat: ONG.SG WSHG -0.314
  196. gendstat: ONG.SG Russia_Shamanka_Eneolithic.SG 1.619
  197. gendstat: ONG.SG PPN 0.471
  198. gendstat: CHG_Satsurblia EHG 0.486
  199. gendstat: CHG_Satsurblia Serbia_IronGates_Mesolithic 0.105
  200. gendstat: CHG_Satsurblia WSHG -0.576
  201. gendstat: CHG_Satsurblia Russia_Shamanka_Eneolithic.SG 0.617
  202. gendstat: CHG_Satsurblia PPN 0.067
  203. gendstat: EHG Serbia_IronGates_Mesolithic -0.669
  204. gendstat: EHG WSHG -1.619
  205. gendstat: EHG Russia_Shamanka_Eneolithic.SG 0.118
  206. gendstat: EHG PPN -0.513
  207. gendstat: Serbia_IronGates_Mesolithic WSHG -1.006
  208. gendstat: Serbia_IronGates_Mesolithic Russia_Shamanka_Eneolithic.SG 0.790
  209. gendstat: Serbia_IronGates_Mesolithic PPN -0.042
  210. gendstat: WSHG Russia_Shamanka_Eneolithic.SG 1.597
  211. gendstat: WSHG PPN 0.727
  212. gendstat: Russia_Shamanka_Eneolithic.SG PPN -0.646
  213.  
  214. ##end of qpAdm: 23.412 seconds cpu 1.053 Mbytes in use
  215.  
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