qpAdm: parameter file: parqpadm ### THE INPUT PARAMETERS ##PARAMETER NAME: VALUE fstatsname: fstatsa5.txt popleft: left popright: right details: YES allsnps: YES inbreed: NO oldallsnps: NO ## qpAdm version: 1520 seed: 2120674970 inbreed set NO inbreed set NO left pops: Tajikistan_C_Sarazm Iran_GanjDareh_N Turkey_N CHG_Kotias Tarim_EMBA1 Russia_Khvalynsk_Eneolithic right pops: Mbuti.DG ONG.SG CHG_Satsurblia EHG Serbia_IronGates_Mesolithic WSHG Russia_Shamanka_Eneolithic.SG PPN codimension 1 f4info: f4rank: 4 dof: 3 chisq: 6.341 tail: 0.0961351352 dofdiff: 5 chisqdiff: -6.341 taildiff: 1 B: scale 1.000 1.000 1.000 1.000 ONG.SG 0.439 -0.286 -0.152 0.598 CHG_Satsurblia -0.226 -0.238 2.500 -0.119 EHG 1.571 0.407 0.136 -1.151 Serbia_IronGates_Mesolithic 0.731 1.575 0.216 -1.256 WSHG 1.770 -0.695 -0.325 0.288 Russia_Shamanka_Eneolithic.SG 0.784 -0.507 -0.267 1.337 PPN -0.095 1.864 -0.696 1.361 A: scale 187.206 467.352 535.202 1115.156 Iran_GanjDareh_N -0.577 -0.264 -0.376 -0.532 Turkey_N -0.306 1.863 -0.377 0.670 CHG_Kotias -0.203 0.468 2.137 1.080 Tarim_EMBA1 1.698 -0.654 -0.367 0.568 Russia_Khvalynsk_Eneolithic 1.284 0.902 0.118 -1.667 full rank f4info: f4rank: 5 dof: 0 chisq: 0.000 tail: 1 dofdiff: 3 chisqdiff: 6.341 taildiff: 0.0961351352 B: scale 325.770 221.734 243.094 107.590 131.733 ONG.SG -0.531 -0.323 -0.215 0.507 0.189 CHG_Satsurblia -0.302 -0.519 2.418 -0.378 -0.162 EHG -1.453 -0.327 -0.378 1.425 1.801 Serbia_IronGates_Mesolithic -0.889 0.946 0.136 0.399 1.327 WSHG -1.738 -1.210 -0.943 1.847 1.339 Russia_Shamanka_Eneolithic.SG -0.779 -0.454 -0.191 0.971 0.357 PPN -0.313 1.988 0.146 -0.242 0.115 A: scale 2.236 2.236 2.236 2.236 2.236 Iran_GanjDareh_N 2.236 0.000 0.000 0.000 0.000 Turkey_N 0.000 2.236 0.000 0.000 0.000 CHG_Kotias 0.000 0.000 2.236 0.000 0.000 Tarim_EMBA1 0.000 0.000 0.000 2.236 0.000 Russia_Khvalynsk_Eneolithic 0.000 0.000 0.000 0.000 2.236 best coefficients: 0.537 0.096 0.143 0.196 0.027 totmean: 0.537 0.096 0.143 0.196 0.027 boot mean: 0.538 0.096 0.143 0.196 0.027 std. errors: 0.070 0.037 0.047 0.030 0.036 error covariance (* 1,000,000) 4843 -1953 -2832 -1500 1442 -1953 1348 742 803 -941 -2832 742 2184 727 -821 -1500 803 727 925 -955 1442 -941 -821 -955 1274 summ: Tajikistan_C_Sarazm 5 0.096135 0.538 0.096 0.143 0.196 0.027 4843 -1953 -2832 -1500 1442 ... 1348 742 803 -941 2184 ... 727 -821 925 -955 1274 fixed pat wt dof chisq tail prob 00000 0 3 6.341 0.0961351 0.537 0.096 0.143 0.196 0.027 00001 1 4 7.450 0.113922 0.505 0.115 0.164 0.216 0.000 00010 1 4 38.990 7.00052e-08 0.910 -0.094 -0.040 0.000 0.224 infeasible 00100 1 4 13.432 0.00934621 0.731 0.042 0.000 0.141 0.086 01000 1 4 11.886 0.018222 0.679 0.000 0.092 0.135 0.094 10000 1 4 63.988 4.20283e-13 0.000 0.321 0.467 0.384 -0.172 infeasible 00011 2 5 292.744 0 3.461 -0.183 -2.278 0.000 0.000 infeasible 00101 2 5 19.509 0.00154423 0.693 0.105 0.000 0.202 0.000 00110 2 5 38.880 2.51026e-07 0.865 -0.088 0.000 0.000 0.223 infeasible 01001 2 5 24.897 0.00014589 0.667 0.000 0.139 0.194 0.000 01010 2 5 48.502 2.80479e-09 0.835 0.000 -0.045 0.000 0.210 infeasible 01100 2 5 15.324 0.0090635 0.771 0.000 0.000 0.117 0.112 10001 2 5 84.161 1.12865e-16 0.000 0.237 0.483 0.281 0.000 10010 2 5 241.024 0 0.000 0.009 0.741 0.000 0.250 10100 2 5 399.642 0 0.000 0.762 0.000 0.639 -0.401 infeasible 11000 2 5 154.237 0 0.000 0.000 0.743 0.242 0.015 00111 3 6 162.296 0 1.056 -0.056 0.000 0.000 0.000 infeasible 01011 3 6 479.990 0 -2.358 0.000 3.358 0.000 0.000 infeasible 01101 3 6 33.710 7.65348e-06 0.816 0.000 0.000 0.184 0.000 01110 3 6 49.335 6.38918e-09 0.789 0.000 0.000 0.000 0.211 10011 3 6 323.330 0 0.000 0.003 0.997 0.000 0.000 10101 3 6 493.492 0 0.000 0.610 0.000 0.390 0.000 10110 3 6 830.832 0 0.000 0.533 0.000 0.000 0.467 11001 3 6 152.389 2.418e-30 0.000 0.000 0.749 0.251 0.000 11010 3 6 242.329 0 0.000 0.000 0.749 0.000 0.251 11100 3 6 969.912 0 0.000 0.000 0.000 -1.040 2.040 infeasible 01111 4 7 166.433 0 1.000 0.000 0.000 0.000 0.000 10111 4 7 1367.584 0 0.000 1.000 0.000 0.000 0.000 11011 4 7 322.592 0 0.000 0.000 1.000 0.000 0.000 11101 4 7 2340.985 0 0.000 0.000 0.000 1.000 0.000 11110 4 7 1266.504 0 0.000 0.000 0.000 0.000 1.000 best pat: 00000 0.0961351 - - best pat: 01000 0.018222 chi(nested): 5.544 p-value for nested model: 0.0185403 best pat: 01100 0.0090635 chi(nested): 3.438 p-value for nested model: 0.0636948 best pat: 01101 7.65348e-06 chi(nested): 18.386 p-value for nested model: 1.80413e-05 best pat: 01111 1.41767e-32 chi(nested): 132.723 p-value for nested model: 1.0394e-30 coeffs: 0.537 0.096 0.143 0.196 0.027 ## dscore:: f_4(Base, Fit, Rbase, right2) ## genstat:: f_4(Base, Fit, right1, right2) details: Iran_GanjDareh_N ONG.SG -0.001629 -4.187219 details: Turkey_N ONG.SG -0.001459 -3.977802 details: CHG_Kotias ONG.SG -0.000883 -1.842168 details: Tarim_EMBA1 ONG.SG 0.004708 10.881208 details: Russia_Khvalynsk_Eneolithic ONG.SG 0.001437 3.053591 dscore: ONG.SG f4: -0.000178 Z: -0.514341 details: Iran_GanjDareh_N CHG_Satsurblia -0.000927 -1.794488 details: Turkey_N CHG_Satsurblia -0.002341 -4.781652 details: CHG_Kotias CHG_Satsurblia 0.009947 13.564333 details: Tarim_EMBA1 CHG_Satsurblia -0.003514 -6.178974 details: Russia_Khvalynsk_Eneolithic CHG_Satsurblia -0.001227 -1.900715 dscore: CHG_Satsurblia f4: -0.000019 Z: -0.041031 details: Iran_GanjDareh_N EHG -0.004460 -10.471297 details: Turkey_N EHG -0.001473 -3.588823 details: CHG_Kotias EHG -0.001554 -2.762854 details: Tarim_EMBA1 EHG 0.013242 27.167673 details: Russia_Khvalynsk_Eneolithic EHG 0.013674 26.968919 dscore: EHG f4: 0.000211 Z: 0.563086 details: Iran_GanjDareh_N Serbia_IronGates_Mesolithic -0.002728 -7.767171 details: Turkey_N Serbia_IronGates_Mesolithic 0.004265 12.676267 details: CHG_Kotias Serbia_IronGates_Mesolithic 0.000559 1.202887 details: Tarim_EMBA1 Serbia_IronGates_Mesolithic 0.003709 9.644544 details: Russia_Khvalynsk_Eneolithic Serbia_IronGates_Mesolithic 0.010074 22.888130 dscore: Serbia_IronGates_Mesolithic f4: 0.000026 Z: 0.085786 details: Iran_GanjDareh_N WSHG -0.005336 -11.740527 details: Turkey_N WSHG -0.005459 -13.121728 details: CHG_Kotias WSHG -0.003877 -6.862797 details: Tarim_EMBA1 WSHG 0.017163 33.538529 details: Russia_Khvalynsk_Eneolithic WSHG 0.010161 18.822033 dscore: WSHG f4: -0.000301 Z: -0.747121 details: Iran_GanjDareh_N Russia_Shamanka_Eneolithic.SG -0.002392 -6.656109 details: Turkey_N Russia_Shamanka_Eneolithic.SG -0.002046 -5.932842 details: CHG_Kotias Russia_Shamanka_Eneolithic.SG -0.000787 -1.705634 details: Tarim_EMBA1 Russia_Shamanka_Eneolithic.SG 0.009024 21.672681 details: Russia_Khvalynsk_Eneolithic Russia_Shamanka_Eneolithic.SG 0.002707 5.954837 dscore: Russia_Shamanka_Eneolithic.SG f4: 0.000251 Z: 0.778074 details: Iran_GanjDareh_N PPN -0.000961 -2.545556 details: Turkey_N PPN 0.008967 23.761214 details: CHG_Kotias PPN 0.000599 1.182331 details: Tarim_EMBA1 PPN -0.002252 -5.136358 details: Russia_Khvalynsk_Eneolithic PPN 0.000872 1.797855 dscore: PPN f4: 0.000013 Z: 0.038075 gendstat: Mbuti.DG ONG.SG -0.514 gendstat: Mbuti.DG CHG_Satsurblia -0.041 gendstat: Mbuti.DG EHG 0.563 gendstat: Mbuti.DG Serbia_IronGates_Mesolithic 0.086 gendstat: Mbuti.DG WSHG -0.747 gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG 0.778 gendstat: Mbuti.DG PPN 0.038 gendstat: ONG.SG CHG_Satsurblia 0.343 gendstat: ONG.SG EHG 1.035 gendstat: ONG.SG Serbia_IronGates_Mesolithic 0.615 gendstat: ONG.SG WSHG -0.314 gendstat: ONG.SG Russia_Shamanka_Eneolithic.SG 1.619 gendstat: ONG.SG PPN 0.471 gendstat: CHG_Satsurblia EHG 0.486 gendstat: CHG_Satsurblia Serbia_IronGates_Mesolithic 0.105 gendstat: CHG_Satsurblia WSHG -0.576 gendstat: CHG_Satsurblia Russia_Shamanka_Eneolithic.SG 0.617 gendstat: CHG_Satsurblia PPN 0.067 gendstat: EHG Serbia_IronGates_Mesolithic -0.669 gendstat: EHG WSHG -1.619 gendstat: EHG Russia_Shamanka_Eneolithic.SG 0.118 gendstat: EHG PPN -0.513 gendstat: Serbia_IronGates_Mesolithic WSHG -1.006 gendstat: Serbia_IronGates_Mesolithic Russia_Shamanka_Eneolithic.SG 0.790 gendstat: Serbia_IronGates_Mesolithic PPN -0.042 gendstat: WSHG Russia_Shamanka_Eneolithic.SG 1.597 gendstat: WSHG PPN 0.727 gendstat: Russia_Shamanka_Eneolithic.SG PPN -0.646 ##end of qpAdm: 23.412 seconds cpu 1.053 Mbytes in use