gui_replica.m [v2latest]

function varargout = gui_replica(varargin)
% gui_replica MATLAB code for gui_replica.fig
%      gui_replica, by itself, creates a new gui_replica or raises the existing
%      singleton*.
%
%      H = gui_replica returns the handle to a new gui_replica or the handle to
%      the existing singleton*.
%
%      gui_replica('CALLBACK',hObject,eventData,handles,...) calls the local
%      function named CALLBACK in gui_replica.M with the given input arguments.
%
%      gui_replica('Property','Value',...) creates a new gui_replica or raises the
%      existing singleton*.  Starting from the left, property value pairs are
%      applied to the GUI before gui_replica_OpeningFcn gets called.  An
%      unrecognized property name or invalid value makes property application
%      stop.  All inputs are passed to gui_replica_OpeningFcn via varargin.
%
%      *See GUI Options on GUIDE's Tools menu.  Choose "GUI allows only one
%      instance to run (singleton)".
%
% See also: GUIDE, GUIDATA, GUIHANDLES

% Edit the above text to modify the response to help gui_replica

% Last Modified by GUIDE v2.5 27-Dec-2017 16:45:15

% Begin initialization code - DO NOT EDIT
gui_Singleton = 1;
gui_State = struct('gui_Name',       mfilename, ...
                   'gui_Singleton',  gui_Singleton, ...
                   'gui_OpeningFcn', @gui_replica_OpeningFcn, ...
                   'gui_OutputFcn',  @gui_replica_OutputFcn, ...
                   'gui_LayoutFcn',  [] , ...
                   'gui_Callback',   []);
if nargin && ischar(varargin{1})
    gui_State.gui_Callback = str2func(varargin{1});
end

if nargout
    [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
else
    gui_mainfcn(gui_State, varargin{:});
end
% End initialization code - DO NOT EDIT


% --- Executes just before gui_replica is made visible.
function gui_replica_OpeningFcn(hObject, eventdata, handles, varargin)
% This function has no output args, see OutputFcn.
% hObject    handle to figure
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)
% varargin   command line arguments to gui_replica (see VARARGIN)




% img = imread('logo-tbl.png');
% axes(handles.axes4)
% imshow(img)
% axis off
% axis image

% Choose default command line output for gui_replica
handles.output = hObject;

% Update handles structure
guidata(hObject, handles);

% UIWAIT makes gui_replica wait for user response (see UIRESUME)
% uiwait(handles.figure1);


% --- Outputs from this function are returned to the command line.
function varargout = gui_replica_OutputFcn(hObject, eventdata, handles)
% varargout  cell array for returning output args (see VARARGOUT);
% hObject    handle to figure
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Get default command line output from handles structure
varargout{1} = handles.output;


% --- Executes on button press in pushbutton1.
function pushbutton1_Callback(hObject, eventdata, handles)
% hObject    handle to pushbutton1 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)









% --- Executes on button press in pushbutton2.
function pushbutton2_Callback(hObject, eventdata, handles)
% hObject    handle to pushbutton2 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)
filePath = uigetdir;
imgFilePath = dir([filePath '/*.jpg']);
imgFilesNo = size(imgFilePath,1);
imgName = imgFilePath(1).name;

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
handles.filePath = filePath;
handles.imgFolderInfo = imgFilePath;
handles.imgName = imgName;
handles.imgOrder = 1;
handles.imgTotal = imgFilesNo;
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
handles.lcrop = 0;
handles.rcrop = 0;
handles.tcrop = 0;
handles.bcrop = 0;
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
handles.g1Val = 2;
handles.g2Val = 4;
handles.medVal = 20;
handles.diff = 2;
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
guidata(hObject,handles);

set(handles.imgOrderLabel, 'String', handles.imgOrder);
set(handles.imgTotalLabel, 'String', imgFilesNo);

img = imread([filePath,'\',imgName]);
axes(handles.axes1)
%imshow(img)
axis off
axis image
imshow(img);

% imgName = imgFilePath(1).name;
[H,W] = size(img);
img3d = zeros(H,W,imgFilesNo);
handles.imgHeight = H;
handles.imgWidth = W;
guidata(hObject,handles);

for step = 1:imgFilesNo
    file_name = imgFilePath(step).name;
%     [H,W] = size(img);
    img = imread([filePath,'\',file_name]);
    img3d(:,:,step) = img;
    fprintf('%d\n', step);
end

avg = mean(img3d,1);
avg = squeeze(avg);
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
axes(handles.axes3)
axis image
imshow(avg,[]);
hold on

x = [1 W];
y = [handles.imgOrder handles.imgOrder];
handles.lineRef  = line(x,y,'Color','red','LineStyle','--','LineWidth',2);

guidata(hObject,handles);

hold off

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
[img_crp,H,W] = crop(img,H,W,handles.lcrop,handles.rcrop,handles.tcrop,handles.bcrop);

img_gau = imgaussfilt(img_crp,handles.g1Val);
img_diff_bef = filt_diff(img_gau,H,W,handles.diff);
[img_rl_bef,ind_rl_bef,avg_rl_bef] = find_srf(img_diff_bef,H,W); %img_rl

img_med = medfilt2(img_gau,[handles.medVal*2 handles.medVal*2],'symmetric');
img_med = filt_diff(img_med,H,W,handles.diff);

[img_idl,ind_idl,~] = find_srf(img_med,H,W);
mrg = 60;
[img_flt,H,W] = flatten(img_crp,H,W,ind_idl,mrg);

img_gau = imgaussfilt(img_flt,handles.g2Val);
img_diff = filt_diff(img_gau,H,W,handles.diff);

[img_rl,ind_rl,avg_rl] = find_srf(img_diff,H,W); %img_rl
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
axes(handles.imgOutputAxes)
axis image
imshow(img_rl,[]);
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%


% [H,W,I] = size(img3d);

% avg = zeros(W,imgFilesNo);
% for i = 1:W
%     for j = 1:imgFilesNo
%         avg(i,j) = sum(double(img3d(:,i,j)))/imgFilesNo;
%     end
% end



%     fprintf('%d\n', step);

% OpenfilePath = 'C:\Users\TBL\Documents\MATLAB\Yujin_Data\20170404_Amore_Replica\Eye-rim\5-Y';

% max_step = 994;
% avg_rough = zeros(1,max_step);
% rms_rough = zeros(1,max_step);
% max_rough = zeros(1,max_step);
% total_rough = zeros(1,max_step);
%
% % full_path = handles.filename;
% diff = 2;
% l_crop = 156;
% r_crop = 10;
% t_crop = 45;
% b_crop = 5;

% for step = 1:max_step
%     offset = 6;
%     num = sprintf('%d',step+offset);
%     file_name = strcat('bb _',num,'.jpg');
%     img0 = imread([OpenfilePath,'\',file_name]);
%     img = rgb2gray(img0);
%     [H,W] = size(img);
%     img = flip(img, 1);
%     [img_crop,H_crop,W_crop] = crop(img,H,W,l_crop,r_crop,t_crop,b_crop);
%     img_filt = imgaussfilt(img_crop,6);
%     img_diff = filt_diff(img_filt,H_crop,W_crop,diff);
%
%     %ref_line to ref+line_surf
%     [img_line_surf,ind_line_surf,avg_index,ref_line_surf] = line_surf2(img_diff,H_crop,W_crop,diff);
%     img3d(:,:,step) = img_line_surf;
%
%     [peak_height_front,valley_depth_front] = peak_valley(ind_line_surf,avg_index,W_crop);
%     [avg_rough_front(step),rms_rough_front(step),max_rough_front(step),total_rough_front(step)] = roughness(peak_height_front,valley_depth_front);
%
%     fprintf('%d\n', step);
%
% end

% avg_roughness = zeros(1,W_crop);
% rms_roughness = zeros(1,W_crop);
% max_roughness = zeros(1,W_crop);
% total_roughness = zeros(1,W_crop);

% for ii = 1:W_crop
%     s = img3d(:,ii,:);
%     s = squeeze(s);
%     [Hs,Ws] = size(s);
%     [row,col] = find(s);
%
%     avg_index_side = round(mean(row));
%     ref_line = zeros(Hs,Ws);
%     ref_line(avg_index_side,:) = 255;
%
%     abs_roughness = zeros(1,Ws);
%
%     [peak_height_side,valley_depth_side] = peak_valley(row,avg_index_side,W_crop);
%     [avg_rough_side(ii),rms_rough_side(ii),max_rough_side(ii),total_rough_side(ii)] = roughness(peak_height_side,valley_depth_side);
%
%     fprintf('%d\n', ii);
%
% end



%mean_avg_rough_front = mean(avg_rough_front)
% mean_rms_rough_front = mean(rms_rough_front)
% mean_max_rough_front = mean(max_rough_front)
% mean_total_rough_front = mean(total_rough_front)
% disp('Front view roughness');
%
% text_avg_rough_front = sprintf('%.2f', mean(avg_rough_front));
% text_rms_rough_front = sprintf('%.2f', mean(rms_rough_front));
% text_max_rough_front = sprintf('%.2f', mean(max_rough_front));
% text_total_rough_front = sprintf('%.2f', mean(total_rough_front));
%
% set(handles.text13, 'String', text_avg_rough_front);
% set(handles.text14, 'String', text_rms_rough_front);
% set(handles.text15, 'String', text_max_rough_front);
% set(handles.text16, 'String', text_total_rough_front);
%
%
% disp('Side view roughness');

% text_avg_rough = sprintf('%.2f', mean(avg_rough_side));
% text_rms_rough = sprintf('%.2f', mean(rms_rough_side));
% text_max_rough = sprintf('%.2f', mean(max_rough_side));
% text_total_rough = sprintf('%.2f', mean(total_rough_side));
%
% set(handles.text25, 'String', text_avg_rough);
% set(handles.text26, 'String', text_rms_rough);
% set(handles.text29, 'String', text_max_rough);
% set(handles.text30, 'String', text_total_rough);
%
%
%
%
% axes(handles.axes1)
% %imshow(img)
% axis off
% axis image
% imshow(img0);
%
%
% r1 = img_crop;
% g1 = r1;
% b1 = r1;
% r1(img_line_surf > 0) = 255;
% g1(img_line_surf > 0) = 0; %%
% b1(ref_line_surf > 0) = 255; %
%
% axes(handles.axes3)
% %imshow(img)
% axis off
% axis image
% imshow(cat(3,r1,g1,b1),[]);






% figure('Name','Wrinkle')
% imshow();

% imshow(img_crop,[], 'parent',handle.axes1)
% imshow(cat(3,r1,g1,b1),[], 'parent',handle.axes3)

% %% Roughness Values
% text_avg_rough = sprintf('%.2f', avg_rough);
% text_rms_rough = sprintf('%.2f', rms_rough);
% text_max_rough = sprintf('%.2f', max_rough);
% text_total_rough = sprintf('%.2f', total_rough);
%
% set(handles.text13, 'String', text_avg_rough);
% set(handles.text14, 'String', text_rms_rough);
% set(handles.text15, 'String', text_max_rough);
% set(handles.text16, 'String', text_total_rough);






% img = imread(full_path);
% [H,W] = size(img);
% %% Parameters setup
% l_crop = 18;
% r_crop = 18;
% t_crop = 12;
% b_crop = 10;
% diff = 2;
% med = 80;
% wind_size = 40;
% threshold = 30;
% %% Preprocessing
% [img_crop,H_crop,W_crop] = crop(img,H,W,l_crop,r_crop,t_crop,b_crop);
% img_filt = imgaussfilt(img_crop,7);
% %% Wrinkle surface
% img_diff = filt_diff(img_filt,H_crop,W_crop,diff);
% [img_line_wrinkle,ind_line_wrinkle,avg_index,ref_line] = line_surf1(img_diff,H_crop,W_crop,diff);
%
% [peak_height,valley_depth] = peak_valley(ind_line_wrinkle,avg_index,W_crop);
% [avg_rough,rms_rough,max_rough,total_rough] = roughness(peak_height,valley_depth);
%
% %% Roughness Values
% text_avg_rough = sprintf('%.2f', avg_rough);
% text_rms_rough = sprintf('%.2f', rms_rough);
% text_max_rough = sprintf('%.2f', max_rough);
% text_total_rough = sprintf('%.2f', total_rough);
%
% set(handles.text13, 'String', text_avg_rough);
% set(handles.text14, 'String', text_rms_rough);
% set(handles.text15, 'String', text_max_rough);
% set(handles.text16, 'String', text_total_rough);



% --- Executes on button press in pushbutton3.
function pushbutton3_Callback(hObject, eventdata, handles)
% hObject    handle to pushbutton3 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)


% --- Executes on button press in pushbutton4.
function pushbutton4_Callback(hObject, eventdata, handles)
% hObject    handle to pushbutton4 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)



% --- Executes on button press in pushbutton5.
function pushbutton5_Callback(hObject, eventdata, handles)
% hObject    handle to pushbutton5 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)


% --- Executes on button press in pushbutton6.
function pushbutton6_Callback(hObject, eventdata, handles)
% hObject    handle to pushbutton6 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)


% --- Executes on button press in pushbutton7.
function pushbutton7_Callback(hObject, eventdata, handles)
% hObject    handle to pushbutton7 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)


% --- Executes during object creation, after setting all properties.
function text21_CreateFcn(hObject, eventdata, handles)
% hObject    handle to text21 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called


% --- Executes on button press in btnNext.
function btnNext_Callback(hObject, eventdata, handles)
% hObject    handle to btnNext (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

if handles.imgOrder < handles.imgTotal
    handles.imgOrder = handles.imgOrder + 1;
    guidata(hObject,handles);
    set(handles.imgOrderLabel, 'String', handles.imgOrder);


    filePath = handles.filePath;
    imgFilePath = handles.imgFolderInfo;
    imgName = imgFilePath(handles.imgOrder).name;

    img = imread([filePath,'\',imgName]);
    axes(handles.axes1)
    axis off
    axis image
    imshow(img);





    delete(handles.lineRef);

    axes(handles.axes3)
%     axis image
%     imshow(avg,[]);
%     hold on

    x = [1 handles.imgWidth];
    y = [handles.imgOrder handles.imgOrder];


    %handles.lineRef = c1;


    handles.lineRef = line(x,y,'Color','red','LineStyle','--','LineWidth',2);

    %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
    handles.lcrop = 0;
    handles.rcrop = 0;
    handles.tcrop = 0;
    handles.bcrop = 0;
    %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
    handles.g1Val = 2;
    handles.g2Val = 4;
    handles.medVal = 20;
    handles.diff = 2;
    %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    guidata(hObject,handles);

%     hold off

    [H,W] = size(img);

    [img_crp,H,W] = crop(img,H,W,handles.lcrop,handles.rcrop,handles.tcrop,handles.bcrop);

    img_gau = imgaussfilt(img_crp,handles.g1Val);
    img_diff_bef = filt_diff(img_gau,H,W,handles.diff);
    [img_rl_bef,ind_rl_bef,avg_rl_bef] = find_srf(img_diff_bef,H,W); %img_rl

    img_med = medfilt2(img_gau,[handles.medVal*2 handles.medVal*2],'symmetric');
    img_med = filt_diff(img_med,H,W,handles.diff);

    [img_idl,ind_idl,~] = find_srf(img_med,H,W);
    mrg = 60;
    [img_flt,H,W] = flatten(img_crp,H,W,ind_idl,mrg);

    img_gau = imgaussfilt(img_flt,handles.g2Val);
    img_diff = filt_diff(img_gau,H,W,handles.diff);

    [img_rl,ind_rl,avg_rl] = find_srf(img_diff,H,W); %img_rl
    %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
    axes(handles.imgOutputAxes)
    axis image
    imshow(img_rl,[]);


end



















% save the changes to the structure



% handles.imgOrder = 1;
% handles.imgTotal = folderImgNo;
% guidata(hObject,handles);


% set(handles.imgTotalLabel, 'String', folderImgNo);




% --- Executes on button press in btnPrev.
function btnPrev_Callback(hObject, eventdata, handles)
% hObject    handle to btnPrev (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)
if handles.imgOrder > 1
    handles.imgOrder = handles.imgOrder - 1;
    guidata(hObject,handles);
    set(handles.imgOrderLabel, 'String', handles.imgOrder);


    filePath = handles.filePath;
    imgFilePath = handles.imgFolderInfo;
    imgName = imgFilePath(handles.imgOrder).name;

    img = imread([filePath,'\',imgName]);
    axes(handles.axes1)
    axis off
    axis image
    imshow(img);



    delete(handles.lineRef);
    axes(handles.axes3)

    x = [1 handles.imgWidth];
    y = [handles.imgOrder handles.imgOrder];

    handles.lineRef = line(x,y,'Color','red','LineStyle','--','LineWidth',2);

    handles.lcrop = 0;
    handles.rcrop = 0;
    handles.tcrop = 0;
    handles.bcrop = 0;
    %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
    handles.g1Val = 2;
    handles.g2Val = 4;
    handles.medVal = 20;
    handles.diff = 2;
    %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    guidata(hObject,handles);



    [H,W] = size(img);

    [img_crp,H,W] = crop(img,H,W,handles.lcrop,handles.rcrop,handles.tcrop,handles.bcrop);

    img_gau = imgaussfilt(img_crp,handles.g1Val);
    img_diff_bef = filt_diff(img_gau,H,W,handles.diff);
    [img_rl_bef,ind_rl_bef,avg_rl_bef] = find_srf(img_diff_bef,H,W); %img_rl

    img_med = medfilt2(img_gau,[handles.medVal*2 handles.medVal*2],'symmetric');
    img_med = filt_diff(img_med,H,W,handles.diff);

    [img_idl,ind_idl,~] = find_srf(img_med,H,W);
    mrg = 60;
    [img_flt,H,W] = flatten(img_crp,H,W,ind_idl,mrg);

    img_gau = imgaussfilt(img_flt,handles.g2Val);
    img_diff = filt_diff(img_gau,H,W,handles.diff);

    [img_rl,ind_rl,avg_rl] = find_srf(img_diff,H,W); %img_rl
    %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
    axes(handles.imgOutputAxes)
    axis image
    imshow(img_rl,[]);

end


% --- Executes on slider movement.
function rcropSlider_Callback(hObject, eventdata, handles)
% hObject    handle to rcropSlider (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'Value') returns position of slider
%        get(hObject,'Min') and get(hObject,'Max') to determine range of slider
r_crop_normalized = get(handles.rcropSlider,'Value');

filePath = handles.filePath;
imgFilePath = handles.imgFolderInfo;
imgName = imgFilePath(handles.imgOrder).name;

img = imread([filePath,'\',imgName]);
[H,W] = size(img);

% l_crop = 0;
r_crop = r_crop_normalized*W;
% t_crop = 0;
% b_crop = 0;

handles.rcrop = r_crop;
guidata(hObject,handles);

[img_crp,H,W] = crop(img,H,W,int16(handles.lcrop),int16(handles.rcrop),int16(handles.tcrop),int16(handles.bcrop));

axes(handles.axes1)
axis off
axis image
imshow(img_crp);



[H,W] = size(img);

[img_crp,H,W] = crop(img,H,W,handles.lcrop,handles.rcrop,handles.tcrop,handles.bcrop);

img_gau = imgaussfilt(img_crp,handles.g1Val);
img_diff_bef = filt_diff(img_gau,H,W,handles.diff);
[img_rl_bef,ind_rl_bef,avg_rl_bef] = find_srf(img_diff_bef,H,W); %img_rl

img_med = medfilt2(img_gau,[handles.medVal*2 handles.medVal*2],'symmetric');
img_med = filt_diff(img_med,H,W,handles.diff);

[img_idl,ind_idl,~] = find_srf(img_med,H,W);
mrg = 60;
[img_flt,H,W] = flatten(img_crp,H,W,ind_idl,mrg);

img_gau = imgaussfilt(img_flt,handles.g2Val);
img_diff = filt_diff(img_gau,H,W,handles.diff);

[img_rl,ind_rl,avg_rl] = find_srf(img_diff,H,W); %img_rl
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
axes(handles.imgOutputAxes)
axis image
imshow(img_rl,[]);


% --- Executes during object creation, after setting all properties.
function rcropSlider_CreateFcn(hObject, eventdata, handles)
% hObject    handle to rcropSlider (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: slider controls usually have a light gray background.
if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor',[.9 .9 .9]);
end


% --- Executes on slider movement.
function lcropSlider_Callback(hObject, eventdata, handles)
% hObject    handle to lcropSlider (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'Value') returns position of slider
%        get(hObject,'Min') and get(hObject,'Max') to determine range of slider
l_crop_normalized = get(handles.lcropSlider,'Value')

filePath = handles.filePath;
imgFilePath = handles.imgFolderInfo;
imgName = imgFilePath(handles.imgOrder).name;

img = imread([filePath,'\',imgName]);
[H,W] = size(img);

l_crop = l_crop_normalized*W;
% r_crop = 0;
% t_crop = 0;
% b_crop = 0;

handles.lcrop = l_crop;
guidata(hObject,handles);

[img_crp,H,W] = crop(img,H,W,int16(handles.lcrop),int16(handles.rcrop),int16(handles.tcrop),int16(handles.bcrop));

axes(handles.axes1)
axis off
axis image
imshow(img_crp);






[H,W] = size(img);

[img_crp,H,W] = crop(img,H,W,handles.lcrop,handles.rcrop,handles.tcrop,handles.bcrop);

img_gau = imgaussfilt(img_crp,handles.g1Val);
img_diff_bef = filt_diff(img_gau,H,W,handles.diff);
[img_rl_bef,ind_rl_bef,avg_rl_bef] = find_srf(img_diff_bef,H,W); %img_rl

img_med = medfilt2(img_gau,[handles.medVal*2 handles.medVal*2],'symmetric');
img_med = filt_diff(img_med,H,W,handles.diff);

[img_idl,ind_idl,~] = find_srf(img_med,H,W);
mrg = 60;
[img_flt,H,W] = flatten(img_crp,H,W,ind_idl,mrg);

img_gau = imgaussfilt(img_flt,handles.g2Val);
img_diff = filt_diff(img_gau,H,W,handles.diff);

[img_rl,ind_rl,avg_rl] = find_srf(img_diff,H,W); %img_rl
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
axes(handles.imgOutputAxes)
axis image
imshow(img_rl,[]);



% --- Executes during object creation, after setting all properties.
function lcropSlider_CreateFcn(hObject, eventdata, handles)
% hObject    handle to lcropSlider (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: slider controls usually have a light gray background.
if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor',[.9 .9 .9]);
end


% --- Executes on slider movement.
function tcropSlider_Callback(hObject, eventdata, handles)
% hObject    handle to tcropSlider (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'Value') returns position of slider
%        get(hObject,'Min') and get(hObject,'Max') to determine range of slider
t_crop_normalized = get(handles.tcropSlider,'Value');

filePath = handles.filePath;
imgFilePath = handles.imgFolderInfo;
imgName = imgFilePath(handles.imgOrder).name;

img = imread([filePath,'\',imgName]);
[H,W] = size(img);


t_crop = t_crop_normalized*W;

handles.tcrop = t_crop;
guidata(hObject,handles);

[img_crp,H,W] = crop(img,H,W,int16(handles.lcrop),int16(handles.rcrop),int16(handles.tcrop),int16(handles.bcrop));

axes(handles.axes1)
axis off
axis image
imshow(img_crp);




[H,W] = size(img);

[img_crp,H,W] = crop(img,H,W,handles.lcrop,handles.rcrop,handles.tcrop,handles.bcrop);

img_gau = imgaussfilt(img_crp,handles.g1Val);
img_diff_bef = filt_diff(img_gau,H,W,handles.diff);
[img_rl_bef,ind_rl_bef,avg_rl_bef] = find_srf(img_diff_bef,H,W); %img_rl

img_med = medfilt2(img_gau,[handles.medVal*2 handles.medVal*2],'symmetric');
img_med = filt_diff(img_med,H,W,handles.diff);

[img_idl,ind_idl,~] = find_srf(img_med,H,W);
mrg = 60;
[img_flt,H,W] = flatten(img_crp,H,W,ind_idl,mrg);

img_gau = imgaussfilt(img_flt,handles.g2Val);
img_diff = filt_diff(img_gau,H,W,handles.diff);

[img_rl,ind_rl,avg_rl] = find_srf(img_diff,H,W); %img_rl
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
axes(handles.imgOutputAxes)
axis image
imshow(img_rl,[]);


% --- Executes during object creation, after setting all properties.
function tcropSlider_CreateFcn(hObject, eventdata, handles)
% hObject    handle to tcropSlider (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: slider controls usually have a light gray background.
if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor',[.9 .9 .9]);
end


% --- Executes on slider movement.
function bcropSlider_Callback(hObject, eventdata, handles)
% hObject    handle to bcropSlider (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'Value') returns position of slider
%        get(hObject,'Min') and get(hObject,'Max') to determine range of slider
b_crop_normalized = get(handles.bcropSlider,'Value');

filePath = handles.filePath;
imgFilePath = handles.imgFolderInfo;
imgName = imgFilePath(handles.imgOrder).name;

img = imread([filePath,'\',imgName]);
[H,W] = size(img);

% l_crop = 0;
% r_crop = 0;
% t_crop = 0;
b_crop = b_crop_normalized*W;

handles.bcrop = b_crop;
guidata(hObject,handles);

[img_crp,H,W] = crop(img,H,W,int16(handles.lcrop),int16(handles.rcrop),int16(handles.tcrop),int16(handles.bcrop));

axes(handles.axes1)
axis off
axis image
imshow(img_crp);



[H,W] = size(img);

[img_crp,H,W] = crop(img,H,W,handles.lcrop,handles.rcrop,handles.tcrop,handles.bcrop);

img_gau = imgaussfilt(img_crp,handles.g1Val);
img_diff_bef = filt_diff(img_gau,H,W,handles.diff);
[img_rl_bef,ind_rl_bef,avg_rl_bef] = find_srf(img_diff_bef,H,W); %img_rl

img_med = medfilt2(img_gau,[handles.medVal*2 handles.medVal*2],'symmetric');
img_med = filt_diff(img_med,H,W,handles.diff);

[img_idl,ind_idl,~] = find_srf(img_med,H,W);
mrg = 60;
[img_flt,H,W] = flatten(img_crp,H,W,ind_idl,mrg);

img_gau = imgaussfilt(img_flt,handles.g2Val);
img_diff = filt_diff(img_gau,H,W,handles.diff);

[img_rl,ind_rl,avg_rl] = find_srf(img_diff,H,W); %img_rl
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
axes(handles.imgOutputAxes)
axis image
imshow(img_rl,[]);



% --- Executes during object creation, after setting all properties.
function bcropSlider_CreateFcn(hObject, eventdata, handles)
% hObject    handle to bcropSlider (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: slider controls usually have a light gray background.
if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor',[.9 .9 .9]);
end


% --- Executes on slider movement.
function slider8_Callback(hObject, eventdata, handles)
% hObject    handle to slider8 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'Value') returns position of slider
%        get(hObject,'Min') and get(hObject,'Max') to determine range of slider


% --- Executes during object creation, after setting all properties.
function slider8_CreateFcn(hObject, eventdata, handles)
% hObject    handle to slider8 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: slider controls usually have a light gray background.
if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor',[.9 .9 .9]);
end


% --- Executes on slider movement.
function g1Slider_Callback(hObject, eventdata, handles)
% hObject    handle to g1Slider (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'Value') returns position of slider
%        get(hObject,'Min') and get(hObject,'Max') to determine range of slider
handles.g1Val = get(handles.g1Slider,'Value');
set(handles.g1ValLabel, 'String', handles.g1Val);
guidata(hObject,handles);

% filePath = handles.filePath;
imgFilePath = handles.imgFolderInfo;
imgName = imgFilePath(handles.imgOrder).name;

img = imread([handles.filePath,'\',imgName]);


[H,W] = size(img);

[img_crp,H,W] = crop(img,H,W,handles.lcrop,handles.rcrop,handles.tcrop,handles.bcrop);

img_gau = imgaussfilt(img_crp,handles.g1Val);
img_diff_bef = filt_diff(img_gau,H,W,handles.diff);
[img_rl_bef,ind_rl_bef,avg_rl_bef] = find_srf(img_diff_bef,H,W); %img_rl

img_med = medfilt2(img_gau,[handles.medVal*2 handles.medVal*2],'symmetric');
img_med = filt_diff(img_med,H,W,handles.diff);

[img_idl,ind_idl,~] = find_srf(img_med,H,W);
mrg = 60;
[img_flt,H,W] = flatten(img_crp,H,W,ind_idl,mrg);

img_gau = imgaussfilt(img_flt,handles.g2Val);
img_diff = filt_diff(img_gau,H,W,handles.diff);

[img_rl,ind_rl,avg_rl] = find_srf(img_diff,H,W); %img_rl
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
axes(handles.imgOutputAxes)
axis image
imshow(img_rl,[]);



% --- Executes during object creation, after setting all properties.
function g1Slider_CreateFcn(hObject, eventdata, handles)
% hObject    handle to g1Slider (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: slider controls usually have a light gray background.
if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor',[.9 .9 .9]);
end


% --- Executes on slider movement.
function g2Slider_Callback(hObject, eventdata, handles)
% hObject    handle to g2Slider (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'Value') returns position of slider
%        get(hObject,'Min') and get(hObject,'Max') to determine range of slider
handles.g2Val = get(handles.g2Slider,'Value');
set(handles.g2ValLabel, 'String', handles.g2Val);
guidata(hObject,handles);

% filePath = handles.filePath;
imgFilePath = handles.imgFolderInfo;
imgName = imgFilePath(handles.imgOrder).name;

img = imread([handles.filePath,'\',imgName]);


[H,W] = size(img);

[img_crp,H,W] = crop(img,H,W,handles.lcrop,handles.rcrop,handles.tcrop,handles.bcrop);

img_gau = imgaussfilt(img_crp,handles.g1Val);
img_diff_bef = filt_diff(img_gau,H,W,handles.diff);
[img_rl_bef,ind_rl_bef,avg_rl_bef] = find_srf(img_diff_bef,H,W); %img_rl

img_med = medfilt2(img_gau,[handles.medVal*2 handles.medVal*2],'symmetric');
img_med = filt_diff(img_med,H,W,handles.diff);

[img_idl,ind_idl,~] = find_srf(img_med,H,W);
mrg = 60;
[img_flt,H,W] = flatten(img_crp,H,W,ind_idl,mrg);

img_gau = imgaussfilt(img_flt,handles.g2Val);
img_diff = filt_diff(img_gau,H,W,handles.diff);

[img_rl,ind_rl,avg_rl] = find_srf(img_diff,H,W); %img_rl
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
axes(handles.imgOutputAxes)
axis image
imshow(img_rl,[]);

% --- Executes during object creation, after setting all properties.
function g2Slider_CreateFcn(hObject, eventdata, handles)
% hObject    handle to g2Slider (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: slider controls usually have a light gray background.
if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor',[.9 .9 .9]);
end


% --- Executes on slider movement.
function medSlider_Callback(hObject, eventdata, handles)
% hObject    handle to medSlider (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'Value') returns position of slider
%        get(hObject,'Min') and get(hObject,'Max') to determine range of slider
handles.medVal = get(handles.medSlider,'Value');
set(handles.medValLabel, 'String', handles.medVal);
guidata(hObject,handles);

% filePath = handles.filePath;
imgFilePath = handles.imgFolderInfo;
imgName = imgFilePath(handles.imgOrder).name;

img = imread([handles.filePath,'\',imgName]);


[H,W] = size(img);

[img_crp,H,W] = crop(img,H,W,handles.lcrop,handles.rcrop,handles.tcrop,handles.bcrop);

img_gau = imgaussfilt(img_crp,handles.g1Val);
img_diff_bef = filt_diff(img_gau,H,W,handles.diff);
[img_rl_bef,ind_rl_bef,avg_rl_bef] = find_srf(img_diff_bef,H,W); %img_rl

img_med = medfilt2(img_gau,[handles.medVal*2 handles.medVal*2],'symmetric');
img_med = filt_diff(img_med,H,W,handles.diff);

[img_idl,ind_idl,~] = find_srf(img_med,H,W);
mrg = 60;
[img_flt,H,W] = flatten(img_crp,H,W,ind_idl,mrg);

img_gau = imgaussfilt(img_flt,handles.g2Val);
img_diff = filt_diff(img_gau,H,W,handles.diff);

[img_rl,ind_rl,avg_rl] = find_srf(img_diff,H,W); %img_rl
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
axes(handles.imgOutputAxes)
axis image
imshow(img_rl,[]);

% --- Executes during object creation, after setting all properties.
function medSlider_CreateFcn(hObject, eventdata, handles)
% hObject    handle to medSlider (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: slider controls usually have a light gray background.
if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor',[.9 .9 .9]);
end