koennijbroek

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Nov 28th, 2024 (edited)
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  1. execution:
  2. default: local_env
  3. environments:
  4. local_env:
  5. runner: local
  6. tpv_dispatcher:
  7. container_monitor: false
  8. docker_default_container_id: 'quay.io/galaxyproject/galaxy-min:24.1.1'
  9. function: map_tool_to_destination
  10. rules_module: tpv.rules
  11. runner: dynamic
  12. tpv_config_files:
  13. - https://gxy.io/tpv/db.yml
  14. - lib/galaxy/jobs/rules/tpv_rules_local.yml
  15. type: python
  16. tools:
  17. - destination: tpv_dispatcher
  18. id: upload1
  19. - destination: tpv_dispatcher
  20. id: prep_primer3
  21. handling:
  22. assign:
  23. - db-skip-locked
  24. runners:
  25. k8s:
  26. k8s_cleanup_job: never
  27. k8s_data_volume_claim: 'my-galaxy-release-pvc-galaxy:/galaxy/server/database'
  28. k8s_fs_group_id: "101"
  29. k8s_galaxy_instance_id: 'my-galaxy-release'
  30. k8s_interactivetools_ingress_annotations: |
  31.  
  32. nginx.ingress.kubernetes.io/proxy-body-size: 10G
  33. nginx.ingress.kubernetes.io/proxy-read-timeout: "600"
  34. k8s_interactivetools_use_ssl: true
  35. k8s_job_ttl_secs_after_finished: 90
  36. k8s_namespace: 'kni-galaxy2'
  37. k8s_persistent_volume_claims: |-
  38. my-galaxy-release-pvc-galaxy/config:/galaxy/server/database/config:r,my-galaxy-release-pvc-galaxy/tmp:/galaxy/server/database/tmp:rw,my-galaxy-release-pvc-galaxy/tool-data:/galaxy/server/database/tool-data:rw,my-galaxy-release-pvc-galaxy/tools:/galaxy/server/database/tools:r,my-galaxy-release-pvc-galaxy/shed_tools:/galaxy/server/database/shed_tools:r,pvc-galaxy:/data/nfs1
  39. k8s_pod_priority_class: |-
  40. my-galaxy-release-job-priority
  41. k8s_pull_policy: IfNotPresent
  42. k8s_supplemental_group_id: "101"
  43. k8s_use_service_account: true
  44. k8s_working_volume_claim: 'my-galaxy-release-pvc-galaxy:/galaxy/server/database'
  45. load: galaxy.jobs.runners.kubernetes:KubernetesJobRunner
  46. local:
  47. load: galaxy.jobs.runners.local:LocalJobRunner
  48. workers: 4
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