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  1. [2017-08-16T15:10:53.758+0300] [glassfish 4.1] [INFO] [] [edu.harvard.iq.dataverse.search.IndexAllServiceBean] [tid: _ThreadID=127 _ThreadName=__ejb-thread-pool1] [timeMillis: 1502885453758] [levelValue: 800] [[
  2.   indexing dataset 183 of 444]]
  3.  
  4. [2017-08-16T15:10:53.761+0300] [glassfish 4.1] [WARNING] [AS-EJB-00056] [javax.enterprise.ejb.container] [tid: _ThreadID=127 _ThreadName=__ejb-thread-pool1] [timeMillis: 1502885453761] [levelValue: 900] [[
  5.   A system exception occurred during an invocation on EJB IndexServiceBean, method: public java.util.concurrent.Future edu.harvard.iq.dataverse.IndexServiceBean.indexDatasetInNewTransaction(edu.harvard.iq.dataverse.Dataset)]]
  6.  
  7. [2017-08-16T15:10:53.762+0300] [glassfish 4.1] [WARNING] [] [javax.enterprise.ejb.container] [tid: _ThreadID=127 _ThreadName=__ejb-thread-pool1] [timeMillis: 1502885453762] [levelValue: 900] [[
  8.  
  9. javax.ejb.EJBException
  10.     at com.sun.ejb.containers.EJBContainerTransactionManager.processSystemException(EJBContainerTransactionManager.java:748)
  11.     at com.sun.ejb.containers.EJBContainerTransactionManager.completeNewTx(EJBContainerTransactionManager.java:698)
  12.     at com.sun.ejb.containers.EJBContainerTransactionManager.postInvokeTx(EJBContainerTransactionManager.java:515)
  13.     at com.sun.ejb.containers.BaseContainer.postInvokeTx(BaseContainer.java:4566)
  14.     at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2074)
  15.     at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2044)
  16.     at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:220)
  17.     at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:88)
  18.     at com.sun.proxy.$Proxy285.indexDatasetInNewTransaction(Unknown Source)
  19.     at edu.harvard.iq.dataverse.__EJB31_Generated__IndexServiceBean__Intf____Bean__.indexDatasetInNewTransaction(Unknown Source)
  20.     at edu.harvard.iq.dataverse.search.IndexAllServiceBean.indexAllOrSubset(IndexAllServiceBean.java:118)
  21.     at edu.harvard.iq.dataverse.search.IndexAllServiceBean.indexAllOrSubset(IndexAllServiceBean.java:46)
  22.     at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
  23.     at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
  24.     at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
  25.     at java.lang.reflect.Method.invoke(Method.java:498)
  26.     at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081)
  27.     at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153)
  28.     at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4786)
  29.     at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:656)
  30.     at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
  31.     at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
  32.     at org.jboss.weld.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:55)
  33.     at org.jboss.weld.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52)
  34.     at sun.reflect.GeneratedMethodAccessor95.invoke(Unknown Source)
  35.     at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
  36.     at java.lang.reflect.Method.invoke(Method.java:498)
  37.     at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
  38.     at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
  39.     at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
  40.     at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)
  41.     at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)
  42.     at sun.reflect.GeneratedMethodAccessor96.invoke(Unknown Source)
  43.     at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
  44.     at java.lang.reflect.Method.invoke(Method.java:498)
  45.     at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
  46.     at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
  47.     at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:369)
  48.     at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4758)
  49.     at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4746)
  50.     at com.sun.ejb.containers.EjbAsyncTask.call(EjbAsyncTask.java:101)
  51.     at java.util.concurrent.FutureTask.run(FutureTask.java:266)
  52.     at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
  53.     at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
  54.     at java.lang.Thread.run(Thread.java:745)
  55. Caused by: java.lang.NullPointerException
  56.     at edu.harvard.iq.dataverse.IndexServiceBean.indexDataset(IndexServiceBean.java:252)
  57.     at edu.harvard.iq.dataverse.IndexServiceBean.indexDatasetInNewTransaction(IndexServiceBean.java:219)
  58.     at sun.reflect.GeneratedMethodAccessor376.invoke(Unknown Source)
  59.     at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
  60.     at java.lang.reflect.Method.invoke(Method.java:498)
  61.     at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081)
  62.     at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153)
  63.     at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4786)
  64.     at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:656)
  65.     at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
  66.     at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
  67.     at org.jboss.weld.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:46)
  68.     at org.jboss.weld.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52)
  69.     at sun.reflect.GeneratedMethodAccessor95.invoke(Unknown Source)
  70.     at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
  71.     at java.lang.reflect.Method.invoke(Method.java:498)
  72.     at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
  73.     at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
  74.     at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
  75.     at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)
  76.     at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)
  77.     at sun.reflect.GeneratedMethodAccessor96.invoke(Unknown Source)
  78.     at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
  79.     at java.lang.reflect.Method.invoke(Method.java:498)
  80.     at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
  81.     at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
  82.     at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:369)
  83.     at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4758)
  84.     at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4746)
  85.     at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212)
  86.     ... 38 more
  87. ]]
  88.  
  89. [2017-08-16T15:10:53.763+0300] [glassfish 4.1] [WARNING] [AS-EJB-00056] [javax.enterprise.ejb.container] [tid: _ThreadID=127 _ThreadName=__ejb-thread-pool1] [timeMillis: 1502885453763] [levelValue: 900] [[
  90.   A system exception occurred during an invocation on EJB IndexAllServiceBean, method: public java.util.concurrent.Future edu.harvard.iq.dataverse.search.IndexAllServiceBean.indexAllOrSubset(long,long,boolean,boolean)]]
  91.  
  92. [2017-08-16T15:10:53.763+0300] [glassfish 4.1] [WARNING] [] [javax.enterprise.ejb.container] [tid: _ThreadID=127 _ThreadName=__ejb-thread-pool1] [timeMillis: 1502885453763] [levelValue: 900] [[
  93.  
  94. javax.ejb.EJBException
  95.     at com.sun.ejb.containers.EJBContainerTransactionManager.processSystemException(EJBContainerTransactionManager.java:748)
  96.     at com.sun.ejb.containers.EJBContainerTransactionManager.completeNewTx(EJBContainerTransactionManager.java:698)
  97.     at com.sun.ejb.containers.EJBContainerTransactionManager.postInvokeTx(EJBContainerTransactionManager.java:515)
  98.     at com.sun.ejb.containers.BaseContainer.postInvokeTx(BaseContainer.java:4566)
  99.     at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2074)
  100.     at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2044)
  101.     at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:220)
  102.     at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:88)
  103.     at com.sun.proxy.$Proxy285.indexDatasetInNewTransaction(Unknown Source)
  104.     at edu.harvard.iq.dataverse.__EJB31_Generated__IndexServiceBean__Intf____Bean__.indexDatasetInNewTransaction(Unknown Source)
  105.     at edu.harvard.iq.dataverse.search.IndexAllServiceBean.indexAllOrSubset(IndexAllServiceBean.java:118)
  106.     at edu.harvard.iq.dataverse.search.IndexAllServiceBean.indexAllOrSubset(IndexAllServiceBean.java:46)
  107.     at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
  108.     at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
  109.     at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
  110.     at java.lang.reflect.Method.invoke(Method.java:498)
  111.     at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081)
  112.     at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153)
  113.     at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4786)
  114.     at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:656)
  115.     at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
  116.     at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
  117.     at org.jboss.weld.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:55)
  118.     at org.jboss.weld.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52)
  119.     at sun.reflect.GeneratedMethodAccessor95.invoke(Unknown Source)
  120.     at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
  121.     at java.lang.reflect.Method.invoke(Method.java:498)
  122.     at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
  123.     at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
  124.     at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
  125.     at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)
  126.     at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)
  127.     at sun.reflect.GeneratedMethodAccessor96.invoke(Unknown Source)
  128.     at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
  129.     at java.lang.reflect.Method.invoke(Method.java:498)
  130.     at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
  131.     at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
  132.     at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:369)
  133.     at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4758)
  134.     at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4746)
  135.     at com.sun.ejb.containers.EjbAsyncTask.call(EjbAsyncTask.java:101)
  136.     at java.util.concurrent.FutureTask.run(FutureTask.java:266)
  137.     at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
  138.     at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
  139.     at java.lang.Thread.run(Thread.java:745)
  140. Caused by: java.lang.NullPointerException
  141.     at edu.harvard.iq.dataverse.IndexServiceBean.indexDataset(IndexServiceBean.java:252)
  142.     at edu.harvard.iq.dataverse.IndexServiceBean.indexDatasetInNewTransaction(IndexServiceBean.java:219)
  143.     at sun.reflect.GeneratedMethodAccessor376.invoke(Unknown Source)
  144.     at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
  145.     at java.lang.reflect.Method.invoke(Method.java:498)
  146.     at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081)
  147.     at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153)
  148.     at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4786)
  149.     at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:656)
  150.     at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
  151.     at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
  152.     at org.jboss.weld.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:46)
  153.     at org.jboss.weld.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52)
  154.     at sun.reflect.GeneratedMethodAccessor95.invoke(Unknown Source)
  155.     at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
  156.     at java.lang.reflect.Method.invoke(Method.java:498)
  157.     at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
  158.     at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
  159.     at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
  160.     at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)
  161.     at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)
  162.     at sun.reflect.GeneratedMethodAccessor96.invoke(Unknown Source)
  163.     at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
  164.     at java.lang.reflect.Method.invoke(Method.java:498)
  165.     at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
  166.     at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
  167.     at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:369)
  168.     at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4758)
  169.     at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4746)
  170.     at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212)
  171.     ... 38 more
  172. ]]
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