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misnomer001

caucasus_eneolithic

misnomer001
Dec 30th, 2019
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  1. allsnps: YES
  2. ## qpAdm version: 810
  3. seed: 1981788561
  4.  
  5. left pops:
  6. Caucasus_Eneolithic
  7. Georgia_Kotias.SG
  8. Anatolia_N
  9. Parkhai_EN
  10.  
  11. right pops:
  12. Mbuti.DG
  13. Morocco_Iberomaurusian
  14. Ganj_Dareh_N
  15. PPN
  16. Natufian
  17. Iberia_MN
  18. Russia_MA1.SG
  19. Ust_Ishim.DG
  20. Kostenki14.SG
  21. Georgia_Satsurblia.SG
  22. EEHG
  23. Serbia_Iron_Gates_HG
  24. Czech_Vestonice16
  25. Onge.DG
  26.  
  27. 0 Caucasus_Eneolithic 3
  28. 1 Georgia_Kotias.SG 1
  29. 2 Anatolia_N 23
  30. 3 Parkhai_EN 4
  31. 4 Mbuti.DG 5
  32. 5 Morocco_Iberomaurusian 6
  33. 6 Ganj_Dareh_N 7
  34. 7 PPN 8
  35. 8 Natufian 6
  36. 9 Iberia_MN 4
  37. 10 Russia_MA1.SG 1
  38. 11 Ust_Ishim.DG 1
  39. 12 Kostenki14.SG 1
  40. 13 Georgia_Satsurblia.SG 1
  41. 14 EEHG 3
  42. 15 Serbia_Iron_Gates_HG 32
  43. 16 Czech_Vestonice16 1
  44. 17 Onge.DG 2
  45. jackknife block size: 0.050
  46. snps: 1150527 indivs: 109
  47. number of blocks for block jackknife: 552
  48. ## ncols: 1150527
  49. coverage: Caucasus_Eneolithic 784983
  50. coverage: Georgia_Kotias.SG 1149097
  51. coverage: Anatolia_N 1136560
  52. coverage: Parkhai_EN 995807
  53. coverage: Mbuti.DG 1150376
  54. coverage: Morocco_Iberomaurusian 1101342
  55. coverage: Ganj_Dareh_N 1029695
  56. coverage: PPN 835499
  57. coverage: Natufian 535079
  58. coverage: Iberia_MN 967760
  59. coverage: Russia_MA1.SG 805960
  60. coverage: Ust_Ishim.DG 1062044
  61. coverage: Kostenki14.SG 1048972
  62. coverage: Georgia_Satsurblia.SG 801311
  63. coverage: EEHG 1027057
  64. coverage: Serbia_Iron_Gates_HG 1139259
  65. coverage: Czech_Vestonice16 732091
  66. coverage: Onge.DG 1120748
  67. dof (jackknife): 463.377
  68. numsnps used: 1150527
  69. codimension 1
  70. f4info:
  71. f4rank: 2 dof: 11 chisq: 10.583 tail: 0.478842971 dofdiff: 13 chisqdiff: -10.583 taildiff: 1
  72. B:
  73. scale 1.000 1.000
  74. Morocco_Iberomaurusian 0.782 0.137
  75. Ganj_Dareh_N -1.091 -1.449
  76. PPN 1.784 0.200
  77. Natufian 1.301 0.172
  78. Iberia_MN 1.828 0.617
  79. Russia_MA1.SG -0.218 -0.037
  80. Ust_Ishim.DG 0.112 0.079
  81. Kostenki14.SG 0.434 0.280
  82. Georgia_Satsurblia.SG -1.127 3.039
  83. EEHG 0.064 0.565
  84. Serbia_Iron_Gates_HG 0.981 0.851
  85. Czech_Vestonice16 0.691 0.236
  86. Onge.DG -0.124 -0.114
  87. A:
  88. scale 563.114 1285.170
  89. Georgia_Kotias.SG -0.807 0.946
  90. Anatolia_N 1.385 -0.350
  91. Parkhai_EN -0.657 -1.408
  92.  
  93.  
  94. full rank
  95. f4info:
  96. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 10.583 taildiff: 0.478842971
  97. B:
  98. scale 1.000 1.000 1.000
  99. Morocco_Iberomaurusian 0.783 0.182 0.352
  100. Ganj_Dareh_N -1.085 -1.495 1.451
  101. PPN 1.779 0.302 0.286
  102. Natufian 1.305 0.243 0.107
  103. Iberia_MN 1.826 0.710 0.906
  104. Russia_MA1.SG -0.230 -0.032 0.106
  105. Ust_Ishim.DG 0.116 0.106 0.389
  106. Kostenki14.SG 0.434 0.318 0.299
  107. Georgia_Satsurblia.SG -1.152 2.969 -0.225
  108. EEHG 0.060 0.548 -2.162
  109. Serbia_Iron_Gates_HG 0.972 0.886 -2.050
  110. Czech_Vestonice16 0.682 0.222 0.711
  111. Onge.DG -0.120 -0.116 0.412
  112. A:
  113. scale 558.881 1286.396 4663.523
  114. Georgia_Kotias.SG -0.842 1.158 1.224
  115. Anatolia_N 1.379 -0.175 0.841
  116. Parkhai_EN -0.624 -1.277 0.891
  117.  
  118.  
  119. best coefficients: 0.439 0.354 0.207
  120. Jackknife mean: 0.437328407 0.354122319 0.208549275
  121. std. errors: 0.046 0.023 0.047
  122.  
  123. error covariance (* 1000000)
  124. 2141 -243 -1897
  125. -243 526 -283
  126. -1897 -283 2180
  127.  
  128.  
  129. summ: Caucasus_Eneolithic 3 0.478843 0.437 0.354 0.209 2141 -243 -1897 526 -283 2180
  130.  
  131. fixed pat wt dof chisq tail prob
  132. 000 0 11 10.583 0.478843 0.439 0.354 0.207
  133. 001 1 12 27.437 0.00668152 0.627 0.373 -0.000
  134. 010 1 12 203.492 0 0.994 0.000 0.006
  135. 100 1 12 112.689 1.75631e-18 0.000 0.401 0.599
  136. 011 2 13 203.309 0 1.000 0.000 -0.000
  137. 101 2 13 709.733 0 0.000 1.000 -0.000
  138. 110 2 13 355.745 0 0.000 0.000 1.000
  139. best pat: 000 0.478843 - -
  140. best pat: 001 0.00668152 chi(nested): 16.854 p-value for nested model: 4.03635e-05
  141. best pat: 011 2.85714e-36 chi(nested): 175.872 p-value for nested model: 3.86227e-40
  142.  
  143. coeffs: 0.439 0.354 0.207
  144.  
  145. ## dscore:: f_4(Base, Fit, Rbase, right2)
  146. ## genstat:: f_4(Base, Fit, right1, right2)
  147.  
  148. details: Georgia_Kotias.SG Morocco_Iberomaurusian -0.000930 -2.504895
  149. details: Anatolia_N Morocco_Iberomaurusian 0.001940 6.887480
  150. details: Parkhai_EN Morocco_Iberomaurusian -0.001038 -3.485422
  151. dscore: Morocco_Iberomaurusian f4: 0.000064 Z: 0.229182
  152.  
  153. details: Georgia_Kotias.SG Ganj_Dareh_N 0.000719 1.818070
  154. details: Anatolia_N Ganj_Dareh_N -0.002235 -7.420896
  155. details: Parkhai_EN Ganj_Dareh_N 0.002939 8.768386
  156. dscore: Ganj_Dareh_N f4: 0.000133 Z: 0.440736
  157.  
  158. details: Georgia_Kotias.SG PPN -0.002312 -5.801881
  159. details: Anatolia_N PPN 0.004411 14.350225
  160. details: Parkhai_EN PPN -0.002265 -7.134286
  161. dscore: PPN f4: 0.000078 Z: 0.258539
  162.  
  163. details: Georgia_Kotias.SG Natufian -0.001723 -5.440626
  164. details: Anatolia_N Natufian 0.003218 10.387776
  165. details: Parkhai_EN Natufian -0.001718 -5.750788
  166. dscore: Natufian f4: 0.000027 Z: 0.104102
  167.  
  168. details: Georgia_Kotias.SG Iberia_MN -0.001926 -4.962037
  169. details: Anatolia_N Iberia_MN 0.004486 14.381950
  170. details: Parkhai_EN Iberia_MN -0.002696 -8.027942
  171. dscore: Iberia_MN f4: 0.000185 Z: 0.615288
  172.  
  173. details: Georgia_Kotias.SG Russia_MA1.SG 0.000294 0.624399
  174. details: Anatolia_N Russia_MA1.SG -0.000663 -1.796270
  175. details: Parkhai_EN Russia_MA1.SG 0.000172 0.461177
  176. dscore: Russia_MA1.SG f4: -0.000070 Z: -0.199955
  177.  
  178. details: Georgia_Kotias.SG Ust_Ishim.DG 0.000080 0.180779
  179. details: Anatolia_N Ust_Ishim.DG 0.000329 0.964983
  180. details: Parkhai_EN Ust_Ishim.DG -0.000215 -0.557653
  181. dscore: Ust_Ishim.DG f4: 0.000107 Z: 0.316296
  182.  
  183. details: Georgia_Kotias.SG Kostenki14.SG -0.000317 -0.659669
  184. details: Anatolia_N Kostenki14.SG 0.001053 2.864875
  185. details: Parkhai_EN Kostenki14.SG -0.000813 -2.020505
  186. dscore: Kostenki14.SG f4: 0.000065 Z: 0.179568
  187.  
  188. details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.004374 8.825606
  189. details: Anatolia_N Georgia_Satsurblia.SG -0.003298 -8.966054
  190. details: Parkhai_EN Georgia_Satsurblia.SG -0.001754 -4.543803
  191. dscore: Georgia_Satsurblia.SG f4: 0.000389 Z: 1.059335
  192.  
  193. details: Georgia_Kotias.SG EEHG -0.000361 -0.743249
  194. details: Anatolia_N EEHG -0.000486 -1.381224
  195. details: Parkhai_EN EEHG -0.001248 -3.307397
  196. dscore: EEHG f4: -0.000589 Z: -1.627307
  197.  
  198. details: Georgia_Kotias.SG Serbia_Iron_Gates_HG -0.001213 -3.040655
  199. details: Anatolia_N Serbia_Iron_Gates_HG 0.001858 6.170305
  200. details: Parkhai_EN Serbia_Iron_Gates_HG -0.002436 -7.425448
  201. dscore: Serbia_Iron_Gates_HG f4: -0.000379 Z: -1.237218
  202.  
  203. details: Georgia_Kotias.SG Czech_Vestonice16 -0.000636 -1.375512
  204. details: Anatolia_N Czech_Vestonice16 0.001755 4.476055
  205. details: Parkhai_EN Czech_Vestonice16 -0.000862 -2.115267
  206. dscore: Czech_Vestonice16 f4: 0.000164 Z: 0.449367
  207.  
  208. details: Georgia_Kotias.SG Onge.DG 0.000145 0.358279
  209. details: Anatolia_N Onge.DG -0.000233 -0.751840
  210. details: Parkhai_EN Onge.DG 0.000253 0.798701
  211. dscore: Onge.DG f4: 0.000034 Z: 0.112531
  212.  
  213. gendstat: Mbuti.DG Morocco_Iberomaurusian 0.229
  214. gendstat: Mbuti.DG Ganj_Dareh_N 0.441
  215. gendstat: Mbuti.DG PPN 0.259
  216. gendstat: Mbuti.DG Natufian 0.104
  217. gendstat: Mbuti.DG Iberia_MN 0.615
  218. gendstat: Mbuti.DG Russia_MA1.SG -0.200
  219. gendstat: Mbuti.DG Ust_Ishim.DG 0.316
  220. gendstat: Mbuti.DG Kostenki14.SG 0.180
  221. gendstat: Mbuti.DG Georgia_Satsurblia.SG 1.059
  222. gendstat: Mbuti.DG EEHG -1.627
  223. gendstat: Mbuti.DG Serbia_Iron_Gates_HG -1.237
  224. gendstat: Mbuti.DG Czech_Vestonice16 0.449
  225. gendstat: Mbuti.DG Onge.DG 0.113
  226. gendstat: Morocco_Iberomaurusian Ganj_Dareh_N 0.204
  227. gendstat: Morocco_Iberomaurusian PPN 0.044
  228. gendstat: Morocco_Iberomaurusian Natufian -0.118
  229. gendstat: Morocco_Iberomaurusian Iberia_MN 0.380
  230. gendstat: Morocco_Iberomaurusian Russia_MA1.SG -0.356
  231. gendstat: Morocco_Iberomaurusian Ust_Ishim.DG 0.118
  232. gendstat: Morocco_Iberomaurusian Kostenki14.SG 0.004
  233. gendstat: Morocco_Iberomaurusian Georgia_Satsurblia.SG 0.812
  234. gendstat: Morocco_Iberomaurusian EEHG -1.816
  235. gendstat: Morocco_Iberomaurusian Serbia_Iron_Gates_HG -1.394
  236. gendstat: Morocco_Iberomaurusian Czech_Vestonice16 0.260
  237. gendstat: Morocco_Iberomaurusian Onge.DG -0.088
  238. gendstat: Ganj_Dareh_N PPN -0.166
  239. gendstat: Ganj_Dareh_N Natufian -0.314
  240. gendstat: Ganj_Dareh_N Iberia_MN 0.154
  241. gendstat: Ganj_Dareh_N Russia_MA1.SG -0.530
  242. gendstat: Ganj_Dareh_N Ust_Ishim.DG -0.066
  243. gendstat: Ganj_Dareh_N Kostenki14.SG -0.167
  244. gendstat: Ganj_Dareh_N Georgia_Satsurblia.SG 0.662
  245. gendstat: Ganj_Dareh_N EEHG -1.907
  246. gendstat: Ganj_Dareh_N Serbia_Iron_Gates_HG -1.603
  247. gendstat: Ganj_Dareh_N Czech_Vestonice16 0.081
  248. gendstat: Ganj_Dareh_N Onge.DG -0.288
  249. gendstat: PPN Natufian -0.177
  250. gendstat: PPN Iberia_MN 0.380
  251. gendstat: PPN Russia_MA1.SG -0.392
  252. gendstat: PPN Ust_Ishim.DG 0.080
  253. gendstat: PPN Kostenki14.SG -0.032
  254. gendstat: PPN Georgia_Satsurblia.SG 0.768
  255. gendstat: PPN EEHG -1.811
  256. gendstat: PPN Serbia_Iron_Gates_HG -1.554
  257. gendstat: PPN Czech_Vestonice16 0.237
  258. gendstat: PPN Onge.DG -0.131
  259. gendstat: Natufian Iberia_MN 0.528
  260. gendstat: Natufian Russia_MA1.SG -0.258
  261. gendstat: Natufian Ust_Ishim.DG 0.218
  262. gendstat: Natufian Kostenki14.SG 0.100
  263. gendstat: Natufian Georgia_Satsurblia.SG 0.895
  264. gendstat: Natufian EEHG -1.688
  265. gendstat: Natufian Serbia_Iron_Gates_HG -1.358
  266. gendstat: Natufian Czech_Vestonice16 0.375
  267. gendstat: Natufian Onge.DG 0.019
  268. gendstat: Iberia_MN Russia_MA1.SG -0.691
  269. gendstat: Iberia_MN Ust_Ishim.DG -0.212
  270. gendstat: Iberia_MN Kostenki14.SG -0.328
  271. gendstat: Iberia_MN Georgia_Satsurblia.SG 0.514
  272. gendstat: Iberia_MN EEHG -2.276
  273. gendstat: Iberia_MN Serbia_Iron_Gates_HG -2.220
  274. gendstat: Iberia_MN Czech_Vestonice16 -0.060
  275. gendstat: Iberia_MN Onge.DG -0.478
  276. gendstat: Russia_MA1.SG Ust_Ishim.DG 0.423
  277. gendstat: Russia_MA1.SG Kostenki14.SG 0.331
  278. gendstat: Russia_MA1.SG Georgia_Satsurblia.SG 1.041
  279. gendstat: Russia_MA1.SG EEHG -1.406
  280. gendstat: Russia_MA1.SG Serbia_Iron_Gates_HG -0.897
  281. gendstat: Russia_MA1.SG Czech_Vestonice16 0.581
  282. gendstat: Russia_MA1.SG Onge.DG 0.278
  283. gendstat: Ust_Ishim.DG Kostenki14.SG -0.102
  284. gendstat: Ust_Ishim.DG Georgia_Satsurblia.SG 0.657
  285. gendstat: Ust_Ishim.DG EEHG -1.694
  286. gendstat: Ust_Ishim.DG Serbia_Iron_Gates_HG -1.371
  287. gendstat: Ust_Ishim.DG Czech_Vestonice16 0.140
  288. gendstat: Ust_Ishim.DG Onge.DG -0.201
  289. gendstat: Kostenki14.SG Georgia_Satsurblia.SG 0.722
  290. gendstat: Kostenki14.SG EEHG -1.650
  291. gendstat: Kostenki14.SG Serbia_Iron_Gates_HG -1.302
  292. gendstat: Kostenki14.SG Czech_Vestonice16 0.259
  293. gendstat: Kostenki14.SG Onge.DG -0.083
  294. gendstat: Georgia_Satsurblia.SG EEHG -2.216
  295. gendstat: Georgia_Satsurblia.SG Serbia_Iron_Gates_HG -1.936
  296. gendstat: Georgia_Satsurblia.SG Czech_Vestonice16 -0.491
  297. gendstat: Georgia_Satsurblia.SG Onge.DG -0.879
  298. gendstat: EEHG Serbia_Iron_Gates_HG 0.758
  299. gendstat: EEHG Czech_Vestonice16 1.921
  300. gendstat: EEHG Onge.DG 1.761
  301. gendstat: Serbia_Iron_Gates_HG Czech_Vestonice16 1.629
  302. gendstat: Serbia_Iron_Gates_HG Onge.DG 1.318
  303. gendstat: Czech_Vestonice16 Onge.DG -0.339
  304.  
  305. ## end of run
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