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MusaeumScythia

Karasuk_LBA

MusaeumScythia
Dec 7th, 2024
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  1. qpAdm: parameter file: RISE495.qpAdm.par
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. genotypename: v54.1_1240K.geno
  5. snpname: v54.1_1240K.snp
  6. indivname: v54.1_1240K.ind
  7. popleft: RISE495_leftlist.txt
  8. popright: rightlist
  9. details: YES
  10. ## qpAdm -p RISE495.qpAdm.par
  11. ## qpAdm version: 2050
  12. seed: 239245854
  13. allsnps set NO. It is recommended that allsnps be set explicitly
  14. *** recommended that inbreed be explicitly set ***
  15. inbreed set NO
  16. read 1073741824 bytes
  17. read 2147483648 bytes
  18. read 3221225472 bytes
  19. read 3467232556 bytes
  20. packed geno read OK
  21. end of inpack
  22.  
  23. left pops:
  24. RISE495 1
  25. Russia_MLBA_Sintashta 36
  26. Russia_Tyumen_HG 1
  27. Mongolia_North_N 5
  28. Iran_C_TepeHissar 13
  29.  
  30. right pops:
  31. Cameroon_SMA.SG 2
  32. Turkey_N.SG 3
  33. Italy_Mesolithic.SG 3
  34. CHG 2
  35. Iran_TepeAbdulHosein_N.SG 3
  36. Russia_Arkhangelsk_Veretye_Mesolithic.SG 1
  37. Russia_DevilsCave_N.SG 4
  38. South_Africa_400BP.SG 4
  39. Nepal_Mebrak_2125BP.SG 2
  40. Russia_Sunghir_UP.SG 4
  41. Russia_Kostenki14.SG 1
  42. Kazakhstan_Botai_Eneolithic.SG 3
  43. Switzerland_Bichon.SG 1
  44. Spain_HG.SG 3
  45.  
  46. jackknife block size: 0.050
  47. snps: 1150466 indivs: 92
  48. number of blocks for block jackknife: 714
  49. ## ncols: 1150466
  50. coverage: RISE495 1104605
  51. coverage: Russia_MLBA_Sintashta 1128313
  52. coverage: Russia_Tyumen_HG 805560
  53. coverage: Mongolia_North_N 1057835
  54. coverage: Iran_C_TepeHissar 987000
  55. coverage: Cameroon_SMA.SG 1148928
  56. coverage: Turkey_N.SG 1150163
  57. coverage: Italy_Mesolithic.SG 1141404
  58. coverage: CHG 1147700
  59. coverage: Iran_TepeAbdulHosein_N.SG 1061042
  60. coverage: Russia_Arkhangelsk_Veretye_Mesolithic.SG 1088577
  61. coverage: Russia_DevilsCave_N.SG 1148318
  62. coverage: South_Africa_400BP.SG 1150181
  63. coverage: Nepal_Mebrak_2125BP.SG 594658
  64. coverage: Russia_Sunghir_UP.SG 1150000
  65. coverage: Russia_Kostenki14.SG 1048972
  66. coverage: Kazakhstan_Botai_Eneolithic.SG 1149621
  67. coverage: Switzerland_Bichon.SG 1140092
  68. coverage: Spain_HG.SG 1101680
  69. Effective number of blocks: 631.018
  70. numsnps used: 470044
  71. codimension 1
  72. f4info:
  73. f4rank: 3 dof: 10 chisq: 14.687 tail: 0.143890591 dofdiff: 12 chisqdiff: -14.687 taildiff: 1
  74. B:
  75. scale 1.000 1.000 1.000
  76. Turkey_N.SG 0.937 -0.316 1.090
  77. Italy_Mesolithic.SG 0.994 0.800 1.500
  78. CHG 0.870 -0.507 -0.106
  79. Iran_TepeAbdulHosein_N.SG 0.676 -0.889 -0.979
  80. Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.982 1.609 -0.713
  81. Russia_DevilsCave_N.SG -2.013 1.123 1.003
  82. South_Africa_400BP.SG 0.017 -0.055 0.042
  83. Nepal_Mebrak_2125BP.SG -1.685 1.118 0.491
  84. Russia_Sunghir_UP.SG 0.387 0.510 0.237
  85. Russia_Kostenki14.SG 0.385 0.476 -0.085
  86. Kazakhstan_Botai_Eneolithic.SG 0.467 2.093 -2.044
  87. Switzerland_Bichon.SG 0.949 0.802 1.276
  88. Spain_HG.SG 0.804 0.775 0.981
  89. A:
  90. scale 351.435 507.249 1060.228
  91. Russia_MLBA_Sintashta 1.016 -0.178 0.785
  92. Russia_Tyumen_HG 0.628 1.111 -1.634
  93. Mongolia_North_N -1.548 -0.131 -0.050
  94. Iran_C_TepeHissar 0.418 -1.648 -0.843
  95.  
  96.  
  97. full rank
  98. f4info:
  99. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 14.687 taildiff: 0.143890591
  100. B:
  101. scale 335.144 300.245 226.077 275.880
  102. Turkey_N.SG 1.254 -0.185 -0.908 0.356
  103. Italy_Mesolithic.SG 1.132 0.229 -1.134 -0.848
  104. CHG 0.878 0.156 -0.839 0.733
  105. Iran_TepeAbdulHosein_N.SG 0.516 0.205 -0.617 1.197
  106. Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.757 2.128 -0.947 -0.855
  107. Russia_DevilsCave_N.SG -1.867 -0.876 1.912 -1.949
  108. South_Africa_400BP.SG 0.055 -0.029 0.004 0.043
  109. Nepal_Mebrak_2125BP.SG -1.569 -0.347 1.673 -1.620
  110. Russia_Sunghir_UP.SG 0.413 0.474 -0.389 -0.381
  111. Russia_Kostenki14.SG 0.414 0.645 -0.339 -0.208
  112. Kazakhstan_Botai_Eneolithic.SG -0.340 2.529 -0.600 -1.341
  113. Switzerland_Bichon.SG 1.026 0.280 -1.096 -0.825
  114. Spain_HG.SG 1.035 0.562 -0.790 -0.603
  115. A:
  116. scale 2.000 2.000 2.000 2.000
  117. Russia_MLBA_Sintashta 2.000 0.000 0.000 0.000
  118. Russia_Tyumen_HG 0.000 2.000 0.000 0.000
  119. Mongolia_North_N 0.000 0.000 2.000 0.000
  120. Iran_C_TepeHissar 0.000 0.000 0.000 2.000
  121.  
  122.  
  123. best coefficients: 0.426 0.172 0.361 0.041
  124. Jackknife mean: 0.426017157 0.172183455 0.360523944 0.041275444
  125. std. errors: 0.040 0.024 0.016 0.032
  126.  
  127. error covariance (* 1,000,000)
  128. 1638 -623 96 -1110
  129. -623 575 -179 228
  130. 96 -179 255 -172
  131. -1110 228 -172 1055
  132.  
  133.  
  134. summ: RISE495 4 0.143891 0.426 0.172 0.361 0.041 1638 -623 96 -1110 575 ...
  135. -179 228 255 -172 1055
  136.  
  137. fixed pat wt dof chisq tail prob
  138. 0000 0 10 14.687 0.143891 0.426 0.172 0.361 0.041
  139. 0001 1 11 16.537 0.122321 0.469 0.164 0.367 0.000
  140. 0010 1 11 434.788 0 0.169 0.508 0.000 0.323
  141. 0100 1 11 66.405 5.85954e-10 0.609 0.000 0.416 -0.025 infeasible
  142. 1000 1 11 111.953 7.45568e-19 0.000 0.333 0.337 0.330
  143. 0011 2 12 510.934 0 0.531 0.469 0.000 0.000
  144. 0101 2 12 68.278 6.7148e-10 0.587 0.000 0.413 0.000
  145. 0110 2 12 861.206 0 0.848 0.000 0.000 0.152
  146. 1001 2 12 360.868 0 0.000 0.570 0.430 0.000
  147. 1010 2 12 442.559 0 0.000 0.576 0.000 0.424
  148. 1100 2 12 392.436 0 0.000 0.000 0.472 0.528
  149. 0111 3 13 878.247 0 1.000 0.000 0.000 0.000
  150. 1011 3 13 741.075 0 0.000 1.000 0.000 0.000
  151. 1101 3 13 1330.091 0 0.000 0.000 1.000 0.000
  152. 1110 3 13 1233.320 0 0.000 0.000 0.000 1.000
  153. best pat: 0000 0.143891 - -
  154. best pat: 0001 0.122321 chi(nested): 1.850 p-value for nested model: 0.173746
  155. best pat: 0101 6.7148e-10 chi(nested): 51.741 p-value for nested model: 6.33301e-13
  156. best pat: 1011 5.66873e-150 not nested
  157.  
  158. coeffs: 0.426 0.172 0.361 0.041
  159.  
  160. ## dscore:: f_4(Base, Fit, Rbase, right2)
  161. ## genstat:: f_4(Base, Fit, right1, right2)
  162.  
  163. details: Russia_MLBA_Sintashta Turkey_N.SG 0.003742 12.012193
  164. details: Russia_Tyumen_HG Turkey_N.SG -0.000618 -1.485403
  165. details: Mongolia_North_N Turkey_N.SG -0.004018 -11.788437
  166. details: Iran_C_TepeHissar Turkey_N.SG 0.001290 3.978899
  167. dscore: Turkey_N.SG f4: 0.000092 Z: 0.312075
  168.  
  169. details: Russia_MLBA_Sintashta Italy_Mesolithic.SG 0.003379 9.470825
  170. details: Russia_Tyumen_HG Italy_Mesolithic.SG 0.000763 1.577180
  171. details: Mongolia_North_N Italy_Mesolithic.SG -0.005018 -12.428848
  172. details: Iran_C_TepeHissar Italy_Mesolithic.SG -0.003073 -7.835649
  173. dscore: Italy_Mesolithic.SG f4: -0.000365 Z: -1.057273
  174.  
  175. details: Russia_MLBA_Sintashta CHG 0.002621 7.523059
  176. details: Russia_Tyumen_HG CHG 0.000520 1.112018
  177. details: Mongolia_North_N CHG -0.003711 -9.864703
  178. details: Iran_C_TepeHissar CHG 0.002658 7.310955
  179. dscore: CHG f4: -0.000022 Z: -0.068119
  180.  
  181. details: Russia_MLBA_Sintashta Iran_TepeAbdulHosein_N.SG 0.001538 4.795885
  182. details: Russia_Tyumen_HG Iran_TepeAbdulHosein_N.SG 0.000681 1.556376
  183. details: Mongolia_North_N Iran_TepeAbdulHosein_N.SG -0.002730 -7.612054
  184. details: Iran_C_TepeHissar Iran_TepeAbdulHosein_N.SG 0.004340 12.291201
  185. dscore: Iran_TepeAbdulHosein_N.SG f4: -0.000033 Z: -0.104781
  186.  
  187. details: Russia_MLBA_Sintashta Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.002259 5.641608
  188. details: Russia_Tyumen_HG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.007089 12.464155
  189. details: Mongolia_North_N Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.004188 -9.009697
  190. details: Iran_C_TepeHissar Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.003098 -7.068290
  191. dscore: Russia_Arkhangelsk_Veretye_Mesolithic.SG f4: 0.000545 Z: 1.379912
  192.  
  193. details: Russia_MLBA_Sintashta Russia_DevilsCave_N.SG -0.005572 -15.630254
  194. details: Russia_Tyumen_HG Russia_DevilsCave_N.SG -0.002916 -5.989342
  195. details: Mongolia_North_N Russia_DevilsCave_N.SG 0.008457 20.735772
  196. details: Iran_C_TepeHissar Russia_DevilsCave_N.SG -0.007064 -18.201525
  197. dscore: Russia_DevilsCave_N.SG f4: -0.000118 Z: -0.338982
  198.  
  199. details: Russia_MLBA_Sintashta South_Africa_400BP.SG 0.000163 0.741966
  200. details: Russia_Tyumen_HG South_Africa_400BP.SG -0.000098 -0.343803
  201. details: Mongolia_North_N South_Africa_400BP.SG 0.000020 0.081377
  202. details: Iran_C_TepeHissar South_Africa_400BP.SG 0.000155 0.646308
  203. dscore: South_Africa_400BP.SG f4: 0.000066 Z: 0.309088
  204.  
  205. details: Russia_MLBA_Sintashta Nepal_Mebrak_2125BP.SG -0.004683 -12.162137
  206. details: Russia_Tyumen_HG Nepal_Mebrak_2125BP.SG -0.001157 -2.184076
  207. details: Mongolia_North_N Nepal_Mebrak_2125BP.SG 0.007400 16.618708
  208. details: Iran_C_TepeHissar Nepal_Mebrak_2125BP.SG -0.005871 -14.083146
  209. dscore: Nepal_Mebrak_2125BP.SG f4: 0.000232 Z: 0.614488
  210.  
  211. details: Russia_MLBA_Sintashta Russia_Sunghir_UP.SG 0.001233 3.966758
  212. details: Russia_Tyumen_HG Russia_Sunghir_UP.SG 0.001580 3.604621
  213. details: Mongolia_North_N Russia_Sunghir_UP.SG -0.001723 -4.657090
  214. details: Iran_C_TepeHissar Russia_Sunghir_UP.SG -0.001380 -4.082867
  215. dscore: Russia_Sunghir_UP.SG f4: 0.000119 Z: 0.390745
  216.  
  217. details: Russia_MLBA_Sintashta Russia_Kostenki14.SG 0.001235 3.084537
  218. details: Russia_Tyumen_HG Russia_Kostenki14.SG 0.002149 3.949665
  219. details: Mongolia_North_N Russia_Kostenki14.SG -0.001501 -3.363289
  220. details: Iran_C_TepeHissar Russia_Kostenki14.SG -0.000754 -1.757995
  221. dscore: Russia_Kostenki14.SG f4: 0.000324 Z: 0.841533
  222.  
  223. details: Russia_MLBA_Sintashta Kazakhstan_Botai_Eneolithic.SG -0.001014 -3.001320
  224. details: Russia_Tyumen_HG Kazakhstan_Botai_Eneolithic.SG 0.008422 18.021076
  225. details: Mongolia_North_N Kazakhstan_Botai_Eneolithic.SG -0.002654 -7.050687
  226. details: Iran_C_TepeHissar Kazakhstan_Botai_Eneolithic.SG -0.004860 -13.285316
  227. dscore: Kazakhstan_Botai_Eneolithic.SG f4: -0.000140 Z: -0.429634
  228.  
  229. details: Russia_MLBA_Sintashta Switzerland_Bichon.SG 0.003062 7.708756
  230. details: Russia_Tyumen_HG Switzerland_Bichon.SG 0.000932 1.657803
  231. details: Mongolia_North_N Switzerland_Bichon.SG -0.004848 -11.152301
  232. details: Iran_C_TepeHissar Switzerland_Bichon.SG -0.002990 -6.950669
  233. dscore: Switzerland_Bichon.SG f4: -0.000407 Z: -1.068640
  234.  
  235. details: Russia_MLBA_Sintashta Spain_HG.SG 0.003088 9.564793
  236. details: Russia_Tyumen_HG Spain_HG.SG 0.001871 4.212281
  237. details: Mongolia_North_N Spain_HG.SG -0.003496 -9.567659
  238. details: Iran_C_TepeHissar Spain_HG.SG -0.002185 -6.269017
  239. dscore: Spain_HG.SG f4: 0.000287 Z: 0.926796
  240.  
  241. gendstat: Cameroon_SMA.SG Turkey_N.SG 0.312
  242. gendstat: Cameroon_SMA.SG Italy_Mesolithic.SG -1.057
  243. gendstat: Cameroon_SMA.SG CHG -0.068
  244. gendstat: Cameroon_SMA.SG Iran_TepeAbdulHosein_N.SG -0.105
  245. gendstat: Cameroon_SMA.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.380
  246. gendstat: Cameroon_SMA.SG Russia_DevilsCave_N.SG -0.339
  247. gendstat: Cameroon_SMA.SG South_Africa_400BP.SG 0.309
  248. gendstat: Cameroon_SMA.SG Nepal_Mebrak_2125BP.SG 0.614
  249. gendstat: Cameroon_SMA.SG Russia_Sunghir_UP.SG 0.391
  250. gendstat: Cameroon_SMA.SG Russia_Kostenki14.SG 0.842
  251. gendstat: Cameroon_SMA.SG Kazakhstan_Botai_Eneolithic.SG -0.430
  252. gendstat: Cameroon_SMA.SG Switzerland_Bichon.SG -1.069
  253. gendstat: Cameroon_SMA.SG Spain_HG.SG 0.927
  254. gendstat: Turkey_N.SG Italy_Mesolithic.SG -1.395
  255. gendstat: Turkey_N.SG CHG -0.369
  256. gendstat: Turkey_N.SG Iran_TepeAbdulHosein_N.SG -0.422
  257. gendstat: Turkey_N.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.180
  258. gendstat: Turkey_N.SG Russia_DevilsCave_N.SG -0.557
  259. gendstat: Turkey_N.SG South_Africa_400BP.SG -0.092
  260. gendstat: Turkey_N.SG Nepal_Mebrak_2125BP.SG 0.358
  261. gendstat: Turkey_N.SG Russia_Sunghir_UP.SG 0.095
  262. gendstat: Turkey_N.SG Russia_Kostenki14.SG 0.604
  263. gendstat: Turkey_N.SG Kazakhstan_Botai_Eneolithic.SG -0.725
  264. gendstat: Turkey_N.SG Switzerland_Bichon.SG -1.330
  265. gendstat: Turkey_N.SG Spain_HG.SG 0.657
  266. gendstat: Italy_Mesolithic.SG CHG 0.922
  267. gendstat: Italy_Mesolithic.SG Iran_TepeAbdulHosein_N.SG 0.935
  268. gendstat: Italy_Mesolithic.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 2.252
  269. gendstat: Italy_Mesolithic.SG Russia_DevilsCave_N.SG 0.601
  270. gendstat: Italy_Mesolithic.SG South_Africa_400BP.SG 1.251
  271. gendstat: Italy_Mesolithic.SG Nepal_Mebrak_2125BP.SG 1.411
  272. gendstat: Italy_Mesolithic.SG Russia_Sunghir_UP.SG 1.486
  273. gendstat: Italy_Mesolithic.SG Russia_Kostenki14.SG 1.735
  274. gendstat: Italy_Mesolithic.SG Kazakhstan_Botai_Eneolithic.SG 0.636
  275. gendstat: Italy_Mesolithic.SG Switzerland_Bichon.SG -0.126
  276. gendstat: Italy_Mesolithic.SG Spain_HG.SG 2.522
  277. gendstat: CHG Iran_TepeAbdulHosein_N.SG -0.033
  278. gendstat: CHG Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.374
  279. gendstat: CHG Russia_DevilsCave_N.SG -0.250
  280. gendstat: CHG South_Africa_400BP.SG 0.273
  281. gendstat: CHG Nepal_Mebrak_2125BP.SG 0.619
  282. gendstat: CHG Russia_Sunghir_UP.SG 0.438
  283. gendstat: CHG Russia_Kostenki14.SG 0.842
  284. gendstat: CHG Kazakhstan_Botai_Eneolithic.SG -0.338
  285. gendstat: CHG Switzerland_Bichon.SG -0.929
  286. gendstat: CHG Spain_HG.SG 0.934
  287. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.499
  288. gendstat: Iran_TepeAbdulHosein_N.SG Russia_DevilsCave_N.SG -0.227
  289. gendstat: Iran_TepeAbdulHosein_N.SG South_Africa_400BP.SG 0.326
  290. gendstat: Iran_TepeAbdulHosein_N.SG Nepal_Mebrak_2125BP.SG 0.667
  291. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Sunghir_UP.SG 0.492
  292. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Kostenki14.SG 0.908
  293. gendstat: Iran_TepeAbdulHosein_N.SG Kazakhstan_Botai_Eneolithic.SG -0.335
  294. gendstat: Iran_TepeAbdulHosein_N.SG Switzerland_Bichon.SG -0.937
  295. gendstat: Iran_TepeAbdulHosein_N.SG Spain_HG.SG 0.999
  296. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_DevilsCave_N.SG -1.486
  297. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG South_Africa_400BP.SG -1.227
  298. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Nepal_Mebrak_2125BP.SG -0.692
  299. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_Sunghir_UP.SG -1.114
  300. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_Kostenki14.SG -0.488
  301. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Kazakhstan_Botai_Eneolithic.SG -1.861
  302. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Switzerland_Bichon.SG -2.146
  303. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Spain_HG.SG -0.693
  304. gendstat: Russia_DevilsCave_N.SG South_Africa_400BP.SG 0.534
  305. gendstat: Russia_DevilsCave_N.SG Nepal_Mebrak_2125BP.SG 0.960
  306. gendstat: Russia_DevilsCave_N.SG Russia_Sunghir_UP.SG 0.650
  307. gendstat: Russia_DevilsCave_N.SG Russia_Kostenki14.SG 1.007
  308. gendstat: Russia_DevilsCave_N.SG Kazakhstan_Botai_Eneolithic.SG -0.059
  309. gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG -0.639
  310. gendstat: Russia_DevilsCave_N.SG Spain_HG.SG 1.087
  311. gendstat: South_Africa_400BP.SG Nepal_Mebrak_2125BP.SG 0.445
  312. gendstat: South_Africa_400BP.SG Russia_Sunghir_UP.SG 0.176
  313. gendstat: South_Africa_400BP.SG Russia_Kostenki14.SG 0.686
  314. gendstat: South_Africa_400BP.SG Kazakhstan_Botai_Eneolithic.SG -0.655
  315. gendstat: South_Africa_400BP.SG Switzerland_Bichon.SG -1.249
  316. gendstat: South_Africa_400BP.SG Spain_HG.SG 0.712
  317. gendstat: Nepal_Mebrak_2125BP.SG Russia_Sunghir_UP.SG -0.290
  318. gendstat: Nepal_Mebrak_2125BP.SG Russia_Kostenki14.SG 0.205
  319. gendstat: Nepal_Mebrak_2125BP.SG Kazakhstan_Botai_Eneolithic.SG -0.952
  320. gendstat: Nepal_Mebrak_2125BP.SG Switzerland_Bichon.SG -1.362
  321. gendstat: Nepal_Mebrak_2125BP.SG Spain_HG.SG 0.141
  322. gendstat: Russia_Sunghir_UP.SG Russia_Kostenki14.SG 0.592
  323. gendstat: Russia_Sunghir_UP.SG Kazakhstan_Botai_Eneolithic.SG -0.848
  324. gendstat: Russia_Sunghir_UP.SG Switzerland_Bichon.SG -1.409
  325. gendstat: Russia_Sunghir_UP.SG Spain_HG.SG 0.599
  326. gendstat: Russia_Kostenki14.SG Kazakhstan_Botai_Eneolithic.SG -1.189
  327. gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG -1.674
  328. gendstat: Russia_Kostenki14.SG Spain_HG.SG -0.102
  329. gendstat: Kazakhstan_Botai_Eneolithic.SG Switzerland_Bichon.SG -0.685
  330. gendstat: Kazakhstan_Botai_Eneolithic.SG Spain_HG.SG 1.371
  331. gendstat: Switzerland_Bichon.SG Spain_HG.SG 2.155
  332.  
  333. worst Z-score with right hand mix
  334. f4(Target, Fit, Base, mix of Right pops; Z: 3.721 sum: 1.000
  335. Turkey_N.SG 1.173
  336. Italy_Mesolithic.SG -6.724
  337. CHG -1.001
  338. Iran_TepeAbdulHosein_N.SG -1.396
  339. Russia_Arkhangelsk_Veretye_Mesolithic.SG 4.122
  340. Russia_DevilsCave_N.SG -2.195
  341. South_Africa_400BP.SG 1.407
  342. Nepal_Mebrak_2125BP.SG 1.852
  343. Russia_Sunghir_UP.SG 0.553
  344. Russia_Kostenki14.SG 2.043
  345. Kazakhstan_Botai_Eneolithic.SG -3.829
  346. Switzerland_Bichon.SG -3.549
  347. Spain_HG.SG 8.545
  348.  
  349. oldmode set: terminating
  350. ##end of qpAdm: 31.923 seconds cpu 1628.684 Mbytes in use
  351. qpAdm: parameter file: RISE496.qpAdm.par
  352. ### THE INPUT PARAMETERS
  353. ##PARAMETER NAME: VALUE
  354. genotypename: v54.1_1240K.geno
  355. snpname: v54.1_1240K.snp
  356. indivname: v54.1_1240K.ind
  357. popleft: RISE496_leftlist.txt
  358. popright: rightlist
  359. details: YES
  360. ## qpAdm -p RISE496.qpAdm.par
  361. ## qpAdm version: 2050
  362. seed: 241477048
  363. allsnps set NO. It is recommended that allsnps be set explicitly
  364. *** recommended that inbreed be explicitly set ***
  365. inbreed set NO
  366. read 1073741824 bytes
  367. read 2147483648 bytes
  368. read 3221225472 bytes
  369. read 3467232556 bytes
  370. packed geno read OK
  371. end of inpack
  372.  
  373. left pops:
  374. RISE496 1
  375. Russia_MLBA_Sintashta 36
  376. Russia_Tyumen_HG 1
  377. Mongolia_North_N 5
  378. Iran_C_TepeHissar 13
  379.  
  380. right pops:
  381. Cameroon_SMA.SG 2
  382. Turkey_N.SG 3
  383. Italy_Mesolithic.SG 3
  384. CHG 2
  385. Iran_TepeAbdulHosein_N.SG 3
  386. Russia_Arkhangelsk_Veretye_Mesolithic.SG 1
  387. Russia_DevilsCave_N.SG 4
  388. South_Africa_400BP.SG 4
  389. Nepal_Mebrak_2125BP.SG 2
  390. Russia_Sunghir_UP.SG 4
  391. Russia_Kostenki14.SG 1
  392. Kazakhstan_Botai_Eneolithic.SG 3
  393. Switzerland_Bichon.SG 1
  394. Spain_HG.SG 3
  395.  
  396. jackknife block size: 0.050
  397. snps: 1150466 indivs: 92
  398. number of blocks for block jackknife: 714
  399. ## ncols: 1150466
  400. coverage: RISE496 1013549
  401. coverage: Russia_MLBA_Sintashta 1128313
  402. coverage: Russia_Tyumen_HG 805560
  403. coverage: Mongolia_North_N 1057835
  404. coverage: Iran_C_TepeHissar 987000
  405. coverage: Cameroon_SMA.SG 1148928
  406. coverage: Turkey_N.SG 1150163
  407. coverage: Italy_Mesolithic.SG 1141404
  408. coverage: CHG 1147700
  409. coverage: Iran_TepeAbdulHosein_N.SG 1061042
  410. coverage: Russia_Arkhangelsk_Veretye_Mesolithic.SG 1088577
  411. coverage: Russia_DevilsCave_N.SG 1148318
  412. coverage: South_Africa_400BP.SG 1150181
  413. coverage: Nepal_Mebrak_2125BP.SG 594658
  414. coverage: Russia_Sunghir_UP.SG 1150000
  415. coverage: Russia_Kostenki14.SG 1048972
  416. coverage: Kazakhstan_Botai_Eneolithic.SG 1149621
  417. coverage: Switzerland_Bichon.SG 1140092
  418. coverage: Spain_HG.SG 1101680
  419. Effective number of blocks: 631.471
  420. numsnps used: 448872
  421. codimension 1
  422. f4info:
  423. f4rank: 3 dof: 10 chisq: 6.147 tail: 0.802733709 dofdiff: 12 chisqdiff: -6.147 taildiff: 1
  424. B:
  425. scale 1.000 1.000 1.000
  426. Turkey_N.SG 1.000 -0.446 0.910
  427. Italy_Mesolithic.SG 1.204 0.648 1.337
  428. CHG 0.803 -0.626 -0.239
  429. Iran_TepeAbdulHosein_N.SG 0.507 -0.963 -1.069
  430. Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.074 1.521 -0.843
  431. Russia_DevilsCave_N.SG -1.817 1.313 1.332
  432. South_Africa_400BP.SG -0.000 -0.057 0.054
  433. Nepal_Mebrak_2125BP.SG -1.535 1.269 0.758
  434. Russia_Sunghir_UP.SG 0.455 0.461 0.174
  435. Russia_Kostenki14.SG 0.411 0.395 -0.129
  436. Kazakhstan_Botai_Eneolithic.SG 0.486 2.049 -2.003
  437. Switzerland_Bichon.SG 1.142 0.657 1.135
  438. Spain_HG.SG 0.960 0.643 0.880
  439. A:
  440. scale 326.567 519.665 978.431
  441. Russia_MLBA_Sintashta 0.415 -0.178 0.442
  442. Russia_Tyumen_HG 0.055 1.234 -1.685
  443. Mongolia_North_N -1.933 0.239 0.320
  444. Iran_C_TepeHissar -0.299 -1.545 -0.929
  445.  
  446.  
  447. full rank
  448. f4info:
  449. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 6.147 taildiff: 0.802733709
  450. B:
  451. scale 782.103 347.583 163.184 291.489
  452. Turkey_N.SG 1.205 -0.943 -0.998 -0.234
  453. Italy_Mesolithic.SG 1.195 -0.322 -1.107 -1.391
  454. CHG 0.752 -0.357 -0.866 0.320
  455. Iran_TepeAbdulHosein_N.SG 0.118 -0.245 -0.679 0.872
  456. Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.095 1.750 -1.029 -1.486
  457. Russia_DevilsCave_N.SG -1.920 0.080 1.877 -1.131
  458. South_Africa_400BP.SG 0.146 -0.020 0.013 0.057
  459. Nepal_Mebrak_2125BP.SG -1.663 0.486 1.609 -0.944
  460. Russia_Sunghir_UP.SG 0.237 0.249 -0.428 -0.648
  461. Russia_Kostenki14.SG 0.324 0.510 -0.360 -0.416
  462. Kazakhstan_Botai_Eneolithic.SG -0.959 2.852 -0.461 -1.447
  463. Switzerland_Bichon.SG 1.015 -0.240 -1.060 -1.340
  464. Spain_HG.SG 0.973 0.013 -0.864 -1.133
  465. A:
  466. scale 2.000 2.000 2.000 2.000
  467. Russia_MLBA_Sintashta 2.000 0.000 0.000 0.000
  468. Russia_Tyumen_HG 0.000 2.000 0.000 0.000
  469. Mongolia_North_N 0.000 0.000 2.000 0.000
  470. Iran_C_TepeHissar 0.000 0.000 0.000 2.000
  471.  
  472.  
  473. best coefficients: 0.643 0.155 0.132 0.070
  474. Jackknife mean: 0.642948544 0.155097565 0.131759585 0.070194307
  475. std. errors: 0.045 0.024 0.016 0.035
  476.  
  477. error covariance (* 1,000,000)
  478. 1992 -684 25 -1333
  479. -684 570 -136 250
  480. 25 -136 256 -144
  481. -1333 250 -144 1227
  482.  
  483.  
  484. summ: RISE496 4 0.802734 0.643 0.155 0.132 0.070 1992 -684 25 -1333 570 ...
  485. -136 250 256 -144 1227
  486.  
  487. fixed pat wt dof chisq tail prob
  488. 0000 0 10 6.147 0.802734 0.643 0.155 0.132 0.070
  489. 0001 1 11 9.440 0.581366 0.721 0.142 0.137 0.000
  490. 0010 1 11 67.302 3.96622e-10 0.617 0.234 0.000 0.150
  491. 0100 1 11 47.034 2.12025e-06 0.834 0.000 0.166 -0.001
  492. 1000 1 11 189.467 0 0.000 0.404 0.105 0.491
  493. 0011 2 12 82.223 1.55194e-12 0.792 0.208 0.000 0.000
  494. 0101 2 12 50.290 1.2422e-06 0.835 0.000 0.165 0.000
  495. 0110 2 12 163.944 8.24471e-29 0.965 0.000 0.000 0.035
  496. 1001 2 12 627.485 0 0.000 0.742 0.258 0.000
  497. 1010 2 12 220.453 0 0.000 0.462 0.000 0.538
  498. 1100 2 12 547.552 0 0.000 0.000 0.254 0.746
  499. 0111 3 13 164.843 2.05754e-28 1.000 0.000 0.000 0.000
  500. 1011 3 13 733.778 0 0.000 1.000 0.000 0.000
  501. 1101 3 13 2056.209 0 0.000 0.000 1.000 0.000
  502. 1110 3 13 752.917 0 0.000 0.000 0.000 1.000
  503. best pat: 0000 0.802734 - -
  504. best pat: 0001 0.581366 chi(nested): 3.292 p-value for nested model: 0.0696
  505. best pat: 0101 1.2422e-06 chi(nested): 40.850 p-value for nested model: 1.64378e-10
  506. best pat: 0111 2.05754e-28 chi(nested): 114.554 p-value for nested model: 9.85696e-27
  507.  
  508. coeffs: 0.643 0.155 0.132 0.070
  509.  
  510. ## dscore:: f_4(Base, Fit, Rbase, right2)
  511. ## genstat:: f_4(Base, Fit, right1, right2)
  512.  
  513. details: Russia_MLBA_Sintashta Turkey_N.SG 0.001540 4.676605
  514. details: Russia_Tyumen_HG Turkey_N.SG -0.002712 -5.950744
  515. details: Mongolia_North_N Turkey_N.SG -0.006114 -16.019390
  516. details: Iran_C_TepeHissar Turkey_N.SG -0.000804 -2.406082
  517. dscore: Turkey_N.SG f4: -0.000292 Z: -0.900713
  518.  
  519. details: Russia_MLBA_Sintashta Italy_Mesolithic.SG 0.001528 3.921248
  520. details: Russia_Tyumen_HG Italy_Mesolithic.SG -0.000926 -1.831676
  521. details: Mongolia_North_N Italy_Mesolithic.SG -0.006783 -15.742984
  522. details: Iran_C_TepeHissar Italy_Mesolithic.SG -0.004774 -11.738284
  523. dscore: Italy_Mesolithic.SG f4: -0.000389 Z: -1.032940
  524.  
  525. details: Russia_MLBA_Sintashta CHG 0.000961 2.809380
  526. details: Russia_Tyumen_HG CHG -0.001026 -2.062506
  527. details: Mongolia_North_N CHG -0.005304 -13.165221
  528. details: Iran_C_TepeHissar CHG 0.001097 2.952933
  529. dscore: CHG f4: -0.000163 Z: -0.481254
  530.  
  531. details: Russia_MLBA_Sintashta Iran_TepeAbdulHosein_N.SG 0.000151 0.497803
  532. details: Russia_Tyumen_HG Iran_TepeAbdulHosein_N.SG -0.000705 -1.581574
  533. details: Mongolia_North_N Iran_TepeAbdulHosein_N.SG -0.004160 -11.498327
  534. details: Iran_C_TepeHissar Iran_TepeAbdulHosein_N.SG 0.002991 8.883677
  535. dscore: Iran_TepeAbdulHosein_N.SG f4: -0.000351 Z: -1.163148
  536.  
  537. details: Russia_MLBA_Sintashta Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.000121 0.279862
  538. details: Russia_Tyumen_HG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.005036 8.687736
  539. details: Mongolia_North_N Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.006306 -13.016381
  540. details: Iran_C_TepeHissar Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.005099 -11.033638
  541. dscore: Russia_Arkhangelsk_Veretye_Mesolithic.SG f4: -0.000329 Z: -0.784408
  542.  
  543. details: Russia_MLBA_Sintashta Russia_DevilsCave_N.SG -0.002455 -6.819956
  544. details: Russia_Tyumen_HG Russia_DevilsCave_N.SG 0.000230 0.452217
  545. details: Mongolia_North_N Russia_DevilsCave_N.SG 0.011503 26.922474
  546. details: Iran_C_TepeHissar Russia_DevilsCave_N.SG -0.003880 -10.103914
  547. dscore: Russia_DevilsCave_N.SG f4: -0.000299 Z: -0.838636
  548.  
  549. details: Russia_MLBA_Sintashta South_Africa_400BP.SG 0.000186 0.887130
  550. details: Russia_Tyumen_HG South_Africa_400BP.SG -0.000056 -0.194844
  551. details: Mongolia_North_N South_Africa_400BP.SG 0.000082 0.332589
  552. details: Iran_C_TepeHissar South_Africa_400BP.SG 0.000196 0.837731
  553. dscore: South_Africa_400BP.SG f4: 0.000136 Z: 0.652739
  554.  
  555. details: Russia_MLBA_Sintashta Nepal_Mebrak_2125BP.SG -0.002126 -5.550512
  556. details: Russia_Tyumen_HG Nepal_Mebrak_2125BP.SG 0.001397 2.502007
  557. details: Mongolia_North_N Nepal_Mebrak_2125BP.SG 0.009863 21.315665
  558. details: Iran_C_TepeHissar Nepal_Mebrak_2125BP.SG -0.003238 -7.835207
  559. dscore: Nepal_Mebrak_2125BP.SG f4: -0.000078 Z: -0.204302
  560.  
  561. details: Russia_MLBA_Sintashta Russia_Sunghir_UP.SG 0.000304 0.951088
  562. details: Russia_Tyumen_HG Russia_Sunghir_UP.SG 0.000716 1.515733
  563. details: Mongolia_North_N Russia_Sunghir_UP.SG -0.002623 -6.708358
  564. details: Iran_C_TepeHissar Russia_Sunghir_UP.SG -0.002222 -6.502782
  565. dscore: Russia_Sunghir_UP.SG f4: -0.000195 Z: -0.612905
  566.  
  567. details: Russia_MLBA_Sintashta Russia_Kostenki14.SG 0.000414 1.064827
  568. details: Russia_Tyumen_HG Russia_Kostenki14.SG 0.001467 2.602363
  569. details: Mongolia_North_N Russia_Kostenki14.SG -0.002205 -4.771130
  570. details: Iran_C_TepeHissar Russia_Kostenki14.SG -0.001426 -3.350243
  571. dscore: Russia_Kostenki14.SG f4: 0.000103 Z: 0.268778
  572.  
  573. details: Russia_MLBA_Sintashta Kazakhstan_Botai_Eneolithic.SG -0.001227 -3.575009
  574. details: Russia_Tyumen_HG Kazakhstan_Botai_Eneolithic.SG 0.008206 17.326472
  575. details: Mongolia_North_N Kazakhstan_Botai_Eneolithic.SG -0.002825 -7.002245
  576. details: Iran_C_TepeHissar Kazakhstan_Botai_Eneolithic.SG -0.004963 -13.060977
  577. dscore: Kazakhstan_Botai_Eneolithic.SG f4: -0.000237 Z: -0.701144
  578.  
  579. details: Russia_MLBA_Sintashta Switzerland_Bichon.SG 0.001298 2.882916
  580. details: Russia_Tyumen_HG Switzerland_Bichon.SG -0.000690 -1.181606
  581. details: Mongolia_North_N Switzerland_Bichon.SG -0.006497 -13.514063
  582. details: Iran_C_TepeHissar Switzerland_Bichon.SG -0.004598 -9.878471
  583. dscore: Switzerland_Bichon.SG f4: -0.000450 Z: -1.038617
  584.  
  585. details: Russia_MLBA_Sintashta Spain_HG.SG 0.001245 3.429641
  586. details: Russia_Tyumen_HG Spain_HG.SG 0.000036 0.073894
  587. details: Mongolia_North_N Spain_HG.SG -0.005298 -12.600960
  588. details: Iran_C_TepeHissar Spain_HG.SG -0.003887 -9.904457
  589. dscore: Spain_HG.SG f4: -0.000164 Z: -0.459237
  590.  
  591. gendstat: Cameroon_SMA.SG Turkey_N.SG -0.901
  592. gendstat: Cameroon_SMA.SG Italy_Mesolithic.SG -1.033
  593. gendstat: Cameroon_SMA.SG CHG -0.481
  594. gendstat: Cameroon_SMA.SG Iran_TepeAbdulHosein_N.SG -1.163
  595. gendstat: Cameroon_SMA.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.784
  596. gendstat: Cameroon_SMA.SG Russia_DevilsCave_N.SG -0.839
  597. gendstat: Cameroon_SMA.SG South_Africa_400BP.SG 0.653
  598. gendstat: Cameroon_SMA.SG Nepal_Mebrak_2125BP.SG -0.204
  599. gendstat: Cameroon_SMA.SG Russia_Sunghir_UP.SG -0.613
  600. gendstat: Cameroon_SMA.SG Russia_Kostenki14.SG 0.269
  601. gendstat: Cameroon_SMA.SG Kazakhstan_Botai_Eneolithic.SG -0.701
  602. gendstat: Cameroon_SMA.SG Switzerland_Bichon.SG -1.039
  603. gendstat: Cameroon_SMA.SG Spain_HG.SG -0.459
  604. gendstat: Turkey_N.SG Italy_Mesolithic.SG -0.297
  605. gendstat: Turkey_N.SG CHG 0.387
  606. gendstat: Turkey_N.SG Iran_TepeAbdulHosein_N.SG -0.191
  607. gendstat: Turkey_N.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.094
  608. gendstat: Turkey_N.SG Russia_DevilsCave_N.SG -0.020
  609. gendstat: Turkey_N.SG South_Africa_400BP.SG 1.369
  610. gendstat: Turkey_N.SG Nepal_Mebrak_2125BP.SG 0.507
  611. gendstat: Turkey_N.SG Russia_Sunghir_UP.SG 0.324
  612. gendstat: Turkey_N.SG Russia_Kostenki14.SG 1.021
  613. gendstat: Turkey_N.SG Kazakhstan_Botai_Eneolithic.SG 0.162
  614. gendstat: Turkey_N.SG Switzerland_Bichon.SG -0.395
  615. gendstat: Turkey_N.SG Spain_HG.SG 0.395
  616. gendstat: Italy_Mesolithic.SG CHG 0.585
  617. gendstat: Italy_Mesolithic.SG Iran_TepeAbdulHosein_N.SG 0.107
  618. gendstat: Italy_Mesolithic.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.153
  619. gendstat: Italy_Mesolithic.SG Russia_DevilsCave_N.SG 0.219
  620. gendstat: Italy_Mesolithic.SG South_Africa_400BP.SG 1.426
  621. gendstat: Italy_Mesolithic.SG Nepal_Mebrak_2125BP.SG 0.703
  622. gendstat: Italy_Mesolithic.SG Russia_Sunghir_UP.SG 0.599
  623. gendstat: Italy_Mesolithic.SG Russia_Kostenki14.SG 1.180
  624. gendstat: Italy_Mesolithic.SG Kazakhstan_Botai_Eneolithic.SG 0.440
  625. gendstat: Italy_Mesolithic.SG Switzerland_Bichon.SG -0.188
  626. gendstat: Italy_Mesolithic.SG Spain_HG.SG 0.819
  627. gendstat: CHG Iran_TepeAbdulHosein_N.SG -0.586
  628. gendstat: CHG Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.389
  629. gendstat: CHG Russia_DevilsCave_N.SG -0.333
  630. gendstat: CHG South_Africa_400BP.SG 0.858
  631. gendstat: CHG Nepal_Mebrak_2125BP.SG 0.196
  632. gendstat: CHG Russia_Sunghir_UP.SG -0.093
  633. gendstat: CHG Russia_Kostenki14.SG 0.646
  634. gendstat: CHG Kazakhstan_Botai_Eneolithic.SG -0.204
  635. gendstat: CHG Switzerland_Bichon.SG -0.666
  636. gendstat: CHG Spain_HG.SG -0.003
  637. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.053
  638. gendstat: Iran_TepeAbdulHosein_N.SG Russia_DevilsCave_N.SG 0.141
  639. gendstat: Iran_TepeAbdulHosein_N.SG South_Africa_400BP.SG 1.597
  640. gendstat: Iran_TepeAbdulHosein_N.SG Nepal_Mebrak_2125BP.SG 0.700
  641. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Sunghir_UP.SG 0.494
  642. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Kostenki14.SG 1.198
  643. gendstat: Iran_TepeAbdulHosein_N.SG Kazakhstan_Botai_Eneolithic.SG 0.364
  644. gendstat: Iran_TepeAbdulHosein_N.SG Switzerland_Bichon.SG -0.240
  645. gendstat: Iran_TepeAbdulHosein_N.SG Spain_HG.SG 0.550
  646. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_DevilsCave_N.SG 0.064
  647. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG South_Africa_400BP.SG 1.118
  648. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Nepal_Mebrak_2125BP.SG 0.520
  649. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_Sunghir_UP.SG 0.345
  650. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_Kostenki14.SG 0.943
  651. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Kazakhstan_Botai_Eneolithic.SG 0.246
  652. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Switzerland_Bichon.SG -0.267
  653. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Spain_HG.SG 0.421
  654. gendstat: Russia_DevilsCave_N.SG South_Africa_400BP.SG 1.227
  655. gendstat: Russia_DevilsCave_N.SG Nepal_Mebrak_2125BP.SG 0.670
  656. gendstat: Russia_DevilsCave_N.SG Russia_Sunghir_UP.SG 0.293
  657. gendstat: Russia_DevilsCave_N.SG Russia_Kostenki14.SG 0.969
  658. gendstat: Russia_DevilsCave_N.SG Kazakhstan_Botai_Eneolithic.SG 0.180
  659. gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG -0.326
  660. gendstat: Russia_DevilsCave_N.SG Spain_HG.SG 0.351
  661. gendstat: South_Africa_400BP.SG Nepal_Mebrak_2125BP.SG -0.570
  662. gendstat: South_Africa_400BP.SG Russia_Sunghir_UP.SG -1.040
  663. gendstat: South_Africa_400BP.SG Russia_Kostenki14.SG -0.085
  664. gendstat: South_Africa_400BP.SG Kazakhstan_Botai_Eneolithic.SG -1.172
  665. gendstat: South_Africa_400BP.SG Switzerland_Bichon.SG -1.362
  666. gendstat: South_Africa_400BP.SG Spain_HG.SG -0.862
  667. gendstat: Nepal_Mebrak_2125BP.SG Russia_Sunghir_UP.SG -0.288
  668. gendstat: Nepal_Mebrak_2125BP.SG Russia_Kostenki14.SG 0.399
  669. gendstat: Nepal_Mebrak_2125BP.SG Kazakhstan_Botai_Eneolithic.SG -0.418
  670. gendstat: Nepal_Mebrak_2125BP.SG Switzerland_Bichon.SG -0.753
  671. gendstat: Nepal_Mebrak_2125BP.SG Spain_HG.SG -0.203
  672. gendstat: Russia_Sunghir_UP.SG Russia_Kostenki14.SG 0.882
  673. gendstat: Russia_Sunghir_UP.SG Kazakhstan_Botai_Eneolithic.SG -0.136
  674. gendstat: Russia_Sunghir_UP.SG Switzerland_Bichon.SG -0.630
  675. gendstat: Russia_Sunghir_UP.SG Spain_HG.SG 0.099
  676. gendstat: Russia_Kostenki14.SG Kazakhstan_Botai_Eneolithic.SG -0.879
  677. gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG -1.190
  678. gendstat: Russia_Kostenki14.SG Spain_HG.SG -0.684
  679. gendstat: Kazakhstan_Botai_Eneolithic.SG Switzerland_Bichon.SG -0.510
  680. gendstat: Kazakhstan_Botai_Eneolithic.SG Spain_HG.SG 0.219
  681. gendstat: Switzerland_Bichon.SG Spain_HG.SG 0.813
  682.  
  683. worst Z-score with right hand mix
  684. f4(Target, Fit, Base, mix of Right pops; Z: 2.305 sum: 1.000
  685. Turkey_N.SG -23.008
  686. Italy_Mesolithic.SG -23.352
  687. CHG 11.878
  688. Iran_TepeAbdulHosein_N.SG -46.320
  689. Russia_Arkhangelsk_Veretye_Mesolithic.SG -9.838
  690. Russia_DevilsCave_N.SG -31.371
  691. South_Africa_400BP.SG 72.930
  692. Nepal_Mebrak_2125BP.SG 16.211
  693. Russia_Sunghir_UP.SG -4.022
  694. Russia_Kostenki14.SG 33.943
  695. Kazakhstan_Botai_Eneolithic.SG -9.143
  696. Switzerland_Bichon.SG -18.784
  697. Spain_HG.SG 31.876
  698.  
  699. oldmode set: terminating
  700. ##end of qpAdm: 35.151 seconds cpu 1628.684 Mbytes in use
  701. qpAdm: parameter file: RISE499.qpAdm.par
  702. ### THE INPUT PARAMETERS
  703. ##PARAMETER NAME: VALUE
  704. genotypename: v54.1_1240K.geno
  705. snpname: v54.1_1240K.snp
  706. indivname: v54.1_1240K.ind
  707. popleft: RISE499_leftlist.txt
  708. popright: rightlist
  709. details: YES
  710. ## qpAdm -p RISE499.qpAdm.par
  711. ## qpAdm version: 2050
  712. seed: 29274795
  713. allsnps set NO. It is recommended that allsnps be set explicitly
  714. *** recommended that inbreed be explicitly set ***
  715. inbreed set NO
  716. read 1073741824 bytes
  717. read 2147483648 bytes
  718. read 3221225472 bytes
  719. read 3467232556 bytes
  720. packed geno read OK
  721. end of inpack
  722.  
  723. left pops:
  724. RISE499 1
  725. Russia_MLBA_Sintashta 36
  726. Russia_Tyumen_HG 1
  727. Mongolia_North_N 5
  728. Iran_C_TepeHissar 13
  729.  
  730. right pops:
  731. Cameroon_SMA.SG 2
  732. Turkey_N.SG 3
  733. Italy_Mesolithic.SG 3
  734. CHG 2
  735. Iran_TepeAbdulHosein_N.SG 3
  736. Russia_Arkhangelsk_Veretye_Mesolithic.SG 1
  737. Russia_DevilsCave_N.SG 4
  738. South_Africa_400BP.SG 4
  739. Nepal_Mebrak_2125BP.SG 2
  740. Russia_Sunghir_UP.SG 4
  741. Russia_Kostenki14.SG 1
  742. Kazakhstan_Botai_Eneolithic.SG 3
  743. Switzerland_Bichon.SG 1
  744. Spain_HG.SG 3
  745.  
  746. jackknife block size: 0.050
  747. snps: 1150466 indivs: 92
  748. number of blocks for block jackknife: 714
  749. ## ncols: 1150466
  750. coverage: RISE499 853598
  751. coverage: Russia_MLBA_Sintashta 1128313
  752. coverage: Russia_Tyumen_HG 805560
  753. coverage: Mongolia_North_N 1057835
  754. coverage: Iran_C_TepeHissar 987000
  755. coverage: Cameroon_SMA.SG 1148928
  756. coverage: Turkey_N.SG 1150163
  757. coverage: Italy_Mesolithic.SG 1141404
  758. coverage: CHG 1147700
  759. coverage: Iran_TepeAbdulHosein_N.SG 1061042
  760. coverage: Russia_Arkhangelsk_Veretye_Mesolithic.SG 1088577
  761. coverage: Russia_DevilsCave_N.SG 1148318
  762. coverage: South_Africa_400BP.SG 1150181
  763. coverage: Nepal_Mebrak_2125BP.SG 594658
  764. coverage: Russia_Sunghir_UP.SG 1150000
  765. coverage: Russia_Kostenki14.SG 1048972
  766. coverage: Kazakhstan_Botai_Eneolithic.SG 1149621
  767. coverage: Switzerland_Bichon.SG 1140092
  768. coverage: Spain_HG.SG 1101680
  769. Effective number of blocks: 630.870
  770. numsnps used: 401488
  771. codimension 1
  772. f4info:
  773. f4rank: 3 dof: 10 chisq: 6.401 tail: 0.780482453 dofdiff: 12 chisqdiff: -6.401 taildiff: 1
  774. B:
  775. scale 1.000 1.000 1.000
  776. Turkey_N.SG 1.022 -0.424 0.901
  777. Italy_Mesolithic.SG 1.215 0.680 1.362
  778. CHG 0.816 -0.622 -0.238
  779. Iran_TepeAbdulHosein_N.SG 0.506 -0.982 -1.104
  780. Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.008 1.517 -0.805
  781. Russia_DevilsCave_N.SG -1.821 1.282 1.385
  782. South_Africa_400BP.SG 0.000 -0.062 0.041
  783. Nepal_Mebrak_2125BP.SG -1.560 1.235 0.794
  784. Russia_Sunghir_UP.SG 0.439 0.454 0.207
  785. Russia_Kostenki14.SG 0.414 0.416 -0.131
  786. Kazakhstan_Botai_Eneolithic.SG 0.408 2.050 -1.904
  787. Switzerland_Bichon.SG 1.146 0.684 1.190
  788. Spain_HG.SG 0.976 0.693 0.871
  789. A:
  790. scale 329.310 534.572 919.537
  791. Russia_MLBA_Sintashta 0.363 -0.166 0.251
  792. Russia_Tyumen_HG -0.012 1.247 -1.701
  793. Mongolia_North_N -1.939 0.185 0.254
  794. Iran_C_TepeHissar -0.328 -1.543 -0.990
  795.  
  796.  
  797. full rank
  798. f4info:
  799. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 6.401 taildiff: 0.780482453
  800. B:
  801. scale 896.171 342.121 165.352 299.457
  802. Turkey_N.SG 1.348 -0.911 -0.985 -0.250
  803. Italy_Mesolithic.SG 1.224 -0.379 -1.112 -1.455
  804. CHG 1.246 -0.206 -0.782 0.449
  805. Iran_TepeAbdulHosein_N.SG 0.365 -0.141 -0.630 0.974
  806. Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.224 1.719 -0.966 -1.429
  807. Russia_DevilsCave_N.SG -1.837 0.184 1.913 -1.046
  808. South_Africa_400BP.SG 0.072 -0.045 0.005 0.041
  809. Nepal_Mebrak_2125BP.SG -1.516 0.575 1.668 -0.828
  810. Russia_Sunghir_UP.SG 0.524 0.296 -0.368 -0.565
  811. Russia_Kostenki14.SG 0.203 0.407 -0.396 -0.485
  812. Kazakhstan_Botai_Eneolithic.SG -0.603 2.876 -0.364 -1.299
  813. Switzerland_Bichon.SG 0.957 -0.338 -1.079 -1.434
  814. Spain_HG.SG 0.823 -0.060 -0.907 -1.245
  815. A:
  816. scale 2.000 2.000 2.000 2.000
  817. Russia_MLBA_Sintashta 2.000 0.000 0.000 0.000
  818. Russia_Tyumen_HG 0.000 2.000 0.000 0.000
  819. Mongolia_North_N 0.000 0.000 2.000 0.000
  820. Iran_C_TepeHissar 0.000 0.000 0.000 2.000
  821.  
  822.  
  823. best coefficients: 0.730 0.111 0.131 0.027
  824. Jackknife mean: 0.729928018 0.111467167 0.131207582 0.027397233
  825. std. errors: 0.043 0.024 0.016 0.033
  826.  
  827. error covariance (* 1,000,000)
  828. 1827 -675 38 -1189
  829. -675 578 -130 227
  830. 38 -130 249 -157
  831. -1189 227 -157 1119
  832.  
  833.  
  834. summ: RISE499 4 0.780482 0.730 0.111 0.131 0.027 1827 -675 38 -1189 578 ...
  835. -130 227 249 -157 1119
  836.  
  837. fixed pat wt dof chisq tail prob
  838. 0000 0 10 6.401 0.780482 0.730 0.111 0.131 0.027
  839. 0001 1 11 8.844 0.636305 0.760 0.107 0.133 0.000
  840. 0010 1 11 70.549 9.60416e-11 0.715 0.179 0.000 0.105
  841. 0100 1 11 26.197 0.00606583 0.866 0.000 0.155 -0.021 infeasible
  842. 1000 1 11 247.764 0 0.000 0.406 0.105 0.489
  843. 0011 2 12 79.789 4.52875e-12 0.834 0.166 0.000 0.000
  844. 0101 2 12 28.904 0.00407152 0.846 0.000 0.154 0.000
  845. 0110 2 12 125.374 5.21892e-21 0.945 0.000 0.000 0.055
  846. 1001 2 12 684.687 0 0.000 0.811 0.189 0.000
  847. 1010 2 12 281.312 0 0.000 0.469 0.000 0.531
  848. 1100 2 12 607.132 0 0.000 0.000 0.248 0.752
  849. 0111 3 13 127.798 5.73477e-21 1.000 0.000 0.000 0.000
  850. 1011 3 13 731.299 0 0.000 1.000 0.000 0.000
  851. 1101 3 13 2028.505 0 0.000 0.000 1.000 0.000
  852. 1110 3 13 784.442 0 0.000 0.000 0.000 1.000
  853. best pat: 0000 0.780482 - -
  854. best pat: 0001 0.636305 chi(nested): 2.442 p-value for nested model: 0.118097
  855. best pat: 0101 0.00407152 chi(nested): 20.060 p-value for nested model: 7.50482e-06
  856. best pat: 0111 5.73477e-21 chi(nested): 98.894 p-value for nested model: 2.66429e-23
  857.  
  858. coeffs: 0.730 0.111 0.131 0.027
  859.  
  860. ## dscore:: f_4(Base, Fit, Rbase, right2)
  861. ## genstat:: f_4(Base, Fit, right1, right2)
  862.  
  863. details: Russia_MLBA_Sintashta Turkey_N.SG 0.001504 4.628879
  864. details: Russia_Tyumen_HG Turkey_N.SG -0.002663 -6.086487
  865. details: Mongolia_North_N Turkey_N.SG -0.005957 -15.769854
  866. details: Iran_C_TepeHissar Turkey_N.SG -0.000836 -2.452581
  867. dscore: Turkey_N.SG f4: -0.000003 Z: -0.009496
  868.  
  869. details: Russia_MLBA_Sintashta Italy_Mesolithic.SG 0.001366 3.718277
  870. details: Russia_Tyumen_HG Italy_Mesolithic.SG -0.001108 -2.197611
  871. details: Mongolia_North_N Italy_Mesolithic.SG -0.006723 -14.634282
  872. details: Iran_C_TepeHissar Italy_Mesolithic.SG -0.004858 -11.874402
  873. dscore: Italy_Mesolithic.SG f4: -0.000140 Z: -0.383805
  874.  
  875. details: Russia_MLBA_Sintashta CHG 0.001390 3.751787
  876. details: Russia_Tyumen_HG CHG -0.000602 -1.198445
  877. details: Mongolia_North_N CHG -0.004728 -10.447456
  878. details: Iran_C_TepeHissar CHG 0.001500 3.809298
  879. dscore: CHG f4: 0.000369 Z: 1.003309
  880.  
  881. details: Russia_MLBA_Sintashta Iran_TepeAbdulHosein_N.SG 0.000408 1.252618
  882. details: Russia_Tyumen_HG Iran_TepeAbdulHosein_N.SG -0.000413 -0.913484
  883. details: Mongolia_North_N Iran_TepeAbdulHosein_N.SG -0.003812 -9.938053
  884. details: Iran_C_TepeHissar Iran_TepeAbdulHosein_N.SG 0.003252 9.298323
  885. dscore: Iran_TepeAbdulHosein_N.SG f4: -0.000160 Z: -0.499238
  886.  
  887. details: Russia_MLBA_Sintashta Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.000250 0.597219
  888. details: Russia_Tyumen_HG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.005025 8.452442
  889. details: Mongolia_North_N Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.005840 -11.548142
  890. details: Iran_C_TepeHissar Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.004772 -10.669334
  891. dscore: Russia_Arkhangelsk_Veretye_Mesolithic.SG f4: -0.000154 Z: -0.371979
  892.  
  893. details: Russia_MLBA_Sintashta Russia_DevilsCave_N.SG -0.002049 -5.735363
  894. details: Russia_Tyumen_HG Russia_DevilsCave_N.SG 0.000538 1.081485
  895. details: Mongolia_North_N Russia_DevilsCave_N.SG 0.011572 26.467085
  896. details: Iran_C_TepeHissar Russia_DevilsCave_N.SG -0.003493 -8.984043
  897. dscore: Russia_DevilsCave_N.SG f4: -0.000013 Z: -0.038131
  898.  
  899. details: Russia_MLBA_Sintashta South_Africa_400BP.SG 0.000081 0.364837
  900. details: Russia_Tyumen_HG South_Africa_400BP.SG -0.000132 -0.457795
  901. details: Mongolia_North_N South_Africa_400BP.SG 0.000030 0.116210
  902. details: Iran_C_TepeHissar South_Africa_400BP.SG 0.000136 0.584407
  903. dscore: South_Africa_400BP.SG f4: 0.000052 Z: 0.239742
  904.  
  905. details: Russia_MLBA_Sintashta Nepal_Mebrak_2125BP.SG -0.001692 -4.256793
  906. details: Russia_Tyumen_HG Nepal_Mebrak_2125BP.SG 0.001680 3.090267
  907. details: Mongolia_North_N Nepal_Mebrak_2125BP.SG 0.010085 20.076248
  908. details: Iran_C_TepeHissar Nepal_Mebrak_2125BP.SG -0.002765 -6.759550
  909. dscore: Nepal_Mebrak_2125BP.SG f4: 0.000200 Z: 0.506444
  910.  
  911. details: Russia_MLBA_Sintashta Russia_Sunghir_UP.SG 0.000585 1.904798
  912. details: Russia_Tyumen_HG Russia_Sunghir_UP.SG 0.000866 1.913558
  913. details: Mongolia_North_N Russia_Sunghir_UP.SG -0.002228 -5.774877
  914. details: Iran_C_TepeHissar Russia_Sunghir_UP.SG -0.001887 -5.525422
  915. dscore: Russia_Sunghir_UP.SG f4: 0.000180 Z: 0.591440
  916.  
  917. details: Russia_MLBA_Sintashta Russia_Kostenki14.SG 0.000227 0.556805
  918. details: Russia_Tyumen_HG Russia_Kostenki14.SG 0.001189 2.132606
  919. details: Mongolia_North_N Russia_Kostenki14.SG -0.002392 -4.716971
  920. details: Iran_C_TepeHissar Russia_Kostenki14.SG -0.001619 -3.732799
  921. dscore: Russia_Kostenki14.SG f4: -0.000060 Z: -0.147555
  922.  
  923. details: Russia_MLBA_Sintashta Kazakhstan_Botai_Eneolithic.SG -0.000673 -1.971912
  924. details: Russia_Tyumen_HG Kazakhstan_Botai_Eneolithic.SG 0.008406 18.030440
  925. details: Mongolia_North_N Kazakhstan_Botai_Eneolithic.SG -0.002204 -5.353216
  926. details: Iran_C_TepeHissar Kazakhstan_Botai_Eneolithic.SG -0.004338 -12.087577
  927. dscore: Kazakhstan_Botai_Eneolithic.SG f4: 0.000038 Z: 0.112686
  928.  
  929. details: Russia_MLBA_Sintashta Switzerland_Bichon.SG 0.001067 2.518575
  930. details: Russia_Tyumen_HG Switzerland_Bichon.SG -0.000988 -1.691205
  931. details: Mongolia_North_N Switzerland_Bichon.SG -0.006523 -12.510155
  932. details: Iran_C_TepeHissar Switzerland_Bichon.SG -0.004787 -10.390628
  933. dscore: Switzerland_Bichon.SG f4: -0.000317 Z: -0.753094
  934.  
  935. details: Russia_MLBA_Sintashta Spain_HG.SG 0.000919 2.674423
  936. details: Russia_Tyumen_HG Spain_HG.SG -0.000174 -0.370692
  937. details: Mongolia_North_N Spain_HG.SG -0.005484 -12.832626
  938. details: Iran_C_TepeHissar Spain_HG.SG -0.004158 -11.179723
  939. dscore: Spain_HG.SG f4: -0.000181 Z: -0.532358
  940.  
  941. gendstat: Cameroon_SMA.SG Turkey_N.SG -0.009
  942. gendstat: Cameroon_SMA.SG Italy_Mesolithic.SG -0.384
  943. gendstat: Cameroon_SMA.SG CHG 1.003
  944. gendstat: Cameroon_SMA.SG Iran_TepeAbdulHosein_N.SG -0.499
  945. gendstat: Cameroon_SMA.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.372
  946. gendstat: Cameroon_SMA.SG Russia_DevilsCave_N.SG -0.038
  947. gendstat: Cameroon_SMA.SG South_Africa_400BP.SG 0.240
  948. gendstat: Cameroon_SMA.SG Nepal_Mebrak_2125BP.SG 0.506
  949. gendstat: Cameroon_SMA.SG Russia_Sunghir_UP.SG 0.591
  950. gendstat: Cameroon_SMA.SG Russia_Kostenki14.SG -0.148
  951. gendstat: Cameroon_SMA.SG Kazakhstan_Botai_Eneolithic.SG 0.113
  952. gendstat: Cameroon_SMA.SG Switzerland_Bichon.SG -0.753
  953. gendstat: Cameroon_SMA.SG Spain_HG.SG -0.532
  954. gendstat: Turkey_N.SG Italy_Mesolithic.SG -0.426
  955. gendstat: Turkey_N.SG CHG 1.111
  956. gendstat: Turkey_N.SG Iran_TepeAbdulHosein_N.SG -0.531
  957. gendstat: Turkey_N.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.396
  958. gendstat: Turkey_N.SG Russia_DevilsCave_N.SG -0.029
  959. gendstat: Turkey_N.SG South_Africa_400BP.SG 0.190
  960. gendstat: Turkey_N.SG Nepal_Mebrak_2125BP.SG 0.513
  961. gendstat: Turkey_N.SG Russia_Sunghir_UP.SG 0.663
  962. gendstat: Turkey_N.SG Russia_Kostenki14.SG -0.155
  963. gendstat: Turkey_N.SG Kazakhstan_Botai_Eneolithic.SG 0.128
  964. gendstat: Turkey_N.SG Switzerland_Bichon.SG -0.849
  965. gendstat: Turkey_N.SG Spain_HG.SG -0.626
  966. gendstat: Italy_Mesolithic.SG CHG 1.326
  967. gendstat: Italy_Mesolithic.SG Iran_TepeAbdulHosein_N.SG -0.057
  968. gendstat: Italy_Mesolithic.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.033
  969. gendstat: Italy_Mesolithic.SG Russia_DevilsCave_N.SG 0.316
  970. gendstat: Italy_Mesolithic.SG South_Africa_400BP.SG 0.556
  971. gendstat: Italy_Mesolithic.SG Nepal_Mebrak_2125BP.SG 0.763
  972. gendstat: Italy_Mesolithic.SG Russia_Sunghir_UP.SG 1.021
  973. gendstat: Italy_Mesolithic.SG Russia_Kostenki14.SG 0.204
  974. gendstat: Italy_Mesolithic.SG Kazakhstan_Botai_Eneolithic.SG 0.487
  975. gendstat: Italy_Mesolithic.SG Switzerland_Bichon.SG -0.562
  976. gendstat: Italy_Mesolithic.SG Spain_HG.SG -0.160
  977. gendstat: CHG Iran_TepeAbdulHosein_N.SG -1.585
  978. gendstat: CHG Russia_Arkhangelsk_Veretye_Mesolithic.SG -1.240
  979. gendstat: CHG Russia_DevilsCave_N.SG -0.954
  980. gendstat: CHG South_Africa_400BP.SG -0.915
  981. gendstat: CHG Nepal_Mebrak_2125BP.SG -0.389
  982. gendstat: CHG Russia_Sunghir_UP.SG -0.549
  983. gendstat: CHG Russia_Kostenki14.SG -1.032
  984. gendstat: CHG Kazakhstan_Botai_Eneolithic.SG -0.904
  985. gendstat: CHG Switzerland_Bichon.SG -1.607
  986. gendstat: CHG Spain_HG.SG -1.485
  987. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.015
  988. gendstat: Iran_TepeAbdulHosein_N.SG Russia_DevilsCave_N.SG 0.404
  989. gendstat: Iran_TepeAbdulHosein_N.SG South_Africa_400BP.SG 0.725
  990. gendstat: Iran_TepeAbdulHosein_N.SG Nepal_Mebrak_2125BP.SG 0.876
  991. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Sunghir_UP.SG 1.151
  992. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Kostenki14.SG 0.259
  993. gendstat: Iran_TepeAbdulHosein_N.SG Kazakhstan_Botai_Eneolithic.SG 0.620
  994. gendstat: Iran_TepeAbdulHosein_N.SG Switzerland_Bichon.SG -0.397
  995. gendstat: Iran_TepeAbdulHosein_N.SG Spain_HG.SG -0.065
  996. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_DevilsCave_N.SG 0.314
  997. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG South_Africa_400BP.SG 0.533
  998. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Nepal_Mebrak_2125BP.SG 0.763
  999. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_Sunghir_UP.SG 0.893
  1000. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_Kostenki14.SG 0.214
  1001. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Kazakhstan_Botai_Eneolithic.SG 0.537
  1002. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Switzerland_Bichon.SG -0.381
  1003. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Spain_HG.SG -0.072
  1004. gendstat: Russia_DevilsCave_N.SG South_Africa_400BP.SG 0.200
  1005. gendstat: Russia_DevilsCave_N.SG Nepal_Mebrak_2125BP.SG 0.626
  1006. gendstat: Russia_DevilsCave_N.SG Russia_Sunghir_UP.SG 0.559
  1007. gendstat: Russia_DevilsCave_N.SG Russia_Kostenki14.SG -0.111
  1008. gendstat: Russia_DevilsCave_N.SG Kazakhstan_Botai_Eneolithic.SG 0.155
  1009. gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG -0.703
  1010. gendstat: Russia_DevilsCave_N.SG Spain_HG.SG -0.449
  1011. gendstat: South_Africa_400BP.SG Nepal_Mebrak_2125BP.SG 0.400
  1012. gendstat: South_Africa_400BP.SG Russia_Sunghir_UP.SG 0.442
  1013. gendstat: South_Africa_400BP.SG Russia_Kostenki14.SG -0.297
  1014. gendstat: South_Africa_400BP.SG Kazakhstan_Botai_Eneolithic.SG -0.045
  1015. gendstat: South_Africa_400BP.SG Switzerland_Bichon.SG -0.940
  1016. gendstat: South_Africa_400BP.SG Spain_HG.SG -0.743
  1017. gendstat: Nepal_Mebrak_2125BP.SG Russia_Sunghir_UP.SG -0.052
  1018. gendstat: Nepal_Mebrak_2125BP.SG Russia_Kostenki14.SG -0.559
  1019. gendstat: Nepal_Mebrak_2125BP.SG Kazakhstan_Botai_Eneolithic.SG -0.429
  1020. gendstat: Nepal_Mebrak_2125BP.SG Switzerland_Bichon.SG -1.081
  1021. gendstat: Nepal_Mebrak_2125BP.SG Spain_HG.SG -0.925
  1022. gendstat: Russia_Sunghir_UP.SG Russia_Kostenki14.SG -0.705
  1023. gendstat: Russia_Sunghir_UP.SG Kazakhstan_Botai_Eneolithic.SG -0.461
  1024. gendstat: Russia_Sunghir_UP.SG Switzerland_Bichon.SG -1.349
  1025. gendstat: Russia_Sunghir_UP.SG Spain_HG.SG -1.252
  1026. gendstat: Russia_Kostenki14.SG Kazakhstan_Botai_Eneolithic.SG 0.246
  1027. gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG -0.597
  1028. gendstat: Russia_Kostenki14.SG Spain_HG.SG -0.331
  1029. gendstat: Kazakhstan_Botai_Eneolithic.SG Switzerland_Bichon.SG -0.894
  1030. gendstat: Kazakhstan_Botai_Eneolithic.SG Spain_HG.SG -0.643
  1031. gendstat: Switzerland_Bichon.SG Spain_HG.SG 0.414
  1032.  
  1033. worst Z-score with right hand mix
  1034. f4(Target, Fit, Base, mix of Right pops; Z: 2.378 sum: 1.000
  1035. Turkey_N.SG -0.099
  1036. Italy_Mesolithic.SG 0.164
  1037. CHG 2.634
  1038. Iran_TepeAbdulHosein_N.SG -2.378
  1039. Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.850
  1040. Russia_DevilsCave_N.SG -0.771
  1041. South_Africa_400BP.SG 1.203
  1042. Nepal_Mebrak_2125BP.SG 0.794
  1043. Russia_Sunghir_UP.SG 2.841
  1044. Russia_Kostenki14.SG -0.477
  1045. Kazakhstan_Botai_Eneolithic.SG 0.619
  1046. Switzerland_Bichon.SG -1.328
  1047. Spain_HG.SG -1.352
  1048.  
  1049. oldmode set: terminating
  1050. ##end of qpAdm: 35.021 seconds cpu 1628.684 Mbytes in use
  1051. qpAdm: parameter file: RISE502.qpAdm.par
  1052. ### THE INPUT PARAMETERS
  1053. ##PARAMETER NAME: VALUE
  1054. genotypename: v54.1_1240K.geno
  1055. snpname: v54.1_1240K.snp
  1056. indivname: v54.1_1240K.ind
  1057. popleft: RISE502_leftlist.txt
  1058. popright: rightlist
  1059. details: YES
  1060. ## qpAdm -p RISE502.qpAdm.par
  1061. ## qpAdm version: 2050
  1062. seed: 27410277
  1063. allsnps set NO. It is recommended that allsnps be set explicitly
  1064. *** recommended that inbreed be explicitly set ***
  1065. inbreed set NO
  1066. read 1073741824 bytes
  1067. read 2147483648 bytes
  1068. read 3221225472 bytes
  1069. read 3467232556 bytes
  1070. packed geno read OK
  1071. end of inpack
  1072.  
  1073. left pops:
  1074. RISE502 1
  1075. Russia_MLBA_Sintashta 36
  1076. Russia_Tyumen_HG 1
  1077. Mongolia_North_N 5
  1078. Iran_C_TepeHissar 13
  1079.  
  1080. right pops:
  1081. Cameroon_SMA.SG 2
  1082. Turkey_N.SG 3
  1083. Italy_Mesolithic.SG 3
  1084. CHG 2
  1085. Iran_TepeAbdulHosein_N.SG 3
  1086. Russia_Arkhangelsk_Veretye_Mesolithic.SG 1
  1087. Russia_DevilsCave_N.SG 4
  1088. South_Africa_400BP.SG 4
  1089. Nepal_Mebrak_2125BP.SG 2
  1090. Russia_Sunghir_UP.SG 4
  1091. Russia_Kostenki14.SG 1
  1092. Kazakhstan_Botai_Eneolithic.SG 3
  1093. Switzerland_Bichon.SG 1
  1094. Spain_HG.SG 3
  1095.  
  1096. jackknife block size: 0.050
  1097. snps: 1150466 indivs: 92
  1098. number of blocks for block jackknife: 714
  1099. ## ncols: 1150466
  1100. coverage: RISE502 830063
  1101. coverage: Russia_MLBA_Sintashta 1128313
  1102. coverage: Russia_Tyumen_HG 805560
  1103. coverage: Mongolia_North_N 1057835
  1104. coverage: Iran_C_TepeHissar 987000
  1105. coverage: Cameroon_SMA.SG 1148928
  1106. coverage: Turkey_N.SG 1150163
  1107. coverage: Italy_Mesolithic.SG 1141404
  1108. coverage: CHG 1147700
  1109. coverage: Iran_TepeAbdulHosein_N.SG 1061042
  1110. coverage: Russia_Arkhangelsk_Veretye_Mesolithic.SG 1088577
  1111. coverage: Russia_DevilsCave_N.SG 1148318
  1112. coverage: South_Africa_400BP.SG 1150181
  1113. coverage: Nepal_Mebrak_2125BP.SG 594658
  1114. coverage: Russia_Sunghir_UP.SG 1150000
  1115. coverage: Russia_Kostenki14.SG 1048972
  1116. coverage: Kazakhstan_Botai_Eneolithic.SG 1149621
  1117. coverage: Switzerland_Bichon.SG 1140092
  1118. coverage: Spain_HG.SG 1101680
  1119. Effective number of blocks: 631.114
  1120. numsnps used: 397972
  1121. codimension 1
  1122. f4info:
  1123. f4rank: 3 dof: 10 chisq: 18.536 tail: 0.0465722066 dofdiff: 12 chisqdiff: -18.536 taildiff: 1
  1124. B:
  1125. scale 1.000 1.000 1.000
  1126. Turkey_N.SG 0.961 -0.419 0.988
  1127. Italy_Mesolithic.SG 1.166 0.700 1.385
  1128. CHG 0.810 -0.611 -0.162
  1129. Iran_TepeAbdulHosein_N.SG 0.527 -0.985 -0.956
  1130. Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.114 1.486 -0.857
  1131. Russia_DevilsCave_N.SG -1.852 1.343 1.165
  1132. South_Africa_400BP.SG 0.016 -0.048 0.023
  1133. Nepal_Mebrak_2125BP.SG -1.550 1.290 0.567
  1134. Russia_Sunghir_UP.SG 0.429 0.459 0.176
  1135. Russia_Kostenki14.SG 0.425 0.400 -0.139
  1136. Kazakhstan_Botai_Eneolithic.SG 0.555 1.988 -2.119
  1137. Switzerland_Bichon.SG 1.083 0.698 1.223
  1138. Spain_HG.SG 0.930 0.711 0.847
  1139. A:
  1140. scale 362.782 533.683 1021.833
  1141. Russia_MLBA_Sintashta 0.707 -0.253 0.582
  1142. Russia_Tyumen_HG 0.356 1.090 -1.731
  1143. Mongolia_North_N -1.837 0.153 0.161
  1144. Iran_C_TepeHissar -0.027 -1.651 -0.799
  1145.  
  1146.  
  1147. full rank
  1148. f4info:
  1149. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 18.536 taildiff: 0.0465722066
  1150. B:
  1151. scale 493.613 361.083 191.310 292.167
  1152. Turkey_N.SG 0.947 -0.841 -1.063 -0.093
  1153. Italy_Mesolithic.SG 1.180 -0.083 -1.112 -1.102
  1154. CHG 0.836 -0.101 -0.832 0.521
  1155. Iran_TepeAbdulHosein_N.SG 0.245 -0.139 -0.674 0.938
  1156. Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.366 1.970 -1.078 -1.258
  1157. Russia_DevilsCave_N.SG -2.101 -0.621 1.774 -1.647
  1158. South_Africa_400BP.SG -0.205 -0.246 -0.117 -0.117
  1159. Nepal_Mebrak_2125BP.SG -1.621 0.089 1.611 -1.274
  1160. Russia_Sunghir_UP.SG 0.251 0.310 -0.429 -0.550
  1161. Russia_Kostenki14.SG -0.014 0.288 -0.505 -0.539
  1162. Kazakhstan_Botai_Eneolithic.SG -0.761 2.769 -0.590 -1.494
  1163. Switzerland_Bichon.SG 1.100 0.046 -1.022 -1.029
  1164. Spain_HG.SG 0.940 0.269 -0.859 -0.900
  1165. A:
  1166. scale 2.000 2.000 2.000 2.000
  1167. Russia_MLBA_Sintashta 2.000 0.000 0.000 0.000
  1168. Russia_Tyumen_HG 0.000 2.000 0.000 0.000
  1169. Mongolia_North_N 0.000 0.000 2.000 0.000
  1170. Iran_C_TepeHissar 0.000 0.000 0.000 2.000
  1171.  
  1172.  
  1173. best coefficients: 0.532 0.175 0.238 0.056
  1174. Jackknife mean: 0.531303051 0.174869153 0.237615506 0.056212291
  1175. std. errors: 0.046 0.025 0.018 0.036
  1176.  
  1177. error covariance (* 1,000,000)
  1178. 2099 -768 71 -1402
  1179. -768 649 -182 301
  1180. 71 -182 317 -206
  1181. -1402 301 -206 1307
  1182.  
  1183.  
  1184. summ: RISE502 4 0.046572 0.531 0.175 0.238 0.056 2099 -768 71 -1402 649 ...
  1185. -182 301 317 -206 1307
  1186.  
  1187. fixed pat wt dof chisq tail prob
  1188. 0000 0 10 18.536 0.0465722 0.532 0.175 0.238 0.056
  1189. 0001 1 11 20.633 0.0373776 0.592 0.161 0.247 0.000
  1190. 0010 1 11 185.338 0 0.492 0.314 0.000 0.193
  1191. 0100 1 11 63.487 2.0726e-09 0.745 0.000 0.288 -0.033 infeasible
  1192. 1000 1 11 145.455 1.26155e-25 0.000 0.366 0.230 0.404
  1193. 0011 2 12 212.111 0 0.708 0.292 0.000 0.000
  1194. 0101 2 12 66.566 1.3978e-09 0.717 0.000 0.283 0.000
  1195. 0110 2 12 342.900 0 0.923 0.000 0.000 0.077
  1196. 1001 2 12 472.432 0 0.000 0.656 0.344 0.000
  1197. 1010 2 12 279.089 0 0.000 0.496 0.000 0.504
  1198. 1100 2 12 477.743 0 0.000 0.000 0.367 0.633
  1199. 0111 3 13 346.688 0 1.000 0.000 0.000 0.000
  1200. 1011 3 13 662.202 0 0.000 1.000 0.000 0.000
  1201. 1101 3 13 1436.646 0 0.000 0.000 1.000 0.000
  1202. 1110 3 13 853.363 0 0.000 0.000 0.000 1.000
  1203. best pat: 0000 0.0465722 - -
  1204. best pat: 0001 0.0373776 chi(nested): 2.097 p-value for nested model: 0.147548
  1205. best pat: 0101 1.3978e-09 chi(nested): 45.933 p-value for nested model: 1.22357e-11
  1206. best pat: 0111 3.85741e-66 chi(nested): 280.122 p-value for nested model: 7.06333e-63
  1207.  
  1208. coeffs: 0.532 0.175 0.238 0.056
  1209.  
  1210. ## dscore:: f_4(Base, Fit, Rbase, right2)
  1211. ## genstat:: f_4(Base, Fit, right1, right2)
  1212.  
  1213. details: Russia_MLBA_Sintashta Turkey_N.SG 0.001918 5.731592
  1214. details: Russia_Tyumen_HG Turkey_N.SG -0.002330 -5.289593
  1215. details: Mongolia_North_N Turkey_N.SG -0.005557 -15.416165
  1216. details: Iran_C_TepeHissar Turkey_N.SG -0.000318 -0.925914
  1217. dscore: Turkey_N.SG f4: -0.000726 Z: -2.272992
  1218.  
  1219. details: Russia_MLBA_Sintashta Italy_Mesolithic.SG 0.002390 6.320646
  1220. details: Russia_Tyumen_HG Italy_Mesolithic.SG -0.000230 -0.442061
  1221. details: Mongolia_North_N Italy_Mesolithic.SG -0.005811 -14.011417
  1222. details: Iran_C_TepeHissar Italy_Mesolithic.SG -0.003771 -9.431165
  1223. dscore: Italy_Mesolithic.SG f4: -0.000362 Z: -0.985073
  1224.  
  1225. details: Russia_MLBA_Sintashta CHG 0.001694 4.586032
  1226. details: Russia_Tyumen_HG CHG -0.000279 -0.554681
  1227. details: Mongolia_North_N CHG -0.004350 -9.936616
  1228. details: Iran_C_TepeHissar CHG 0.001784 4.341592
  1229. dscore: CHG f4: -0.000082 Z: -0.224133
  1230.  
  1231. details: Russia_MLBA_Sintashta Iran_TepeAbdulHosein_N.SG 0.000497 1.449119
  1232. details: Russia_Tyumen_HG Iran_TepeAbdulHosein_N.SG -0.000386 -0.848606
  1233. details: Mongolia_North_N Iran_TepeAbdulHosein_N.SG -0.003525 -9.423492
  1234. details: Iran_C_TepeHissar Iran_TepeAbdulHosein_N.SG 0.003210 8.738178
  1235. dscore: Iran_TepeAbdulHosein_N.SG f4: -0.000461 Z: -1.387457
  1236.  
  1237. details: Russia_MLBA_Sintashta Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.000741 1.724426
  1238. details: Russia_Tyumen_HG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.005456 9.324985
  1239. details: Mongolia_North_N Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.005636 -12.253125
  1240. details: Iran_C_TepeHissar Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.004307 -9.723342
  1241. dscore: Russia_Arkhangelsk_Veretye_Mesolithic.SG f4: -0.000233 Z: -0.570131
  1242.  
  1243. details: Russia_MLBA_Sintashta Russia_DevilsCave_N.SG -0.004257 -10.871364
  1244. details: Russia_Tyumen_HG Russia_DevilsCave_N.SG -0.001719 -3.368726
  1245. details: Mongolia_North_N Russia_DevilsCave_N.SG 0.009271 21.115408
  1246. details: Iran_C_TepeHissar Russia_DevilsCave_N.SG -0.005636 -13.942730
  1247. dscore: Russia_DevilsCave_N.SG f4: -0.000675 Z: -1.780234
  1248.  
  1249. details: Russia_MLBA_Sintashta South_Africa_400BP.SG -0.000415 -1.779049
  1250. details: Russia_Tyumen_HG South_Africa_400BP.SG -0.000681 -2.196666
  1251. details: Mongolia_North_N South_Africa_400BP.SG -0.000609 -2.356285
  1252. details: Iran_C_TepeHissar South_Africa_400BP.SG -0.000400 -1.621905
  1253. dscore: South_Africa_400BP.SG f4: -0.000507 Z: -2.218707
  1254.  
  1255. details: Russia_MLBA_Sintashta Nepal_Mebrak_2125BP.SG -0.003283 -7.847048
  1256. details: Russia_Tyumen_HG Nepal_Mebrak_2125BP.SG 0.000248 0.452213
  1257. details: Mongolia_North_N Nepal_Mebrak_2125BP.SG 0.008420 18.476437
  1258. details: Iran_C_TepeHissar Nepal_Mebrak_2125BP.SG -0.004362 -10.129745
  1259. dscore: Nepal_Mebrak_2125BP.SG f4: 0.000055 Z: 0.137481
  1260.  
  1261. details: Russia_MLBA_Sintashta Russia_Sunghir_UP.SG 0.000508 1.500876
  1262. details: Russia_Tyumen_HG Russia_Sunghir_UP.SG 0.000859 1.816227
  1263. details: Mongolia_North_N Russia_Sunghir_UP.SG -0.002245 -5.897722
  1264. details: Iran_C_TepeHissar Russia_Sunghir_UP.SG -0.001882 -5.217139
  1265. dscore: Russia_Sunghir_UP.SG f4: -0.000219 Z: -0.665236
  1266.  
  1267. details: Russia_MLBA_Sintashta Russia_Kostenki14.SG -0.000028 -0.069332
  1268. details: Russia_Tyumen_HG Russia_Kostenki14.SG 0.000798 1.432399
  1269. details: Mongolia_North_N Russia_Kostenki14.SG -0.002641 -6.043918
  1270. details: Iran_C_TepeHissar Russia_Kostenki14.SG -0.001845 -4.208112
  1271. dscore: Russia_Kostenki14.SG f4: -0.000607 Z: -1.557247
  1272.  
  1273. details: Russia_MLBA_Sintashta Kazakhstan_Botai_Eneolithic.SG -0.001541 -4.349846
  1274. details: Russia_Tyumen_HG Kazakhstan_Botai_Eneolithic.SG 0.007668 16.547302
  1275. details: Mongolia_North_N Kazakhstan_Botai_Eneolithic.SG -0.003085 -8.014286
  1276. details: Iran_C_TepeHissar Kazakhstan_Botai_Eneolithic.SG -0.005113 -13.549291
  1277. dscore: Kazakhstan_Botai_Eneolithic.SG f4: -0.000499 Z: -1.481846
  1278.  
  1279. details: Russia_MLBA_Sintashta Switzerland_Bichon.SG 0.002229 4.980089
  1280. details: Russia_Tyumen_HG Switzerland_Bichon.SG 0.000127 0.216016
  1281. details: Mongolia_North_N Switzerland_Bichon.SG -0.005340 -10.882700
  1282. details: Iran_C_TepeHissar Switzerland_Bichon.SG -0.003524 -7.536985
  1283. dscore: Switzerland_Bichon.SG f4: -0.000259 Z: -0.598808
  1284.  
  1285. details: Russia_MLBA_Sintashta Spain_HG.SG 0.001904 5.523011
  1286. details: Russia_Tyumen_HG Spain_HG.SG 0.000746 1.551997
  1287. details: Mongolia_North_N Spain_HG.SG -0.004491 -11.933052
  1288. details: Iran_C_TepeHissar Spain_HG.SG -0.003080 -8.575846
  1289. dscore: Spain_HG.SG f4: -0.000097 Z: -0.292030
  1290.  
  1291. gendstat: Cameroon_SMA.SG Turkey_N.SG -2.273
  1292. gendstat: Cameroon_SMA.SG Italy_Mesolithic.SG -0.985
  1293. gendstat: Cameroon_SMA.SG CHG -0.224
  1294. gendstat: Cameroon_SMA.SG Iran_TepeAbdulHosein_N.SG -1.387
  1295. gendstat: Cameroon_SMA.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.570
  1296. gendstat: Cameroon_SMA.SG Russia_DevilsCave_N.SG -1.780
  1297. gendstat: Cameroon_SMA.SG South_Africa_400BP.SG -2.219
  1298. gendstat: Cameroon_SMA.SG Nepal_Mebrak_2125BP.SG 0.137
  1299. gendstat: Cameroon_SMA.SG Russia_Sunghir_UP.SG -0.665
  1300. gendstat: Cameroon_SMA.SG Russia_Kostenki14.SG -1.557
  1301. gendstat: Cameroon_SMA.SG Kazakhstan_Botai_Eneolithic.SG -1.482
  1302. gendstat: Cameroon_SMA.SG Switzerland_Bichon.SG -0.599
  1303. gendstat: Cameroon_SMA.SG Spain_HG.SG -0.292
  1304. gendstat: Turkey_N.SG Italy_Mesolithic.SG 1.141
  1305. gendstat: Turkey_N.SG CHG 1.952
  1306. gendstat: Turkey_N.SG Iran_TepeAbdulHosein_N.SG 0.891
  1307. gendstat: Turkey_N.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 1.262
  1308. gendstat: Turkey_N.SG Russia_DevilsCave_N.SG 0.128
  1309. gendstat: Turkey_N.SG South_Africa_400BP.SG 0.745
  1310. gendstat: Turkey_N.SG Nepal_Mebrak_2125BP.SG 1.843
  1311. gendstat: Turkey_N.SG Russia_Sunghir_UP.SG 1.741
  1312. gendstat: Turkey_N.SG Russia_Kostenki14.SG 0.327
  1313. gendstat: Turkey_N.SG Kazakhstan_Botai_Eneolithic.SG 0.685
  1314. gendstat: Turkey_N.SG Switzerland_Bichon.SG 1.192
  1315. gendstat: Turkey_N.SG Spain_HG.SG 2.178
  1316. gendstat: Italy_Mesolithic.SG CHG 0.739
  1317. gendstat: Italy_Mesolithic.SG Iran_TepeAbdulHosein_N.SG -0.273
  1318. gendstat: Italy_Mesolithic.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.322
  1319. gendstat: Italy_Mesolithic.SG Russia_DevilsCave_N.SG -0.720
  1320. gendstat: Italy_Mesolithic.SG South_Africa_400BP.SG -0.402
  1321. gendstat: Italy_Mesolithic.SG Nepal_Mebrak_2125BP.SG 0.902
  1322. gendstat: Italy_Mesolithic.SG Russia_Sunghir_UP.SG 0.443
  1323. gendstat: Italy_Mesolithic.SG Russia_Kostenki14.SG -0.613
  1324. gendstat: Italy_Mesolithic.SG Kazakhstan_Botai_Eneolithic.SG -0.367
  1325. gendstat: Italy_Mesolithic.SG Switzerland_Bichon.SG 0.310
  1326. gendstat: Italy_Mesolithic.SG Spain_HG.SG 0.983
  1327. gendstat: CHG Iran_TepeAbdulHosein_N.SG -1.141
  1328. gendstat: CHG Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.356
  1329. gendstat: CHG Russia_DevilsCave_N.SG -1.384
  1330. gendstat: CHG South_Africa_400BP.SG -1.239
  1331. gendstat: CHG Nepal_Mebrak_2125BP.SG 0.306
  1332. gendstat: CHG Russia_Sunghir_UP.SG -0.398
  1333. gendstat: CHG Russia_Kostenki14.SG -1.302
  1334. gendstat: CHG Kazakhstan_Botai_Eneolithic.SG -1.153
  1335. gendstat: CHG Switzerland_Bichon.SG -0.414
  1336. gendstat: CHG Spain_HG.SG -0.042
  1337. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Arkhangelsk_Veretye_Mesolithic.SG 0.577
  1338. gendstat: Iran_TepeAbdulHosein_N.SG Russia_DevilsCave_N.SG -0.532
  1339. gendstat: Iran_TepeAbdulHosein_N.SG South_Africa_400BP.SG -0.153
  1340. gendstat: Iran_TepeAbdulHosein_N.SG Nepal_Mebrak_2125BP.SG 1.225
  1341. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Sunghir_UP.SG 0.761
  1342. gendstat: Iran_TepeAbdulHosein_N.SG Russia_Kostenki14.SG -0.384
  1343. gendstat: Iran_TepeAbdulHosein_N.SG Kazakhstan_Botai_Eneolithic.SG -0.118
  1344. gendstat: Iran_TepeAbdulHosein_N.SG Switzerland_Bichon.SG 0.489
  1345. gendstat: Iran_TepeAbdulHosein_N.SG Spain_HG.SG 1.115
  1346. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_DevilsCave_N.SG -0.915
  1347. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG South_Africa_400BP.SG -0.704
  1348. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Nepal_Mebrak_2125BP.SG 0.600
  1349. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_Sunghir_UP.SG 0.036
  1350. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Russia_Kostenki14.SG -0.846
  1351. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Kazakhstan_Botai_Eneolithic.SG -0.739
  1352. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Switzerland_Bichon.SG -0.057
  1353. gendstat: Russia_Arkhangelsk_Veretye_Mesolithic.SG Spain_HG.SG 0.369
  1354. gendstat: Russia_DevilsCave_N.SG South_Africa_400BP.SG 0.463
  1355. gendstat: Russia_DevilsCave_N.SG Nepal_Mebrak_2125BP.SG 1.940
  1356. gendstat: Russia_DevilsCave_N.SG Russia_Sunghir_UP.SG 1.171
  1357. gendstat: Russia_DevilsCave_N.SG Russia_Kostenki14.SG 0.153
  1358. gendstat: Russia_DevilsCave_N.SG Kazakhstan_Botai_Eneolithic.SG 0.463
  1359. gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG 0.857
  1360. gendstat: Russia_DevilsCave_N.SG Spain_HG.SG 1.427
  1361. gendstat: South_Africa_400BP.SG Nepal_Mebrak_2125BP.SG 1.472
  1362. gendstat: South_Africa_400BP.SG Russia_Sunghir_UP.SG 0.925
  1363. gendstat: South_Africa_400BP.SG Russia_Kostenki14.SG -0.267
  1364. gendstat: South_Africa_400BP.SG Kazakhstan_Botai_Eneolithic.SG 0.024
  1365. gendstat: South_Africa_400BP.SG Switzerland_Bichon.SG 0.589
  1366. gendstat: South_Africa_400BP.SG Spain_HG.SG 1.259
  1367. gendstat: Nepal_Mebrak_2125BP.SG Russia_Sunghir_UP.SG -0.647
  1368. gendstat: Nepal_Mebrak_2125BP.SG Russia_Kostenki14.SG -1.379
  1369. gendstat: Nepal_Mebrak_2125BP.SG Kazakhstan_Botai_Eneolithic.SG -1.377
  1370. gendstat: Nepal_Mebrak_2125BP.SG Switzerland_Bichon.SG -0.616
  1371. gendstat: Nepal_Mebrak_2125BP.SG Spain_HG.SG -0.347
  1372. gendstat: Russia_Sunghir_UP.SG Russia_Kostenki14.SG -1.173
  1373. gendstat: Russia_Sunghir_UP.SG Kazakhstan_Botai_Eneolithic.SG -0.859
  1374. gendstat: Russia_Sunghir_UP.SG Switzerland_Bichon.SG -0.106
  1375. gendstat: Russia_Sunghir_UP.SG Spain_HG.SG 0.402
  1376. gendstat: Russia_Kostenki14.SG Kazakhstan_Botai_Eneolithic.SG 0.277
  1377. gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG 0.786
  1378. gendstat: Russia_Kostenki14.SG Spain_HG.SG 1.371
  1379. gendstat: Kazakhstan_Botai_Eneolithic.SG Switzerland_Bichon.SG 0.579
  1380. gendstat: Kazakhstan_Botai_Eneolithic.SG Spain_HG.SG 1.255
  1381. gendstat: Switzerland_Bichon.SG Spain_HG.SG 0.486
  1382.  
  1383. worst Z-score with right hand mix
  1384. f4(Target, Fit, Base, mix of Right pops; Z: -4.219 sum: 1.000
  1385. Turkey_N.SG 0.925
  1386. Italy_Mesolithic.SG 0.272
  1387. CHG -0.485
  1388. Iran_TepeAbdulHosein_N.SG 0.094
  1389. Russia_Arkhangelsk_Veretye_Mesolithic.SG -0.102
  1390. Russia_DevilsCave_N.SG 0.513
  1391. South_Africa_400BP.SG 0.824
  1392. Nepal_Mebrak_2125BP.SG -0.534
  1393. Russia_Sunghir_UP.SG -0.475
  1394. Russia_Kostenki14.SG 0.323
  1395. Kazakhstan_Botai_Eneolithic.SG 0.395
  1396. Switzerland_Bichon.SG -0.005
  1397. Spain_HG.SG -0.746
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