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dosas

dosas=father+mother

dosas
Mar 31st, 2022
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  1. qpAdm: parameter file: parqpadm.txt
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. DIR: /home/ash/host/harvarddata/dosas/new
  5. S1: dosasfamilymerged
  6. indivname: /home/ash/host/harvarddata/dosas/new/dosasfamilymerged.ind
  7. snpname: /home/ash/host/harvarddata/dosas/new/dosasfamilymerged.snp
  8. genotypename: /home/ash/host/harvarddata/dosas/new/dosasfamilymerged.packedancestrymapgeno
  9. popleft: left.txt
  10. popright: right.txt
  11. details: YES
  12. inbreed: NO
  13. allsnps: YES
  14. ## qpAdm version: 1520
  15. seed: 1751917004
  16. inbreed set NO
  17. inbreed set NO
  18. tmp: /tmp/fsx.6657
  19.  
  20. left pops:
  21. dosasnebula
  22. dosasfather
  23. dosasmother
  24.  
  25. right pops:
  26. Mbuti.DG
  27. Russia_HG_Karelia
  28. Morocco_Iberomaurusian
  29. Spain_ElMiron
  30. ONG.SG
  31. Serbia_IronGates_Mesolithic
  32. Jordan_PPNB_published
  33. Iran_GanjDareh_N
  34. Georgia_Kotias.SG
  35. Russia_HG_Tyumen
  36. Tajikistan_C_Sarazm
  37.  
  38. codimension 1
  39. f4info:
  40. f4rank: 1 dof: 9 chisq: 11.520 tail: 0.241723755 dofdiff: 11 chisqdiff: -11.520 taildiff: 1
  41. B:
  42. scale 1.000
  43. Russia_HG_Karelia 1.199
  44. Morocco_Iberomaurusian 0.197
  45. Spain_ElMiron 1.201
  46. ONG.SG -0.055
  47. Serbia_IronGates_Mesolithic 1.931
  48. Jordan_PPNB_published 0.027
  49. Iran_GanjDareh_N -0.683
  50. Georgia_Kotias.SG -0.752
  51. Russia_HG_Tyumen 1.330
  52. Tajikistan_C_Sarazm -0.739
  53. A:
  54. scale 327.238
  55. dosasfather 1.008
  56. dosasmother -0.992
  57.  
  58.  
  59. full rank
  60. f4info:
  61. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 11.520 taildiff: 0.241723755
  62. B:
  63. scale 306.666 331.889
  64. Russia_HG_Karelia 1.053 -1.400
  65. Morocco_Iberomaurusian -0.132 -0.761
  66. Spain_ElMiron 1.277 -0.663
  67. ONG.SG 0.110 0.314
  68. Serbia_IronGates_Mesolithic 1.882 -1.775
  69. Jordan_PPNB_published 0.098 0.458
  70. Iran_GanjDareh_N -0.440 1.174
  71. Georgia_Kotias.SG -0.496 1.147
  72. Russia_HG_Tyumen 1.621 -0.816
  73. Tajikistan_C_Sarazm -0.782 0.450
  74. A:
  75. scale 1.414 1.414
  76. dosasfather 1.414 0.000
  77. dosasmother 0.000 1.414
  78.  
  79.  
  80. best coefficients: 0.496 0.504
  81. totmean: 0.496 0.504
  82. boot mean: 0.495 0.505
  83. std. errors: 0.057 0.057
  84.  
  85. error covariance (* 1,000,000)
  86. 3228 -3228
  87. -3228 3228
  88.  
  89.  
  90. summ: dosasnebula 2 0.241724 0.495 0.505 3228 -3228 3228
  91.  
  92. fixed pat wt dof chisq tail prob
  93. 00 0 9 11.520 0.241724 0.496 0.504
  94. 01 1 10 77.209 1.76471e-12 1.000 0.000
  95. 10 1 10 48.899 4.25018e-07 0.000 1.000
  96. best pat: 00 0.241724 - -
  97. best pat: 10 4.25018e-07 chi(nested): 37.379 p-value for nested model: 9.72672e-10
  98.  
  99. coeffs: 0.496 0.504
  100.  
  101. ## dscore:: f_4(Base, Fit, Rbase, right2)
  102. ## genstat:: f_4(Base, Fit, right1, right2)
  103.  
  104. details: dosasfather Russia_HG_Karelia 0.003434 2.448904
  105. details: dosasmother Russia_HG_Karelia -0.004219 -2.152007
  106. dscore: Russia_HG_Karelia f4: -0.000423 Z: -0.356837
  107.  
  108. details: dosasfather Morocco_Iberomaurusian -0.000430 -0.426722
  109. details: dosasmother Morocco_Iberomaurusian -0.002293 -1.639311
  110. dscore: Morocco_Iberomaurusian f4: -0.001369 Z: -1.563216
  111.  
  112. details: dosasfather Spain_ElMiron 0.004165 2.636402
  113. details: dosasmother Spain_ElMiron -0.001996 -0.899928
  114. dscore: Spain_ElMiron f4: 0.001059 Z: 0.802425
  115.  
  116. details: dosasfather ONG.SG 0.000359 0.336158
  117. details: dosasmother ONG.SG 0.000946 0.641745
  118. dscore: ONG.SG f4: 0.000655 Z: 0.698472
  119.  
  120. details: dosasfather Serbia_IronGates_Mesolithic 0.006136 5.710310
  121. details: dosasmother Serbia_IronGates_Mesolithic -0.005348 -3.663764
  122. dscore: Serbia_IronGates_Mesolithic f4: 0.000348 Z: 0.384511
  123.  
  124. details: dosasfather Jordan_PPNB_published 0.000319 0.200168
  125. details: dosasmother Jordan_PPNB_published 0.001380 0.431135
  126. dscore: Jordan_PPNB_published f4: 0.000854 Z: 0.490995
  127.  
  128. details: dosasfather Iran_GanjDareh_N -0.001435 -1.412800
  129. details: dosasmother Iran_GanjDareh_N 0.003538 2.390964
  130. dscore: Iran_GanjDareh_N f4: 0.001072 Z: 1.178337
  131.  
  132. details: dosasfather Georgia_Kotias.SG -0.001618 -1.143107
  133. details: dosasmother Georgia_Kotias.SG 0.003455 1.813673
  134. dscore: Georgia_Kotias.SG f4: 0.000939 Z: 0.776838
  135.  
  136. details: dosasfather Russia_HG_Tyumen 0.005287 3.450855
  137. details: dosasmother Russia_HG_Tyumen -0.002459 -1.216749
  138. dscore: Russia_HG_Tyumen f4: 0.001383 Z: 1.080491
  139.  
  140. details: dosasfather Tajikistan_C_Sarazm -0.002549 -1.975481
  141. details: dosasmother Tajikistan_C_Sarazm 0.001355 0.761849
  142. dscore: Tajikistan_C_Sarazm f4: -0.000582 Z: -0.530595
  143.  
  144. gendstat: Mbuti.DG Russia_HG_Karelia -0.357
  145. gendstat: Mbuti.DG Morocco_Iberomaurusian -1.563
  146. gendstat: Mbuti.DG Spain_ElMiron 0.802
  147. gendstat: Mbuti.DG ONG.SG 0.698
  148. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic 0.385
  149. gendstat: Mbuti.DG Jordan_PPNB_published 0.491
  150. gendstat: Mbuti.DG Iran_GanjDareh_N 1.178
  151. gendstat: Mbuti.DG Georgia_Kotias.SG 0.777
  152. gendstat: Mbuti.DG Russia_HG_Tyumen 1.080
  153. gendstat: Mbuti.DG Tajikistan_C_Sarazm -0.531
  154. gendstat: Russia_HG_Karelia Morocco_Iberomaurusian -0.780
  155. gendstat: Russia_HG_Karelia Spain_ElMiron 0.981
  156. gendstat: Russia_HG_Karelia ONG.SG 0.895
  157. gendstat: Russia_HG_Karelia Serbia_IronGates_Mesolithic 0.736
  158. gendstat: Russia_HG_Karelia Jordan_PPNB_published 0.698
  159. gendstat: Russia_HG_Karelia Iran_GanjDareh_N 1.273
  160. gendstat: Russia_HG_Karelia Georgia_Kotias.SG 1.007
  161. gendstat: Russia_HG_Karelia Russia_HG_Tyumen 1.303
  162. gendstat: Russia_HG_Karelia Tajikistan_C_Sarazm -0.129
  163. gendstat: Morocco_Iberomaurusian Spain_ElMiron 1.778
  164. gendstat: Morocco_Iberomaurusian ONG.SG 1.927
  165. gendstat: Morocco_Iberomaurusian Serbia_IronGates_Mesolithic 1.869
  166. gendstat: Morocco_Iberomaurusian Jordan_PPNB_published 1.263
  167. gendstat: Morocco_Iberomaurusian Iran_GanjDareh_N 2.515
  168. gendstat: Morocco_Iberomaurusian Georgia_Kotias.SG 1.818
  169. gendstat: Morocco_Iberomaurusian Russia_HG_Tyumen 2.112
  170. gendstat: Morocco_Iberomaurusian Tajikistan_C_Sarazm 0.698
  171. gendstat: Spain_ElMiron ONG.SG -0.292
  172. gendstat: Spain_ElMiron Serbia_IronGates_Mesolithic -0.612
  173. gendstat: Spain_ElMiron Jordan_PPNB_published -0.104
  174. gendstat: Spain_ElMiron Iran_GanjDareh_N 0.009
  175. gendstat: Spain_ElMiron Georgia_Kotias.SG -0.076
  176. gendstat: Spain_ElMiron Russia_HG_Tyumen 0.220
  177. gendstat: Spain_ElMiron Tajikistan_C_Sarazm -1.153
  178. gendstat: ONG.SG Serbia_IronGates_Mesolithic -0.324
  179. gendstat: ONG.SG Jordan_PPNB_published 0.109
  180. gendstat: ONG.SG Iran_GanjDareh_N 0.427
  181. gendstat: ONG.SG Georgia_Kotias.SG 0.224
  182. gendstat: ONG.SG Russia_HG_Tyumen 0.582
  183. gendstat: ONG.SG Tajikistan_C_Sarazm -1.137
  184. gendstat: Serbia_IronGates_Mesolithic Jordan_PPNB_published 0.299
  185. gendstat: Serbia_IronGates_Mesolithic Iran_GanjDareh_N 0.796
  186. gendstat: Serbia_IronGates_Mesolithic Georgia_Kotias.SG 0.504
  187. gendstat: Serbia_IronGates_Mesolithic Russia_HG_Tyumen 0.893
  188. gendstat: Serbia_IronGates_Mesolithic Tajikistan_C_Sarazm -0.886
  189. gendstat: Jordan_PPNB_published Iran_GanjDareh_N 0.124
  190. gendstat: Jordan_PPNB_published Georgia_Kotias.SG 0.045
  191. gendstat: Jordan_PPNB_published Russia_HG_Tyumen 0.267
  192. gendstat: Jordan_PPNB_published Tajikistan_C_Sarazm -0.784
  193. gendstat: Iran_GanjDareh_N Georgia_Kotias.SG -0.121
  194. gendstat: Iran_GanjDareh_N Russia_HG_Tyumen 0.245
  195. gendstat: Iran_GanjDareh_N Tajikistan_C_Sarazm -1.718
  196. gendstat: Georgia_Kotias.SG Russia_HG_Tyumen 0.294
  197. gendstat: Georgia_Kotias.SG Tajikistan_C_Sarazm -1.249
  198. gendstat: Russia_HG_Tyumen Tajikistan_C_Sarazm -1.495
  199.  
  200. removing /tmp/fsx.6657
  201. ##end of qpAdm: 1.639 seconds cpu 0.319 Mbytes in use
  202.  
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