Guest User

Untitled

a guest
Feb 24th, 2018
83
0
Never
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 0.50 KB | None | 0 0
  1. library('RISmed')
  2.  
  3. getPubmedData <- function(searchString, fileName){
  4.  
  5. print('Geting summary')
  6. search_query <- EUtilsSummary(searchString, retmax=100)
  7. summary(search_query)
  8.  
  9. print("Retriving NCBI records")
  10. records<- EUtilsGet(search_query)
  11. class(records)
  12.  
  13. pubmed_data <- data.frame('PMID'=PMID(records),'Title'=ArticleTitle(records),'Abstract'=AbstractText(records))
  14.  
  15. print('Writing to file - PubmedData.csv')
  16. write.csv(pubmed_data, file = paste(fileName, '.csv'))
  17.  
  18. return(pubmed_data)
  19. }
Add Comment
Please, Sign In to add comment