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misnomer001

spgt_o dali

misnomer001
Mar 14th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1621419102
  4. read 1073741824 bytes
  5. read 2057898697 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. SPGT_o
  11. Uzbekistan_BA_Dzharkutan1
  12. Kazakhstan_MLBA_Dali
  13. SPGT
  14.  
  15. right pops:
  16. Cameroon_SMA.DG
  17. EEHG
  18. WSHG
  19. PPN
  20. WEHG
  21. Anatolia_N
  22. Iran_GanjDareh_N
  23. Russia_UstBelaya_Angara
  24. ONG.SG
  25. Botai
  26.  
  27. 0 SPGT_o 2
  28. 1 Uzbekistan_BA_Dzharkutan1 7
  29. 2 Kazakhstan_MLBA_Dali 3
  30. 3 SPGT 78
  31. 4 Cameroon_SMA.DG 1
  32. 5 EEHG 5
  33. 6 WSHG 3
  34. 7 PPN 11
  35. 8 WEHG 33
  36. 9 Anatolia_N 22
  37. 10 Iran_GanjDareh_N 8
  38. 11 Russia_UstBelaya_Angara 8
  39. 12 ONG.SG 6
  40. 13 Botai 2
  41. jackknife block size: 0.050
  42. snps: 1150507 indivs: 189
  43. number of blocks for block jackknife: 713
  44. ## ncols: 1150507
  45. coverage: SPGT_o 673520
  46. coverage: Uzbekistan_BA_Dzharkutan1 1054006
  47. coverage: Kazakhstan_MLBA_Dali 931588
  48. coverage: SPGT 1133349
  49. coverage: Cameroon_SMA.DG 1140138
  50. coverage: EEHG 1052093
  51. coverage: WSHG 858019
  52. coverage: PPN 847771
  53. coverage: WEHG 1140599
  54. coverage: Anatolia_N 1139031
  55. coverage: Iran_GanjDareh_N 1057358
  56. coverage: Russia_UstBelaya_Angara 1072574
  57. coverage: ONG.SG 1143397
  58. coverage: Botai 926654
  59. dof (jackknife): 623.493
  60. numsnps used: 1150507
  61. codimension 1
  62. f4info:
  63. f4rank: 2 dof: 7 chisq: 4.250 tail: 0.750551543 dofdiff: 9 chisqdiff: -4.250 taildiff: 1
  64. B:
  65. scale 1.000 1.000
  66. EEHG 1.471 0.046
  67. WSHG 1.160 -0.196
  68. PPN 0.444 1.227
  69. WEHG 1.709 0.194
  70. Anatolia_N 0.762 1.226
  71. Iran_GanjDareh_N -0.511 1.818
  72. Russia_UstBelaya_Angara 0.478 -1.040
  73. ONG.SG 0.070 -1.188
  74. Botai 1.139 -0.342
  75. A:
  76. scale 688.394 2011.729
  77. Uzbekistan_BA_Dzharkutan1 -0.652 1.575
  78. Kazakhstan_MLBA_Dali 1.477 0.165
  79. SPGT -0.626 -0.702
  80.  
  81.  
  82. full rank
  83. f4info:
  84. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 7 chisqdiff: 4.250 taildiff: 0.750551543
  85. B:
  86. scale 887.048 407.698 1338.388
  87. EEHG -0.925 1.435 -1.393
  88. WSHG -0.762 1.195 -0.785
  89. PPN 0.811 0.596 -0.618
  90. WEHG -1.102 1.607 -1.885
  91. Anatolia_N 0.463 0.843 -1.113
  92. Iran_GanjDareh_N 1.952 -0.241 0.170
  93. Russia_UstBelaya_Angara -0.722 0.603 0.514
  94. ONG.SG -0.696 0.124 0.761
  95. Botai -0.812 1.195 -0.629
  96. A:
  97. scale 1.732 1.732 1.732
  98. Uzbekistan_BA_Dzharkutan1 1.732 0.000 0.000
  99. Kazakhstan_MLBA_Dali 0.000 1.732 0.000
  100. SPGT 0.000 0.000 1.732
  101.  
  102.  
  103. best coefficients: 0.194 0.300 0.506
  104. Jackknife mean: 0.193850861 0.299931624 0.506217515
  105. std. errors: 0.067 0.037 0.082
  106.  
  107. error covariance (* 1,000,000)
  108. 4484 418 -4902
  109. 418 1356 -1774
  110. -4902 -1774 6675
  111.  
  112.  
  113. summ: SPGT_o 3 0.750552 0.194 0.300 0.506 4484 418 -4902 1356 -1774 ...
  114. 6675
  115.  
  116. fixed pat wt dof chisq tail prob
  117. 000 0 7 4.250 0.750552 0.194 0.300 0.506
  118. 001 1 8 39.967 3.24874e-06 0.558 0.442 0.000
  119. 010 1 8 70.006 4.90106e-12 0.088 0.000 0.912
  120. 100 1 8 12.861 0.11673 0.000 0.282 0.718
  121. 011 2 9 226.680 0 1.000 0.000 0.000
  122. 101 2 9 274.127 0 0.000 1.000 0.000
  123. 110 2 9 71.548 7.56389e-12 0.000 0.000 1.000
  124. best pat: 000 0.750552 - -
  125. best pat: 100 0.11673 chi(nested): 8.611 p-value for nested model: 0.00334211
  126. best pat: 110 7.56389e-12 chi(nested): 58.687 p-value for nested model: 1.84843e-14
  127.  
  128. coeffs: 0.194 0.300 0.506
  129.  
  130. ## dscore:: f_4(Base, Fit, Rbase, right2)
  131. ## genstat:: f_4(Base, Fit, right1, right2)
  132.  
  133. details: Uzbekistan_BA_Dzharkutan1 EEHG -0.001043 -3.216774
  134. details: Kazakhstan_MLBA_Dali EEHG 0.003520 9.631785
  135. details: SPGT EEHG -0.001041 -3.418256
  136. dscore: EEHG f4: 0.000327 Z: 1.078383
  137.  
  138. details: Uzbekistan_BA_Dzharkutan1 WSHG -0.000859 -2.334684
  139. details: Kazakhstan_MLBA_Dali WSHG 0.002932 6.999367
  140. details: SPGT WSHG -0.000587 -1.676824
  141. dscore: WSHG f4: 0.000416 Z: 1.194675
  142.  
  143. details: Uzbekistan_BA_Dzharkutan1 PPN 0.000914 2.799940
  144. details: Kazakhstan_MLBA_Dali PPN 0.001461 3.963811
  145. details: SPGT PPN -0.000462 -1.508224
  146. dscore: PPN f4: 0.000382 Z: 1.248833
  147.  
  148. details: Uzbekistan_BA_Dzharkutan1 WEHG -0.001243 -3.891040
  149. details: Kazakhstan_MLBA_Dali WEHG 0.003941 11.006771
  150. details: SPGT WEHG -0.001409 -4.756945
  151. dscore: WEHG f4: 0.000229 Z: 0.771605
  152.  
  153. details: Uzbekistan_BA_Dzharkutan1 Anatolia_N 0.000522 1.887282
  154. details: Kazakhstan_MLBA_Dali Anatolia_N 0.002067 6.596968
  155. details: SPGT Anatolia_N -0.000832 -3.239060
  156. dscore: Anatolia_N f4: 0.000301 Z: 1.178462
  157.  
  158. details: Uzbekistan_BA_Dzharkutan1 Iran_GanjDareh_N 0.002200 7.583384
  159. details: Kazakhstan_MLBA_Dali Iran_GanjDareh_N -0.000591 -1.824569
  160. details: SPGT Iran_GanjDareh_N 0.000127 0.473497
  161. dscore: Iran_GanjDareh_N f4: 0.000314 Z: 1.174571
  162.  
  163. details: Uzbekistan_BA_Dzharkutan1 Russia_UstBelaya_Angara -0.000814 -2.817918
  164. details: Kazakhstan_MLBA_Dali Russia_UstBelaya_Angara 0.001479 4.453301
  165. details: SPGT Russia_UstBelaya_Angara 0.000384 1.384942
  166. dscore: Russia_UstBelaya_Angara f4: 0.000480 Z: 1.756849
  167.  
  168. details: Uzbekistan_BA_Dzharkutan1 ONG.SG -0.000784 -2.661710
  169. details: Kazakhstan_MLBA_Dali ONG.SG 0.000305 0.890252
  170. details: SPGT ONG.SG 0.000568 2.015949
  171. dscore: ONG.SG f4: 0.000227 Z: 0.807029
  172.  
  173. details: Uzbekistan_BA_Dzharkutan1 Botai -0.000915 -2.715354
  174. details: Kazakhstan_MLBA_Dali Botai 0.002931 7.425557
  175. details: SPGT Botai -0.000470 -1.438757
  176. dscore: Botai f4: 0.000464 Z: 1.435066
  177.  
  178. gendstat: Cameroon_SMA.DG EEHG 1.078
  179. gendstat: Cameroon_SMA.DG WSHG 1.195
  180. gendstat: Cameroon_SMA.DG PPN 1.249
  181. gendstat: Cameroon_SMA.DG WEHG 0.772
  182. gendstat: Cameroon_SMA.DG Anatolia_N 1.178
  183. gendstat: Cameroon_SMA.DG Iran_GanjDareh_N 1.175
  184. gendstat: Cameroon_SMA.DG Russia_UstBelaya_Angara 1.757
  185. gendstat: Cameroon_SMA.DG ONG.SG 0.807
  186. gendstat: Cameroon_SMA.DG Botai 1.435
  187. gendstat: EEHG WSHG 0.330
  188. gendstat: EEHG PPN 0.184
  189. gendstat: EEHG WEHG -0.427
  190. gendstat: EEHG Anatolia_N -0.109
  191. gendstat: EEHG Iran_GanjDareh_N -0.049
  192. gendstat: EEHG Russia_UstBelaya_Angara 0.574
  193. gendstat: EEHG ONG.SG -0.332
  194. gendstat: EEHG Botai 0.506
  195. gendstat: WSHG PPN -0.102
  196. gendstat: WSHG WEHG -0.640
  197. gendstat: WSHG Anatolia_N -0.387
  198. gendstat: WSHG Iran_GanjDareh_N -0.333
  199. gendstat: WSHG Russia_UstBelaya_Angara 0.229
  200. gendstat: WSHG ONG.SG -0.568
  201. gendstat: WSHG Botai 0.173
  202. gendstat: PPN WEHG -0.610
  203. gendstat: PPN Anatolia_N -0.420
  204. gendstat: PPN Iran_GanjDareh_N -0.252
  205. gendstat: PPN Russia_UstBelaya_Angara 0.329
  206. gendstat: PPN ONG.SG -0.481
  207. gendstat: PPN Botai 0.253
  208. gendstat: WEHG Anatolia_N 0.368
  209. gendstat: WEHG Iran_GanjDareh_N 0.321
  210. gendstat: WEHG Russia_UstBelaya_Angara 0.967
  211. gendstat: WEHG ONG.SG -0.007
  212. gendstat: WEHG Botai 0.823
  213. gendstat: Anatolia_N Iran_GanjDareh_N 0.060
  214. gendstat: Anatolia_N Russia_UstBelaya_Angara 0.723
  215. gendstat: Anatolia_N ONG.SG -0.273
  216. gendstat: Anatolia_N Botai 0.575
  217. gendstat: Iran_GanjDareh_N Russia_UstBelaya_Angara 0.646
  218. gendstat: Iran_GanjDareh_N ONG.SG -0.309
  219. gendstat: Iran_GanjDareh_N Botai 0.516
  220. gendstat: Russia_UstBelaya_Angara ONG.SG -1.054
  221. gendstat: Russia_UstBelaya_Angara Botai -0.062
  222. gendstat: ONG.SG Botai 0.765
  223.  
  224. ##end of qpAdm: 393.203 seconds cpu 1257.619 Mbytes in use
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