misnomer001

Areni fail wothout Khvalysnk

Jan 5th, 2020
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  1. ### THE INPUT PARAMETERS
  2. ##PARAMETER NAME: VALUE
  3. allsnps: YES
  4. ## qpAdm version: 810
  5. seed: 1641942531
  6.  
  7. left pops:
  8. Armenia_C
  9. Anatolia_N
  10. Caucasus_Eneolithic
  11. Geoksyur_EN
  12.  
  13. right pops:
  14. Mbuti.DG
  15. Morocco_Iberomaurusian
  16. Ganj_Dareh_N
  17. PPN
  18. Anatolia_Meso
  19. Iberia_MN
  20. Russia_MA1.SG
  21. Georgia_Kotias.SG
  22. Kostenki14.SG
  23. Russia_Karelia_HG
  24. Serbia_Iron_Gates_HG
  25. Tyumen_HG
  26. Onge.DG
  27.  
  28. 0 Armenia_C 5
  29. 1 Anatolia_N 22
  30. 2 Caucasus_Eneolithic 3
  31. 3 Geoksyur_EN 21
  32. 4 Mbuti.DG 5
  33. 5 Morocco_Iberomaurusian 6
  34. 6 Ganj_Dareh_N 7
  35. 7 PPN 8
  36. 8 Anatolia_Meso 1
  37. 9 Iberia_MN 4
  38. 10 Russia_MA1.SG 1
  39. 11 Georgia_Kotias.SG 1
  40. 12 Kostenki14.SG 1
  41. 13 Russia_Karelia_HG 2
  42. 14 Serbia_Iron_Gates_HG 32
  43. 15 Tyumen_HG 2
  44. 16 Onge.DG 2
  45. jackknife block size: 0.050
  46. snps: 1150526 indivs: 123
  47. number of blocks for block jackknife: 552
  48. ## ncols: 1150526
  49. coverage: Armenia_C 1033326
  50. coverage: Anatolia_N 1134099
  51. coverage: Caucasus_Eneolithic 784983
  52. coverage: Geoksyur_EN 1018577
  53. coverage: Mbuti.DG 1150376
  54. coverage: Morocco_Iberomaurusian 1101342
  55. coverage: Ganj_Dareh_N 1029695
  56. coverage: PPN 835499
  57. coverage: Anatolia_Meso 989345
  58. coverage: Iberia_MN 967760
  59. coverage: Russia_MA1.SG 805960
  60. coverage: Georgia_Kotias.SG 1149097
  61. coverage: Kostenki14.SG 1048972
  62. coverage: Russia_Karelia_HG 1010733
  63. coverage: Serbia_Iron_Gates_HG 1139259
  64. coverage: Tyumen_HG 807474
  65. coverage: Onge.DG 1120748
  66. dof (jackknife): 466.274
  67. numsnps used: 1150526
  68. codimension 1
  69. f4info:
  70. f4rank: 2 dof: 10 chisq: 108.677 tail: 9.86123842e-19 dofdiff: 12 chisqdiff: -108.677 taildiff: 1
  71. B:
  72. scale 1.000 1.000
  73. Morocco_Iberomaurusian 0.683 0.377
  74. Ganj_Dareh_N -1.152 -1.319
  75. PPN 1.395 -0.385
  76. Anatolia_Meso 2.011 -0.228
  77. Iberia_MN 1.502 0.302
  78. Russia_MA1.SG -0.464 0.008
  79. Georgia_Kotias.SG -0.691 2.871
  80. Kostenki14.SG 0.383 0.322
  81. Russia_Karelia_HG -0.151 0.801
  82. Serbia_Iron_Gates_HG 0.785 0.908
  83. Tyumen_HG -0.677 -0.065
  84. Onge.DG -0.154 -0.099
  85. A:
  86. scale 542.282 1885.993
  87. Anatolia_N 1.220 -0.604
  88. Caucasus_Eneolithic -0.425 1.205
  89. Geoksyur_EN -1.154 -1.088
  90.  
  91.  
  92. full rank
  93. f4info:
  94. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 108.677 taildiff: 9.86123842e-19
  95. B:
  96. scale 1.000 1.000 1.000
  97. Morocco_Iberomaurusian 0.698 0.126 0.218
  98. Ganj_Dareh_N -1.167 -0.282 -1.395
  99. PPN 1.408 -0.347 -0.171
  100. Anatolia_Meso 1.990 -0.229 -0.024
  101. Iberia_MN 1.520 -0.104 0.313
  102. Russia_MA1.SG -0.456 1.290 0.146
  103. Georgia_Kotias.SG -0.671 -1.661 2.727
  104. Kostenki14.SG 0.393 0.794 0.450
  105. Russia_Karelia_HG -0.097 1.667 1.081
  106. Serbia_Iron_Gates_HG 0.815 0.634 0.996
  107. Tyumen_HG -0.624 1.867 0.097
  108. Onge.DG -0.151 0.071 -0.221
  109. A:
  110. scale 538.377 1291.023 1716.832
  111. Anatolia_N 1.236 -0.805 -0.804
  112. Caucasus_Eneolithic -0.465 -1.388 0.930
  113. Geoksyur_EN -1.121 -0.654 -1.220
  114.  
  115.  
  116. best coefficients: 0.364 0.398 0.238
  117. Jackknife mean: 0.364838693 0.398592987 0.236568320
  118. std. errors: 0.048 0.117 0.073
  119.  
  120. error covariance (* 1000000)
  121. 2348 -5395 3047
  122. -5395 13783 -8387
  123. 3047 -8387 5340
  124.  
  125.  
  126. summ: Armenia_C 3 0.000000 0.365 0.399 0.237 2348 -5395 3047 13783 -8387 5340
  127.  
  128. fixed pat wt dof chisq tail prob
  129. 000 0 10 108.677 9.86124e-19 0.364 0.398 0.238
  130. 001 1 11 124.442 2.31033e-21 0.249 0.751 -0.000
  131. 010 1 11 150.196 1.3591e-26 0.510 -0.000 0.490
  132. 100 1 11 155.200 1.28755e-27 0.000 1.253 -0.253 infeasible
  133. 011 2 12 1164.069 0 1.000 -0.000 -0.000
  134. 101 2 12 172.409 1.53417e-30 0.000 1.000 -0.000
  135. 110 2 12 1076.649 0 0.000 -0.000 1.000
  136. best pat: 000 9.86124e-19 - -
  137. best pat: 001 2.31033e-21 chi(nested): 15.765 p-value for nested model: 7.1706e-05
  138. best pat: 101 1.53417e-30 chi(nested): 47.967 p-value for nested model: 4.33347e-12
  139.  
  140. coeffs: 0.364 0.398 0.238
  141.  
  142. ## dscore:: f_4(Base, Fit, Rbase, right2)
  143. ## genstat:: f_4(Base, Fit, right1, right2)
  144.  
  145. details: Anatolia_N Morocco_Iberomaurusian 0.001376 7.133473
  146. details: Caucasus_Eneolithic Morocco_Iberomaurusian -0.000683 -2.269092
  147. details: Geoksyur_EN Morocco_Iberomaurusian -0.001745 -7.945052
  148. dscore: Morocco_Iberomaurusian f4: -0.000186 Z: -0.965741
  149.  
  150. details: Anatolia_N Ganj_Dareh_N -0.001926 -9.614979
  151. details: Caucasus_Eneolithic Ganj_Dareh_N 0.000486 1.501309
  152. details: Geoksyur_EN Ganj_Dareh_N 0.003445 14.487010
  153. dscore: Ganj_Dareh_N f4: 0.000313 Z: 1.515241
  154.  
  155. details: Anatolia_N PPN 0.003455 17.004860
  156. details: Caucasus_Eneolithic PPN -0.001017 -3.145608
  157. details: Geoksyur_EN PPN -0.002757 -12.078193
  158. dscore: PPN f4: 0.000197 Z: 0.948479
  159.  
  160. details: Anatolia_N Anatolia_Meso 0.004670 17.009689
  161. details: Caucasus_Eneolithic Anatolia_Meso -0.001520 -3.656749
  162. details: Geoksyur_EN Anatolia_Meso -0.004112 -14.431270
  163. dscore: Anatolia_Meso f4: 0.000116 Z: 0.431086
  164.  
  165. details: Anatolia_N Iberia_MN 0.003344 16.404286
  166. details: Caucasus_Eneolithic Iberia_MN -0.001108 -3.395718
  167. details: Geoksyur_EN Iberia_MN -0.003437 -15.634774
  168. dscore: Iberia_MN f4: -0.000042 Z: -0.207962
  169.  
  170. details: Anatolia_N Russia_MA1.SG -0.002019 -7.552083
  171. details: Caucasus_Eneolithic Russia_MA1.SG -0.001000 -2.701491
  172. details: Geoksyur_EN Russia_MA1.SG 0.000075 0.268405
  173. dscore: Russia_MA1.SG f4: -0.001115 Z: -4.505074
  174.  
  175. details: Anatolia_N Georgia_Kotias.SG -0.001867 -6.940442
  176. details: Caucasus_Eneolithic Georgia_Kotias.SG 0.003788 9.198618
  177. details: Geoksyur_EN Georgia_Kotias.SG 0.000176 0.611298
  178. dscore: Georgia_Kotias.SG f4: 0.000869 Z: 3.257061
  179.  
  180. details: Anatolia_N Kostenki14.SG 0.000109 0.399098
  181. details: Caucasus_Eneolithic Kostenki14.SG -0.001016 -2.671709
  182. details: Geoksyur_EN Kostenki14.SG -0.001653 -6.082885
  183. dscore: Kostenki14.SG f4: -0.000758 Z: -3.056312
  184.  
  185. details: Anatolia_N Russia_Karelia_HG -0.001858 -6.999823
  186. details: Caucasus_Eneolithic Russia_Karelia_HG -0.001201 -2.962584
  187. details: Geoksyur_EN Russia_Karelia_HG -0.001548 -5.243024
  188. dscore: Russia_Karelia_HG f4: -0.001523 Z: -5.812195
  189.  
  190. details: Anatolia_N Serbia_Iron_Gates_HG 0.000931 4.469957
  191. details: Caucasus_Eneolithic Serbia_Iron_Gates_HG -0.000942 -2.902746
  192. details: Geoksyur_EN Serbia_Iron_Gates_HG -0.002842 -12.968057
  193. dscore: Serbia_Iron_Gates_HG f4: -0.000713 Z: -3.441747
  194.  
  195. details: Anatolia_N Tyumen_HG -0.002723 -10.691204
  196. details: Caucasus_Eneolithic Tyumen_HG -0.001520 -3.793735
  197. details: Geoksyur_EN Tyumen_HG 0.000169 0.601856
  198. dscore: Tyumen_HG f4: -0.001556 Z: -6.092008
  199.  
  200. details: Anatolia_N Onge.DG -0.000364 -1.602623
  201. details: Caucasus_Eneolithic Onge.DG -0.000166 -0.512798
  202. details: Geoksyur_EN Onge.DG 0.000318 1.300071
  203. dscore: Onge.DG f4: -0.000123 Z: -0.563060
  204.  
  205. gendstat: Mbuti.DG Morocco_Iberomaurusian -0.966
  206. gendstat: Mbuti.DG Ganj_Dareh_N 1.515
  207. gendstat: Mbuti.DG PPN 0.948
  208. gendstat: Mbuti.DG Anatolia_Meso 0.431
  209. gendstat: Mbuti.DG Iberia_MN -0.208
  210. gendstat: Mbuti.DG Russia_MA1.SG -4.505
  211. gendstat: Mbuti.DG Georgia_Kotias.SG 3.257
  212. gendstat: Mbuti.DG Kostenki14.SG -3.056
  213. gendstat: Mbuti.DG Russia_Karelia_HG -5.812
  214. gendstat: Mbuti.DG Serbia_Iron_Gates_HG -3.442
  215. gendstat: Mbuti.DG Tyumen_HG -6.092
  216. gendstat: Mbuti.DG Onge.DG -0.563
  217. gendstat: Morocco_Iberomaurusian Ganj_Dareh_N 2.256
  218. gendstat: Morocco_Iberomaurusian PPN 1.772
  219. gendstat: Morocco_Iberomaurusian Anatolia_Meso 1.095
  220. gendstat: Morocco_Iberomaurusian Iberia_MN 0.694
  221. gendstat: Morocco_Iberomaurusian Russia_MA1.SG -3.470
  222. gendstat: Morocco_Iberomaurusian Georgia_Kotias.SG 3.643
  223. gendstat: Morocco_Iberomaurusian Kostenki14.SG -2.188
  224. gendstat: Morocco_Iberomaurusian Russia_Karelia_HG -4.965
  225. gendstat: Morocco_Iberomaurusian Serbia_Iron_Gates_HG -2.461
  226. gendstat: Morocco_Iberomaurusian Tyumen_HG -4.913
  227. gendstat: Morocco_Iberomaurusian Onge.DG 0.273
  228. gendstat: Ganj_Dareh_N PPN -0.494
  229. gendstat: Ganj_Dareh_N Anatolia_Meso -0.685
  230. gendstat: Ganj_Dareh_N Iberia_MN -1.574
  231. gendstat: Ganj_Dareh_N Russia_MA1.SG -5.375
  232. gendstat: Ganj_Dareh_N Georgia_Kotias.SG 2.145
  233. gendstat: Ganj_Dareh_N Kostenki14.SG -4.110
  234. gendstat: Ganj_Dareh_N Russia_Karelia_HG -6.938
  235. gendstat: Ganj_Dareh_N Serbia_Iron_Gates_HG -4.766
  236. gendstat: Ganj_Dareh_N Tyumen_HG -7.030
  237. gendstat: Ganj_Dareh_N Onge.DG -1.872
  238. gendstat: PPN Anatolia_Meso -0.309
  239. gendstat: PPN Iberia_MN -1.245
  240. gendstat: PPN Russia_MA1.SG -4.761
  241. gendstat: PPN Georgia_Kotias.SG 2.337
  242. gendstat: PPN Kostenki14.SG -3.536
  243. gendstat: PPN Russia_Karelia_HG -6.215
  244. gendstat: PPN Serbia_Iron_Gates_HG -4.374
  245. gendstat: PPN Tyumen_HG -6.072
  246. gendstat: PPN Onge.DG -1.262
  247. gendstat: Anatolia_Meso Iberia_MN -0.599
  248. gendstat: Anatolia_Meso Russia_MA1.SG -3.815
  249. gendstat: Anatolia_Meso Georgia_Kotias.SG 2.280
  250. gendstat: Anatolia_Meso Kostenki14.SG -2.728
  251. gendstat: Anatolia_Meso Russia_Karelia_HG -5.078
  252. gendstat: Anatolia_Meso Serbia_Iron_Gates_HG -3.114
  253. gendstat: Anatolia_Meso Tyumen_HG -5.085
  254. gendstat: Anatolia_Meso Onge.DG -0.801
  255. gendstat: Iberia_MN Russia_MA1.SG -4.113
  256. gendstat: Iberia_MN Georgia_Kotias.SG 3.382
  257. gendstat: Iberia_MN Kostenki14.SG -2.810
  258. gendstat: Iberia_MN Russia_Karelia_HG -5.502
  259. gendstat: Iberia_MN Serbia_Iron_Gates_HG -3.772
  260. gendstat: Iberia_MN Tyumen_HG -5.566
  261. gendstat: Iberia_MN Onge.DG -0.346
  262. gendstat: Russia_MA1.SG Georgia_Kotias.SG 6.267
  263. gendstat: Russia_MA1.SG Kostenki14.SG 1.243
  264. gendstat: Russia_MA1.SG Russia_Karelia_HG -1.548
  265. gendstat: Russia_MA1.SG Serbia_Iron_Gates_HG 1.728
  266. gendstat: Russia_MA1.SG Tyumen_HG -1.607
  267. gendstat: Russia_MA1.SG Onge.DG 3.781
  268. gendstat: Georgia_Kotias.SG Kostenki14.SG -5.232
  269. gendstat: Georgia_Kotias.SG Russia_Karelia_HG -7.496
  270. gendstat: Georgia_Kotias.SG Serbia_Iron_Gates_HG -5.810
  271. gendstat: Georgia_Kotias.SG Tyumen_HG -7.883
  272. gendstat: Georgia_Kotias.SG Onge.DG -3.450
  273. gendstat: Kostenki14.SG Russia_Karelia_HG -2.566
  274. gendstat: Kostenki14.SG Serbia_Iron_Gates_HG 0.195
  275. gendstat: Kostenki14.SG Tyumen_HG -2.759
  276. gendstat: Kostenki14.SG Onge.DG 2.400
  277. gendstat: Russia_Karelia_HG Serbia_Iron_Gates_HG 3.618
  278. gendstat: Russia_Karelia_HG Tyumen_HG -0.125
  279. gendstat: Russia_Karelia_HG Onge.DG 5.206
  280. gendstat: Serbia_Iron_Gates_HG Tyumen_HG -3.593
  281. gendstat: Serbia_Iron_Gates_HG Onge.DG 2.693
  282. gendstat: Tyumen_HG Onge.DG 5.223
  283.  
  284. ## end of run
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