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misnomer001

Sarazm pass

misnomer001
Aug 2nd, 2022 (edited)
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. popleft: left
  5. popright: right
  6. details: YES
  7. allsnps: YES
  8. inbreed: NO
  9. oldallsnps: NO
  10. S1: newpush
  11. S1X: newpush
  12. indivname: newpush.ind
  13. snpname: newpush.snp
  14. genotypename: newpush.geno
  15. ## qpAdm version: 1520
  16. seed: 1165235446
  17. inbreed set NO
  18. inbreed set NO
  19. tmp: /tmp/fsx.16565
  20.  
  21. left pops:
  22. Tajikistan_C_Sarazm
  23. CHG_Kotias
  24. Iran_GanjDareh_N
  25. Tarim_EMBA1
  26. Turkey_N
  27.  
  28. right pops:
  29. Mbuti.DG
  30. Serbia_IronGates_Mesolithic
  31. CHG_Satsurblia
  32. EHG
  33. Sunghir
  34. China_YR_MN
  35. Turkey_Boncuklu_N
  36. Russia_Yana_UP.SG
  37. Russia_Shamanka_Eneolithic.SG
  38. ONG.SG
  39. WSHG
  40.  
  41. codimension 1
  42. f4info:
  43. f4rank: 3 dof: 7 chisq: 9.273 tail: 0.233678783 dofdiff: 9 chisqdiff: -9.273 taildiff: 1
  44. B:
  45. scale 1.000 1.000 1.000
  46. Serbia_IronGates_Mesolithic 0.377 1.263 0.152
  47. CHG_Satsurblia -0.329 -0.803 2.950
  48. EHG 1.562 0.170 -0.377
  49. Sunghir 0.355 0.619 0.233
  50. China_YR_MN 0.827 -0.197 -0.295
  51. Turkey_Boncuklu_N -0.348 2.617 0.334
  52. Russia_Yana_UP.SG 0.684 0.256 0.049
  53. Russia_Shamanka_Eneolithic.SG 1.043 -0.236 -0.261
  54. ONG.SG 0.578 -0.160 -0.193
  55. WSHG 2.119 -0.559 -0.877
  56. A:
  57. scale 69.536 158.906 178.606
  58. CHG_Kotias -0.068 0.014 1.927
  59. Iran_GanjDareh_N -0.662 -0.552 -0.529
  60. Tarim_EMBA1 1.860 0.215 -0.079
  61. Turkey_N -0.314 1.910 0.044
  62.  
  63.  
  64. full rank
  65. f4info:
  66. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 7 chisqdiff: 9.273 taildiff: 0.233678783
  67. B:
  68. scale 88.764 106.779 37.430 74.643
  69. Serbia_IronGates_Mesolithic 0.145 -0.920 0.441 1.025
  70. CHG_Satsurblia 2.855 -0.340 -0.427 -0.558
  71. EHG -0.473 -1.548 1.584 -0.369
  72. Sunghir 0.095 -0.810 0.350 0.380
  73. China_YR_MN -0.314 -0.685 0.835 -0.438
  74. Turkey_Boncuklu_N 0.360 -0.762 -0.228 2.466
  75. Russia_Yana_UP.SG 0.034 -0.774 0.712 0.027
  76. Russia_Shamanka_Eneolithic.SG -0.242 -0.822 1.078 -0.500
  77. ONG.SG -0.267 -0.564 0.562 -0.362
  78. WSHG -1.112 -1.829 2.063 -1.305
  79. A:
  80. scale 2.000 2.000 2.000 2.000
  81. CHG_Kotias 2.000 0.000 0.000 0.000
  82. Iran_GanjDareh_N 0.000 2.000 0.000 0.000
  83. Tarim_EMBA1 0.000 0.000 2.000 0.000
  84. Turkey_N 0.000 0.000 0.000 2.000
  85.  
  86.  
  87. best coefficients: 0.148 0.517 0.211 0.125
  88. totmean: 0.148 0.517 0.211 0.125
  89. boot mean: 0.148 0.517 0.211 0.125
  90. std. errors: 0.041 0.052 0.015 0.021
  91.  
  92. error covariance (* 1,000,000)
  93. 1674 -1793 182 -64
  94. -1793 2755 -496 -466
  95. 182 -496 222 91
  96. -64 -466 91 439
  97.  
  98.  
  99. summ: Tajikistan_C_Sarazm 4 0.233679 0.148 0.517 0.211 0.125 1674 -1793 182 -64 2755 ...
  100. -496 -466 222 91 439
  101.  
  102. fixed pat wt dof chisq tail prob
  103. 0000 0 7 9.273 0.233679 0.148 0.517 0.211 0.125
  104. 0001 1 8 41.180 1.92779e-06 0.166 0.652 0.182 0.000
  105. 0010 1 8 300.320 0 -2.024 2.810 0.000 0.213 infeasible
  106. 0100 1 8 97.972 1.10798e-17 0.539 0.000 0.277 0.183
  107. 1000 1 8 22.051 0.00482167 0.000 0.675 0.196 0.128
  108. 0011 2 9 159.111 1.1365e-29 -0.157 1.157 0.000 0.000 infeasible
  109. 0101 2 9 147.946 2.34802e-27 0.748 0.000 0.252 0.000
  110. 0110 2 9 331.498 0 1.089 0.000 0.000 -0.089 infeasible
  111. 1001 2 9 54.826 1.31475e-08 0.000 0.839 0.161 0.000
  112. 1010 2 9 164.964 0 0.000 1.008 0.000 -0.008 infeasible
  113. 1100 2 9 574.137 0 0.000 0.000 0.434 0.566
  114. 0111 3 10 335.719 0 1.000 0.000 0.000 0.000
  115. 1011 3 10 165.932 1.92726e-30 0.000 1.000 0.000 0.000
  116. 1101 3 10 2433.288 0 0.000 0.000 1.000 0.000
  117. 1110 3 10 1801.408 0 0.000 0.000 0.000 1.000
  118. best pat: 0000 0.233679 - -
  119. best pat: 1000 0.00482167 chi(nested): 12.779 p-value for nested model: 0.000350566
  120. best pat: 1001 1.31475e-08 chi(nested): 32.774 p-value for nested model: 1.03501e-08
  121. best pat: 1011 1.92726e-30 chi(nested): 111.106 p-value for nested model: 5.60865e-26
  122.  
  123. coeffs: 0.148 0.517 0.211 0.125
  124.  
  125. ## dscore:: f_4(Base, Fit, Rbase, right2)
  126. ## genstat:: f_4(Base, Fit, right1, right2)
  127.  
  128. details: CHG_Kotias Serbia_IronGates_Mesolithic 0.001639 1.098851
  129. details: Iran_GanjDareh_N Serbia_IronGates_Mesolithic -0.008614 -7.622205
  130. details: Tarim_EMBA1 Serbia_IronGates_Mesolithic 0.011779 9.541871
  131. details: Turkey_N Serbia_IronGates_Mesolithic 0.013730 12.711851
  132. dscore: Serbia_IronGates_Mesolithic f4: -0.000020 Z: -0.019983
  133.  
  134. details: CHG_Kotias CHG_Satsurblia 0.032162 13.637126
  135. details: Iran_GanjDareh_N CHG_Satsurblia -0.003184 -1.925663
  136. details: Tarim_EMBA1 CHG_Satsurblia -0.011418 -6.287214
  137. details: Turkey_N CHG_Satsurblia -0.007474 -4.825267
  138. dscore: CHG_Satsurblia f4: -0.000234 Z: -0.160395
  139.  
  140. details: CHG_Kotias EHG -0.005329 -2.956377
  141. details: Iran_GanjDareh_N EHG -0.014498 -10.524143
  142. details: Tarim_EMBA1 EHG 0.042305 26.880290
  143. details: Turkey_N EHG -0.004937 -3.746235
  144. dscore: EHG f4: 0.000010 Z: 0.008212
  145.  
  146. details: CHG_Kotias Sunghir 0.001066 0.669592
  147. details: Iran_GanjDareh_N Sunghir -0.007583 -6.000591
  148. details: Tarim_EMBA1 Sunghir 0.009347 6.596401
  149. details: Turkey_N Sunghir 0.005085 4.295512
  150. dscore: Sunghir f4: -0.001161 Z: -1.054859
  151.  
  152. details: CHG_Kotias China_YR_MN -0.003535 -2.215422
  153. details: Iran_GanjDareh_N China_YR_MN -0.006415 -5.242486
  154. details: Tarim_EMBA1 China_YR_MN 0.022309 15.515122
  155. details: Turkey_N China_YR_MN -0.005869 -4.958151
  156. dscore: China_YR_MN f4: 0.000127 Z: 0.115452
  157.  
  158. details: CHG_Kotias Turkey_Boncuklu_N 0.004057 2.642626
  159. details: Iran_GanjDareh_N Turkey_Boncuklu_N -0.007136 -6.087879
  160. details: Tarim_EMBA1 Turkey_Boncuklu_N -0.006081 -4.742021
  161. details: Turkey_N Turkey_Boncuklu_N 0.033037 27.489222
  162. dscore: Turkey_Boncuklu_N f4: -0.000253 Z: -0.243926
  163.  
  164. details: CHG_Kotias Russia_Yana_UP.SG 0.000389 0.227989
  165. details: Iran_GanjDareh_N Russia_Yana_UP.SG -0.007245 -5.591698
  166. details: Tarim_EMBA1 Russia_Yana_UP.SG 0.019027 13.636218
  167. details: Turkey_N Russia_Yana_UP.SG 0.000355 0.281129
  168. dscore: Russia_Yana_UP.SG f4: 0.000362 Z: 0.316648
  169.  
  170. details: CHG_Kotias Russia_Shamanka_Eneolithic.SG -0.002727 -1.838180
  171. details: Iran_GanjDareh_N Russia_Shamanka_Eneolithic.SG -0.007698 -6.650359
  172. details: Tarim_EMBA1 Russia_Shamanka_Eneolithic.SG 0.028806 21.667844
  173. details: Turkey_N Russia_Shamanka_Eneolithic.SG -0.006701 -6.080740
  174. dscore: Russia_Shamanka_Eneolithic.SG f4: 0.000848 Z: 0.821790
  175.  
  176. details: CHG_Kotias ONG.SG -0.003010 -1.962059
  177. details: Iran_GanjDareh_N ONG.SG -0.005285 -4.236234
  178. details: Tarim_EMBA1 ONG.SG 0.015023 10.787298
  179. details: Turkey_N ONG.SG -0.004848 -4.125468
  180. dscore: ONG.SG f4: -0.000618 Z: -0.557774
  181.  
  182. details: CHG_Kotias WSHG -0.012527 -6.929358
  183. details: Iran_GanjDareh_N WSHG -0.017125 -11.708210
  184. details: Tarim_EMBA1 WSHG 0.055129 33.347879
  185. details: Turkey_N WSHG -0.017487 -13.088646
  186. dscore: WSHG f4: -0.001276 Z: -0.987635
  187.  
  188. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -0.020
  189. gendstat: Mbuti.DG CHG_Satsurblia -0.160
  190. gendstat: Mbuti.DG EHG 0.008
  191. gendstat: Mbuti.DG Sunghir -1.055
  192. gendstat: Mbuti.DG China_YR_MN 0.115
  193. gendstat: Mbuti.DG Turkey_Boncuklu_N -0.244
  194. gendstat: Mbuti.DG Russia_Yana_UP.SG 0.317
  195. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG 0.822
  196. gendstat: Mbuti.DG ONG.SG -0.558
  197. gendstat: Mbuti.DG WSHG -0.988
  198. gendstat: Serbia_IronGates_Mesolithic CHG_Satsurblia -0.157
  199. gendstat: Serbia_IronGates_Mesolithic EHG 0.033
  200. gendstat: Serbia_IronGates_Mesolithic Sunghir -1.322
  201. gendstat: Serbia_IronGates_Mesolithic China_YR_MN 0.143
  202. gendstat: Serbia_IronGates_Mesolithic Turkey_Boncuklu_N -0.301
  203. gendstat: Serbia_IronGates_Mesolithic Russia_Yana_UP.SG 0.407
  204. gendstat: Serbia_IronGates_Mesolithic Russia_Shamanka_Eneolithic.SG 0.954
  205. gendstat: Serbia_IronGates_Mesolithic ONG.SG -0.562
  206. gendstat: Serbia_IronGates_Mesolithic WSHG -1.204
  207. gendstat: CHG_Satsurblia EHG 0.161
  208. gendstat: CHG_Satsurblia Sunghir -0.623
  209. gendstat: CHG_Satsurblia China_YR_MN 0.250
  210. gendstat: CHG_Satsurblia Turkey_Boncuklu_N -0.013
  211. gendstat: CHG_Satsurblia Russia_Yana_UP.SG 0.393
  212. gendstat: CHG_Satsurblia Russia_Shamanka_Eneolithic.SG 0.777
  213. gendstat: CHG_Satsurblia ONG.SG -0.258
  214. gendstat: CHG_Satsurblia WSHG -0.666
  215. gendstat: EHG Sunghir -1.061
  216. gendstat: EHG China_YR_MN 0.099
  217. gendstat: EHG Turkey_Boncuklu_N -0.239
  218. gendstat: EHG Russia_Yana_UP.SG 0.309
  219. gendstat: EHG Russia_Shamanka_Eneolithic.SG 0.763
  220. gendstat: EHG ONG.SG -0.515
  221. gendstat: EHG WSHG -1.244
  222. gendstat: Sunghir China_YR_MN 1.187
  223. gendstat: Sunghir Turkey_Boncuklu_N 0.940
  224. gendstat: Sunghir Russia_Yana_UP.SG 1.513
  225. gendstat: Sunghir Russia_Shamanka_Eneolithic.SG 2.008
  226. gendstat: Sunghir ONG.SG 0.500
  227. gendstat: Sunghir WSHG -0.095
  228. gendstat: China_YR_MN Turkey_Boncuklu_N -0.343
  229. gendstat: China_YR_MN Russia_Yana_UP.SG 0.221
  230. gendstat: China_YR_MN Russia_Shamanka_Eneolithic.SG 1.046
  231. gendstat: China_YR_MN ONG.SG -0.796
  232. gendstat: China_YR_MN WSHG -1.152
  233. gendstat: Turkey_Boncuklu_N Russia_Yana_UP.SG 0.573
  234. gendstat: Turkey_Boncuklu_N Russia_Shamanka_Eneolithic.SG 1.093
  235. gendstat: Turkey_Boncuklu_N ONG.SG -0.321
  236. gendstat: Turkey_Boncuklu_N WSHG -0.848
  237. gendstat: Russia_Yana_UP.SG Russia_Shamanka_Eneolithic.SG 0.497
  238. gendstat: Russia_Yana_UP.SG ONG.SG -0.914
  239. gendstat: Russia_Yana_UP.SG WSHG -1.434
  240. gendstat: Russia_Shamanka_Eneolithic.SG ONG.SG -1.726
  241. gendstat: Russia_Shamanka_Eneolithic.SG WSHG -1.908
  242. gendstat: ONG.SG WSHG -0.527
  243.  
  244. removing /tmp/fsx.16565
  245. ##end of qpAdm: 21.071 seconds cpu 0.561 Mbytes in use
  246.  
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