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- left pops:
- Nair
- ITU.SG
- Turkmenistan_IA.SG
- right pops:
- South_Africa_400BP.SG
- Cameroon_SMA.SG
- Mota
- South_Africa_HG
- ZlatyKun
- Eastern_Euro_UP.SG
- DevilsGate_N.SG
- Yana_UP
- Nepal_Samdzong_1500BP.SG
- Indian_GreatAndaman_100BP.SG
- Kazakhstan_Botai_Eneolithic.SG
- Barcin_N.SG
- Iran_N.SG
- Guanche.SG
- CHG.SG
- Italy_Mesolithic.SG
- Romania_IronGates_Mesolithic.SG
- Russia_BA_Okunevo.SG
- Russia_MLBA_Sintashta.SG
- Germany_EarlyMedieval.SG
- Poland_Southeast_CordedWare.SG
- Russia_Andronovo.SG
- Russia_Kalmykia_EBA_Yamnaya.SG
- Kazakhstan_Central_Steppe_EMBA.SG
- 0 Nair 7
- 1 ITU.SG 3
- 2 Turkmenistan_IA.SG 1
- 3 South_Africa_400BP.SG 4
- 4 Cameroon_SMA.SG 3
- 5 Mota 1
- 6 South_Africa_HG 4
- 7 ZlatyKun 1
- 8 Eastern_Euro_UP.SG 3
- 9 DevilsGate_N.SG 4
- 10 Yana_UP 2
- 11 Nepal_Samdzong_1500BP.SG 3
- 12 Indian_GreatAndaman_100BP.SG 1
- 13 Kazakhstan_Botai_Eneolithic.SG 3
- 14 Barcin_N.SG 3
- 15 Iran_N.SG 4
- 16 Guanche.SG 5
- 17 CHG.SG 2
- 18 Italy_Mesolithic.SG 3
- 19 Romania_IronGates_Mesolithic.SG 3
- 20 Russia_BA_Okunevo.SG 14
- 21 Russia_MLBA_Sintashta.SG 4
- 22 Germany_EarlyMedieval.SG 21
- 23 Poland_Southeast_CordedWare.SG 13
- 24 Russia_Andronovo.SG 3
- 25 Russia_Kalmykia_EBA_Yamnaya.SG 6
- 26 Kazakhstan_Central_Steppe_EMBA.SG 2
- jackknife block size: 0.050
- snps: 1150472 indivs: 123
- number of blocks for block jackknife: 714
- ## ncols: 1150472
- coverage: Nair 424902
- coverage: ITU.SG 1150156
- coverage: Turkmenistan_IA.SG 956939
- coverage: South_Africa_400BP.SG 1150180
- coverage: Cameroon_SMA.SG 1149654
- coverage: Mota 1134612
- coverage: South_Africa_HG 1135129
- coverage: ZlatyKun 1120502
- coverage: Eastern_Euro_UP.SG 1150149
- coverage: DevilsGate_N.SG 1134715
- coverage: Yana_UP 1135189
- coverage: Nepal_Samdzong_1500BP.SG 1149327
- coverage: Indian_GreatAndaman_100BP.SG 1133183
- coverage: Kazakhstan_Botai_Eneolithic.SG 1149869
- coverage: Barcin_N.SG 1150122
- coverage: Iran_N.SG 1149571
- coverage: Guanche.SG 1143329
- coverage: CHG.SG 1134595
- coverage: Italy_Mesolithic.SG 1141309
- coverage: Romania_IronGates_Mesolithic.SG 1136384
- coverage: Russia_BA_Okunevo.SG 1149711
- coverage: Russia_MLBA_Sintashta.SG 994111
- coverage: Germany_EarlyMedieval.SG 1148477
- coverage: Poland_Southeast_CordedWare.SG 1144291
- coverage: Russia_Andronovo.SG 1138684
- coverage: Russia_Kalmykia_EBA_Yamnaya.SG 1095090
- coverage: Kazakhstan_Central_Steppe_EMBA.SG 1149515
- Effective number of blocks: 639.579
- numsnps used: 360759
- codimension 1
- f4info:
- f4rank: 1 dof: 22 chisq: 11.063 tail: 0.973831557 dofdiff: 24 chisqdiff: -11.063 taildiff: 1
- B:
- scale 1.000
- Cameroon_SMA.SG 0.073
- Mota -0.067
- South_Africa_HG 0.020
- ZlatyKun 0.057
- Eastern_Euro_UP.SG 0.451
- DevilsGate_N.SG -0.777
- Yana_UP 0.247
- Nepal_Samdzong_1500BP.SG -0.856
- Indian_GreatAndaman_100BP.SG -1.204
- Kazakhstan_Botai_Eneolithic.SG 0.768
- Barcin_N.SG 1.475
- Iran_N.SG 0.684
- Guanche.SG 0.905
- CHG.SG 1.079
- Italy_Mesolithic.SG 1.262
- Romania_IronGates_Mesolithic.SG 1.480
- Russia_BA_Okunevo.SG 0.333
- Russia_MLBA_Sintashta.SG 1.587
- Germany_EarlyMedieval.SG 1.413
- Poland_Southeast_CordedWare.SG 1.388
- Russia_Andronovo.SG 1.471
- Russia_Kalmykia_EBA_Yamnaya.SG 1.409
- Kazakhstan_Central_Steppe_EMBA.SG 0.486
- A:
- scale 479.696
- ITU.SG -0.396
- Turkmenistan_IA.SG 1.358
- full rank
- f4info:
- f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 22 chisqdiff: 11.063 taildiff: 0.973831557
- B:
- scale 1185.348 346.873
- Cameroon_SMA.SG -0.085 0.081
- Mota -0.054 -0.091
- South_Africa_HG 0.043 0.047
- ZlatyKun -0.402 0.003
- Eastern_Euro_UP.SG -0.388 0.491
- DevilsGate_N.SG 0.558 -0.783
- Yana_UP -0.214 0.272
- Nepal_Samdzong_1500BP.SG 1.056 -0.762
- Indian_GreatAndaman_100BP.SG 1.430 -1.091
- Kazakhstan_Botai_Eneolithic.SG -0.688 0.785
- Barcin_N.SG -1.364 1.491
- Iran_N.SG -0.650 0.691
- Guanche.SG -1.005 0.890
- CHG.SG -1.376 1.038
- Italy_Mesolithic.SG -1.315 1.256
- Romania_IronGates_Mesolithic.SG -1.533 1.481
- Russia_BA_Okunevo.SG -0.273 0.372
- Russia_MLBA_Sintashta.SG -1.407 1.610
- Germany_EarlyMedieval.SG -1.338 1.441
- Poland_Southeast_CordedWare.SG -1.378 1.399
- Russia_Andronovo.SG -1.524 1.440
- Russia_Kalmykia_EBA_Yamnaya.SG -1.103 1.482
- Kazakhstan_Central_Steppe_EMBA.SG -0.372 0.542
- A:
- scale 1.414 1.414
- ITU.SG 1.414 0.000
- Turkmenistan_IA.SG 0.000 1.414
- best coefficients: 0.774 0.226
- Jackknife mean: 0.774087726 0.225912274
- std. errors: 0.018 0.018
- error covariance (* 1,000,000)
- 340 -340
- -340 340
- summ: Nair 2 0.973832 0.774 0.226 340 -340 340
- fixed pat wt dof chisq tail prob
- 00 0 22 11.063 0.973832 0.774 0.226
- 01 1 23 132.578 2.15875e-17 1.000 0.000
- 10 1 23 677.553 0 0.000 1.000
- best pat: 00 0.973832 - -
- best pat: 01 2.15875e-17 chi(nested): 121.514 p-value for nested model: 2.94876e-28
- coeffs: 0.774 0.226
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: ITU.SG Cameroon_SMA.SG -0.000072 -0.394954
- details: Turkmenistan_IA.SG Cameroon_SMA.SG 0.000233 0.913087
- dscore: Cameroon_SMA.SG f4: -0.000003 Z: -0.020573
- details: ITU.SG Mota -0.000046 -0.198487
- details: Turkmenistan_IA.SG Mota -0.000261 -0.718006
- dscore: Mota f4: -0.000094 Z: -0.452736
- details: ITU.SG South_Africa_HG 0.000036 0.201392
- details: Turkmenistan_IA.SG South_Africa_HG 0.000136 0.539830
- dscore: South_Africa_HG f4: 0.000058 Z: 0.366542
- details: ITU.SG ZlatyKun -0.000339 -1.099370
- details: Turkmenistan_IA.SG ZlatyKun 0.000009 0.020369
- dscore: ZlatyKun f4: -0.000261 Z: -0.943123
- details: ITU.SG Eastern_Euro_UP.SG -0.000327 -1.214089
- details: Turkmenistan_IA.SG Eastern_Euro_UP.SG 0.001415 3.614757
- dscore: Eastern_Euro_UP.SG f4: 0.000066 Z: 0.275565
- details: ITU.SG DevilsGate_N.SG 0.000471 1.696341
- details: Turkmenistan_IA.SG DevilsGate_N.SG -0.002256 -5.707521
- dscore: DevilsGate_N.SG f4: -0.000144 Z: -0.586750
- details: ITU.SG Yana_UP -0.000181 -0.677650
- details: Turkmenistan_IA.SG Yana_UP 0.000784 1.969940
- dscore: Yana_UP f4: 0.000037 Z: 0.156646
- details: ITU.SG Nepal_Samdzong_1500BP.SG 0.000891 3.475985
- details: Turkmenistan_IA.SG Nepal_Samdzong_1500BP.SG -0.002198 -5.741920
- dscore: Nepal_Samdzong_1500BP.SG f4: 0.000194 Z: 0.837482
- details: ITU.SG Indian_GreatAndaman_100BP.SG 0.001207 4.028389
- details: Turkmenistan_IA.SG Indian_GreatAndaman_100BP.SG -0.003146 -7.441269
- dscore: Indian_GreatAndaman_100BP.SG f4: 0.000225 Z: 0.841999
- details: ITU.SG Kazakhstan_Botai_Eneolithic.SG -0.000580 -2.308662
- details: Turkmenistan_IA.SG Kazakhstan_Botai_Eneolithic.SG 0.002264 5.649365
- dscore: Kazakhstan_Botai_Eneolithic.SG f4: 0.000061 Z: 0.265619
- details: ITU.SG Barcin_N.SG -0.001151 -4.721900
- details: Turkmenistan_IA.SG Barcin_N.SG 0.004298 11.698431
- dscore: Barcin_N.SG f4: 0.000079 Z: 0.362406
- details: ITU.SG Iran_N.SG -0.000549 -2.274215
- details: Turkmenistan_IA.SG Iran_N.SG 0.001992 5.675038
- dscore: Iran_N.SG f4: 0.000024 Z: 0.112676
- details: ITU.SG Guanche.SG -0.000848 -3.613005
- details: Turkmenistan_IA.SG Guanche.SG 0.002566 6.966229
- dscore: Guanche.SG f4: -0.000078 Z: -0.370690
- details: ITU.SG CHG.SG -0.001161 -4.073160
- details: Turkmenistan_IA.SG CHG.SG 0.002993 7.426461
- dscore: CHG.SG f4: -0.000224 Z: -0.881633
- details: ITU.SG Italy_Mesolithic.SG -0.001110 -3.976955
- details: Turkmenistan_IA.SG Italy_Mesolithic.SG 0.003620 8.092878
- dscore: Italy_Mesolithic.SG f4: -0.000043 Z: -0.168499
- details: ITU.SG Romania_IronGates_Mesolithic.SG -0.001294 -4.760069
- details: Turkmenistan_IA.SG Romania_IronGates_Mesolithic.SG 0.004269 10.325959
- dscore: Romania_IronGates_Mesolithic.SG f4: -0.000039 Z: -0.159049
- details: ITU.SG Russia_BA_Okunevo.SG -0.000230 -0.991264
- details: Turkmenistan_IA.SG Russia_BA_Okunevo.SG 0.001074 3.091372
- dscore: Russia_BA_Okunevo.SG f4: 0.000064 Z: 0.305365
- details: ITU.SG Russia_MLBA_Sintashta.SG -0.001187 -4.582325
- details: Turkmenistan_IA.SG Russia_MLBA_Sintashta.SG 0.004641 12.159892
- dscore: Russia_MLBA_Sintashta.SG f4: 0.000128 Z: 0.553236
- details: ITU.SG Germany_EarlyMedieval.SG -0.001129 -5.027223
- details: Turkmenistan_IA.SG Germany_EarlyMedieval.SG 0.004156 12.208162
- dscore: Germany_EarlyMedieval.SG f4: 0.000063 Z: 0.316137
- details: ITU.SG Poland_Southeast_CordedWare.SG -0.001162 -4.917119
- details: Turkmenistan_IA.SG Poland_Southeast_CordedWare.SG 0.004033 11.562379
- dscore: Poland_Southeast_CordedWare.SG f4: 0.000010 Z: 0.045916
- details: ITU.SG Russia_Andronovo.SG -0.001285 -5.105006
- details: Turkmenistan_IA.SG Russia_Andronovo.SG 0.004151 10.456056
- dscore: Russia_Andronovo.SG f4: -0.000059 Z: -0.257001
- details: ITU.SG Russia_Kalmykia_EBA_Yamnaya.SG -0.000930 -3.815814
- details: Turkmenistan_IA.SG Russia_Kalmykia_EBA_Yamnaya.SG 0.004272 11.648761
- dscore: Russia_Kalmykia_EBA_Yamnaya.SG f4: 0.000243 Z: 1.114429
- details: ITU.SG Kazakhstan_Central_Steppe_EMBA.SG -0.000314 -1.140876
- details: Turkmenistan_IA.SG Kazakhstan_Central_Steppe_EMBA.SG 0.001562 3.974840
- dscore: Kazakhstan_Central_Steppe_EMBA.SG f4: 0.000109 Z: 0.446861
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