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Aug 25th, 2022
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  1.  
  2. left pops:
  3. Nair
  4. ITU.SG
  5. Turkmenistan_IA.SG
  6.  
  7. right pops:
  8. South_Africa_400BP.SG
  9. Cameroon_SMA.SG
  10. Mota
  11. South_Africa_HG
  12. ZlatyKun
  13. Eastern_Euro_UP.SG
  14. DevilsGate_N.SG
  15. Yana_UP
  16. Nepal_Samdzong_1500BP.SG
  17. Indian_GreatAndaman_100BP.SG
  18. Kazakhstan_Botai_Eneolithic.SG
  19. Barcin_N.SG
  20. Iran_N.SG
  21. Guanche.SG
  22. CHG.SG
  23. Italy_Mesolithic.SG
  24. Romania_IronGates_Mesolithic.SG
  25. Russia_BA_Okunevo.SG
  26. Russia_MLBA_Sintashta.SG
  27. Germany_EarlyMedieval.SG
  28. Poland_Southeast_CordedWare.SG
  29. Russia_Andronovo.SG
  30. Russia_Kalmykia_EBA_Yamnaya.SG
  31. Kazakhstan_Central_Steppe_EMBA.SG
  32.  
  33. 0 Nair 7
  34. 1 ITU.SG 3
  35. 2 Turkmenistan_IA.SG 1
  36. 3 South_Africa_400BP.SG 4
  37. 4 Cameroon_SMA.SG 3
  38. 5 Mota 1
  39. 6 South_Africa_HG 4
  40. 7 ZlatyKun 1
  41. 8 Eastern_Euro_UP.SG 3
  42. 9 DevilsGate_N.SG 4
  43. 10 Yana_UP 2
  44. 11 Nepal_Samdzong_1500BP.SG 3
  45. 12 Indian_GreatAndaman_100BP.SG 1
  46. 13 Kazakhstan_Botai_Eneolithic.SG 3
  47. 14 Barcin_N.SG 3
  48. 15 Iran_N.SG 4
  49. 16 Guanche.SG 5
  50. 17 CHG.SG 2
  51. 18 Italy_Mesolithic.SG 3
  52. 19 Romania_IronGates_Mesolithic.SG 3
  53. 20 Russia_BA_Okunevo.SG 14
  54. 21 Russia_MLBA_Sintashta.SG 4
  55. 22 Germany_EarlyMedieval.SG 21
  56. 23 Poland_Southeast_CordedWare.SG 13
  57. 24 Russia_Andronovo.SG 3
  58. 25 Russia_Kalmykia_EBA_Yamnaya.SG 6
  59. 26 Kazakhstan_Central_Steppe_EMBA.SG 2
  60. jackknife block size: 0.050
  61. snps: 1150472 indivs: 123
  62. number of blocks for block jackknife: 714
  63. ## ncols: 1150472
  64. coverage: Nair 424902
  65. coverage: ITU.SG 1150156
  66. coverage: Turkmenistan_IA.SG 956939
  67. coverage: South_Africa_400BP.SG 1150180
  68. coverage: Cameroon_SMA.SG 1149654
  69. coverage: Mota 1134612
  70. coverage: South_Africa_HG 1135129
  71. coverage: ZlatyKun 1120502
  72. coverage: Eastern_Euro_UP.SG 1150149
  73. coverage: DevilsGate_N.SG 1134715
  74. coverage: Yana_UP 1135189
  75. coverage: Nepal_Samdzong_1500BP.SG 1149327
  76. coverage: Indian_GreatAndaman_100BP.SG 1133183
  77. coverage: Kazakhstan_Botai_Eneolithic.SG 1149869
  78. coverage: Barcin_N.SG 1150122
  79. coverage: Iran_N.SG 1149571
  80. coverage: Guanche.SG 1143329
  81. coverage: CHG.SG 1134595
  82. coverage: Italy_Mesolithic.SG 1141309
  83. coverage: Romania_IronGates_Mesolithic.SG 1136384
  84. coverage: Russia_BA_Okunevo.SG 1149711
  85. coverage: Russia_MLBA_Sintashta.SG 994111
  86. coverage: Germany_EarlyMedieval.SG 1148477
  87. coverage: Poland_Southeast_CordedWare.SG 1144291
  88. coverage: Russia_Andronovo.SG 1138684
  89. coverage: Russia_Kalmykia_EBA_Yamnaya.SG 1095090
  90. coverage: Kazakhstan_Central_Steppe_EMBA.SG 1149515
  91. Effective number of blocks: 639.579
  92. numsnps used: 360759
  93. codimension 1
  94. f4info:
  95. f4rank: 1 dof: 22 chisq: 11.063 tail: 0.973831557 dofdiff: 24 chisqdiff: -11.063 taildiff: 1
  96. B:
  97. scale 1.000
  98. Cameroon_SMA.SG 0.073
  99. Mota -0.067
  100. South_Africa_HG 0.020
  101. ZlatyKun 0.057
  102. Eastern_Euro_UP.SG 0.451
  103. DevilsGate_N.SG -0.777
  104. Yana_UP 0.247
  105. Nepal_Samdzong_1500BP.SG -0.856
  106. Indian_GreatAndaman_100BP.SG -1.204
  107. Kazakhstan_Botai_Eneolithic.SG 0.768
  108. Barcin_N.SG 1.475
  109. Iran_N.SG 0.684
  110. Guanche.SG 0.905
  111. CHG.SG 1.079
  112. Italy_Mesolithic.SG 1.262
  113. Romania_IronGates_Mesolithic.SG 1.480
  114. Russia_BA_Okunevo.SG 0.333
  115. Russia_MLBA_Sintashta.SG 1.587
  116. Germany_EarlyMedieval.SG 1.413
  117. Poland_Southeast_CordedWare.SG 1.388
  118. Russia_Andronovo.SG 1.471
  119. Russia_Kalmykia_EBA_Yamnaya.SG 1.409
  120. Kazakhstan_Central_Steppe_EMBA.SG 0.486
  121. A:
  122. scale 479.696
  123. ITU.SG -0.396
  124. Turkmenistan_IA.SG 1.358
  125.  
  126.  
  127. full rank
  128. f4info:
  129. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 22 chisqdiff: 11.063 taildiff: 0.973831557
  130. B:
  131. scale 1185.348 346.873
  132. Cameroon_SMA.SG -0.085 0.081
  133. Mota -0.054 -0.091
  134. South_Africa_HG 0.043 0.047
  135. ZlatyKun -0.402 0.003
  136. Eastern_Euro_UP.SG -0.388 0.491
  137. DevilsGate_N.SG 0.558 -0.783
  138. Yana_UP -0.214 0.272
  139. Nepal_Samdzong_1500BP.SG 1.056 -0.762
  140. Indian_GreatAndaman_100BP.SG 1.430 -1.091
  141. Kazakhstan_Botai_Eneolithic.SG -0.688 0.785
  142. Barcin_N.SG -1.364 1.491
  143. Iran_N.SG -0.650 0.691
  144. Guanche.SG -1.005 0.890
  145. CHG.SG -1.376 1.038
  146. Italy_Mesolithic.SG -1.315 1.256
  147. Romania_IronGates_Mesolithic.SG -1.533 1.481
  148. Russia_BA_Okunevo.SG -0.273 0.372
  149. Russia_MLBA_Sintashta.SG -1.407 1.610
  150. Germany_EarlyMedieval.SG -1.338 1.441
  151. Poland_Southeast_CordedWare.SG -1.378 1.399
  152. Russia_Andronovo.SG -1.524 1.440
  153. Russia_Kalmykia_EBA_Yamnaya.SG -1.103 1.482
  154. Kazakhstan_Central_Steppe_EMBA.SG -0.372 0.542
  155. A:
  156. scale 1.414 1.414
  157. ITU.SG 1.414 0.000
  158. Turkmenistan_IA.SG 0.000 1.414
  159.  
  160.  
  161. best coefficients: 0.774 0.226
  162. Jackknife mean: 0.774087726 0.225912274
  163. std. errors: 0.018 0.018
  164.  
  165. error covariance (* 1,000,000)
  166. 340 -340
  167. -340 340
  168.  
  169.  
  170. summ: Nair 2 0.973832 0.774 0.226 340 -340 340
  171.  
  172. fixed pat wt dof chisq tail prob
  173. 00 0 22 11.063 0.973832 0.774 0.226
  174. 01 1 23 132.578 2.15875e-17 1.000 0.000
  175. 10 1 23 677.553 0 0.000 1.000
  176. best pat: 00 0.973832 - -
  177. best pat: 01 2.15875e-17 chi(nested): 121.514 p-value for nested model: 2.94876e-28
  178.  
  179. coeffs: 0.774 0.226
  180.  
  181. ## dscore:: f_4(Base, Fit, Rbase, right2)
  182. ## genstat:: f_4(Base, Fit, right1, right2)
  183.  
  184. details: ITU.SG Cameroon_SMA.SG -0.000072 -0.394954
  185. details: Turkmenistan_IA.SG Cameroon_SMA.SG 0.000233 0.913087
  186. dscore: Cameroon_SMA.SG f4: -0.000003 Z: -0.020573
  187.  
  188. details: ITU.SG Mota -0.000046 -0.198487
  189. details: Turkmenistan_IA.SG Mota -0.000261 -0.718006
  190. dscore: Mota f4: -0.000094 Z: -0.452736
  191.  
  192. details: ITU.SG South_Africa_HG 0.000036 0.201392
  193. details: Turkmenistan_IA.SG South_Africa_HG 0.000136 0.539830
  194. dscore: South_Africa_HG f4: 0.000058 Z: 0.366542
  195.  
  196. details: ITU.SG ZlatyKun -0.000339 -1.099370
  197. details: Turkmenistan_IA.SG ZlatyKun 0.000009 0.020369
  198. dscore: ZlatyKun f4: -0.000261 Z: -0.943123
  199.  
  200. details: ITU.SG Eastern_Euro_UP.SG -0.000327 -1.214089
  201. details: Turkmenistan_IA.SG Eastern_Euro_UP.SG 0.001415 3.614757
  202. dscore: Eastern_Euro_UP.SG f4: 0.000066 Z: 0.275565
  203.  
  204. details: ITU.SG DevilsGate_N.SG 0.000471 1.696341
  205. details: Turkmenistan_IA.SG DevilsGate_N.SG -0.002256 -5.707521
  206. dscore: DevilsGate_N.SG f4: -0.000144 Z: -0.586750
  207.  
  208. details: ITU.SG Yana_UP -0.000181 -0.677650
  209. details: Turkmenistan_IA.SG Yana_UP 0.000784 1.969940
  210. dscore: Yana_UP f4: 0.000037 Z: 0.156646
  211.  
  212. details: ITU.SG Nepal_Samdzong_1500BP.SG 0.000891 3.475985
  213. details: Turkmenistan_IA.SG Nepal_Samdzong_1500BP.SG -0.002198 -5.741920
  214. dscore: Nepal_Samdzong_1500BP.SG f4: 0.000194 Z: 0.837482
  215.  
  216. details: ITU.SG Indian_GreatAndaman_100BP.SG 0.001207 4.028389
  217. details: Turkmenistan_IA.SG Indian_GreatAndaman_100BP.SG -0.003146 -7.441269
  218. dscore: Indian_GreatAndaman_100BP.SG f4: 0.000225 Z: 0.841999
  219.  
  220. details: ITU.SG Kazakhstan_Botai_Eneolithic.SG -0.000580 -2.308662
  221. details: Turkmenistan_IA.SG Kazakhstan_Botai_Eneolithic.SG 0.002264 5.649365
  222. dscore: Kazakhstan_Botai_Eneolithic.SG f4: 0.000061 Z: 0.265619
  223.  
  224. details: ITU.SG Barcin_N.SG -0.001151 -4.721900
  225. details: Turkmenistan_IA.SG Barcin_N.SG 0.004298 11.698431
  226. dscore: Barcin_N.SG f4: 0.000079 Z: 0.362406
  227.  
  228. details: ITU.SG Iran_N.SG -0.000549 -2.274215
  229. details: Turkmenistan_IA.SG Iran_N.SG 0.001992 5.675038
  230. dscore: Iran_N.SG f4: 0.000024 Z: 0.112676
  231.  
  232. details: ITU.SG Guanche.SG -0.000848 -3.613005
  233. details: Turkmenistan_IA.SG Guanche.SG 0.002566 6.966229
  234. dscore: Guanche.SG f4: -0.000078 Z: -0.370690
  235.  
  236. details: ITU.SG CHG.SG -0.001161 -4.073160
  237. details: Turkmenistan_IA.SG CHG.SG 0.002993 7.426461
  238. dscore: CHG.SG f4: -0.000224 Z: -0.881633
  239.  
  240. details: ITU.SG Italy_Mesolithic.SG -0.001110 -3.976955
  241. details: Turkmenistan_IA.SG Italy_Mesolithic.SG 0.003620 8.092878
  242. dscore: Italy_Mesolithic.SG f4: -0.000043 Z: -0.168499
  243.  
  244. details: ITU.SG Romania_IronGates_Mesolithic.SG -0.001294 -4.760069
  245. details: Turkmenistan_IA.SG Romania_IronGates_Mesolithic.SG 0.004269 10.325959
  246. dscore: Romania_IronGates_Mesolithic.SG f4: -0.000039 Z: -0.159049
  247.  
  248. details: ITU.SG Russia_BA_Okunevo.SG -0.000230 -0.991264
  249. details: Turkmenistan_IA.SG Russia_BA_Okunevo.SG 0.001074 3.091372
  250. dscore: Russia_BA_Okunevo.SG f4: 0.000064 Z: 0.305365
  251.  
  252. details: ITU.SG Russia_MLBA_Sintashta.SG -0.001187 -4.582325
  253. details: Turkmenistan_IA.SG Russia_MLBA_Sintashta.SG 0.004641 12.159892
  254. dscore: Russia_MLBA_Sintashta.SG f4: 0.000128 Z: 0.553236
  255.  
  256. details: ITU.SG Germany_EarlyMedieval.SG -0.001129 -5.027223
  257. details: Turkmenistan_IA.SG Germany_EarlyMedieval.SG 0.004156 12.208162
  258. dscore: Germany_EarlyMedieval.SG f4: 0.000063 Z: 0.316137
  259.  
  260. details: ITU.SG Poland_Southeast_CordedWare.SG -0.001162 -4.917119
  261. details: Turkmenistan_IA.SG Poland_Southeast_CordedWare.SG 0.004033 11.562379
  262. dscore: Poland_Southeast_CordedWare.SG f4: 0.000010 Z: 0.045916
  263.  
  264. details: ITU.SG Russia_Andronovo.SG -0.001285 -5.105006
  265. details: Turkmenistan_IA.SG Russia_Andronovo.SG 0.004151 10.456056
  266. dscore: Russia_Andronovo.SG f4: -0.000059 Z: -0.257001
  267.  
  268. details: ITU.SG Russia_Kalmykia_EBA_Yamnaya.SG -0.000930 -3.815814
  269. details: Turkmenistan_IA.SG Russia_Kalmykia_EBA_Yamnaya.SG 0.004272 11.648761
  270. dscore: Russia_Kalmykia_EBA_Yamnaya.SG f4: 0.000243 Z: 1.114429
  271.  
  272. details: ITU.SG Kazakhstan_Central_Steppe_EMBA.SG -0.000314 -1.140876
  273. details: Turkmenistan_IA.SG Kazakhstan_Central_Steppe_EMBA.SG 0.001562 3.974840
  274. dscore: Kazakhstan_Central_Steppe_EMBA.SG f4: 0.000109 Z: 0.446861
  275.  
  276.  
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