API tools faq
paste
misnomer001

steppe_en=ehg+chg+wshg+caucasus_en

misnomer001
Aug 7th, 2023
169
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 9.40 KB | None | 0 0
raw download clone embed print report
  1. qpAdm: parameter file: parqpAdm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. S1: ste4
  5. indivname: ste4.ind
  6. snpname: ste4.snp
  7. genotypename: ste4.geno
  8. popleft: left
  9. popright: right
  10. details: YES
  11. allsnps: YES
  12. inbreed: NO
  13. ## qpAdm version: 1520
  14. seed: 1629075406
  15. inbreed set NO
  16. inbreed set NO
  17. tmp: /tmp/fsx.2839
  18.  
  19. left pops:
  20. Russia_Steppe_Eneolithic
  21. EHG
  22. CHG
  23. WSHG
  24. Russia_Caucasus_Eneolithic
  25.  
  26. right pops:
  27. Mbuti.DG
  28. Morocco_Iberomaurusian
  29. GEO_Dzudzuana_UP
  30. Russia_MA1_HG.SG
  31. Italy_North_Villabruna_HG
  32. ONG.SG
  33. Turkey_Epipaleolithic
  34. Iran_GanjDareh_N
  35.  
  36. codimension 1
  37. f4info:
  38. f4rank: 3 dof: 4 chisq: 19.688 tail: 0.00057551509 dofdiff: 6 chisqdiff: -19.688 taildiff: 1
  39. B:
  40. scale 1.000 1.000 1.000
  41. Morocco_Iberomaurusian 0.065 0.277 -0.911
  42. GEO_Dzudzuana_UP -0.159 0.719 0.122
  43. Russia_MA1_HG.SG 2.286 -0.874 -0.353
  44. Italy_North_Villabruna_HG 1.064 2.031 0.116
  45. ONG.SG 0.578 -0.420 0.235
  46. Turkey_Epipaleolithic -0.185 1.145 -0.950
  47. Iran_GanjDareh_N -0.495 -0.166 2.249
  48. A:
  49. scale 101.477 284.567 599.067
  50. EHG 0.930 1.041 -0.917
  51. CHG -0.979 -0.773 -0.286
  52. WSHG 1.047 -1.515 -0.809
  53. Russia_Caucasus_Eneolithic -1.040 0.155 -1.557
  54.  
  55.  
  56. full rank
  57. f4info:
  58. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 4 chisqdiff: 19.688 taildiff: 0.00057551509
  59. B:
  60. scale 102.137 90.401 84.586 98.960
  61. Morocco_Iberomaurusian 0.181 -0.267 -0.031 0.243
  62. GEO_Dzudzuana_UP 0.005 -0.158 -0.519 0.179
  63. Russia_MA1_HG.SG 1.674 -2.088 2.329 -2.282
  64. Italy_North_Villabruna_HG 1.722 -1.484 -0.030 -0.985
  65. ONG.SG 0.372 -0.393 0.643 -0.664
  66. Turkey_Epipaleolithic 0.198 -0.395 -0.668 0.538
  67. Iran_GanjDareh_N -1.011 0.176 -0.668 -0.047
  68. A:
  69. scale 2.000 2.000 2.000 2.000
  70. EHG 2.000 0.000 0.000 0.000
  71. CHG 0.000 2.000 0.000 0.000
  72. WSHG 0.000 0.000 2.000 0.000
  73. Russia_Caucasus_Eneolithic 0.000 0.000 0.000 2.000
  74.  
  75.  
  76. best coefficients: 0.625 0.981 -0.120 -0.486
  77. totmean: 0.625 0.981 -0.120 -0.486
  78. boot mean: 0.947 1.588 -0.399 -1.136
  79. std. errors: 13.644 27.958 12.060 29.525
  80.  
  81. error covariance (* 1,000,000)
  82. 186147455 379679718 -164371157 -401456015
  83. 379679718 781672851 -336064321 -825288248
  84. -164371157 -336064321 145431766 355003712
  85. -401456015 -825288248 355003712 871740552
  86.  
  87.  
  88. summ: Russia_Steppe_Eneolithic 4 0.000576 0.947 1.588 -0.399 -1.136 186147455 379679718 -164371157 -401456015 781672851 ...
  89. -336064321 -825288248 145431766 355003712 871740552
  90.  
  91. fixed pat wt dof chisq tail prob
  92. 0000 0 4 19.688 0.000575515 0.625 0.981 -0.120 -0.486 infeasible
  93. 0001 1 5 23.350 0.000289293 0.383 0.533 0.084 0.000
  94. 0010 1 5 20.406 0.00104822 0.486 0.759 0.000 -0.245 infeasible
  95. 0100 1 5 37.603 4.5332e-07 0.110 0.000 0.337 0.554
  96. 1000 1 5 35.995 9.51802e-07 0.000 -0.265 0.436 0.829 infeasible
  97. 0011 2 6 26.018 0.000220951 0.463 0.537 0.000 0.000
  98. 0101 2 6 240.679 0 9.304 0.000 -8.304 0.000 infeasible
  99. 0110 2 6 71.786 1.75843e-13 0.450 0.000 0.000 0.550
  100. 1001 2 6 71.461 2.05058e-13 0.000 0.598 0.402 0.000
  101. 1010 2 6 60.843 3.03415e-11 0.000 -47.650 0.000 48.650 infeasible
  102. 1100 2 6 39.327 6.17388e-07 0.000 0.000 0.426 0.574
  103. 0111 3 7 456.305 0 1.000 0.000 0.000 0.000
  104. 1011 3 7 274.775 0 0.000 1.000 0.000 0.000
  105. 1101 3 7 548.416 0 0.000 0.000 1.000 0.000
  106. 1110 3 7 245.703 0 0.000 0.000 0.000 1.000
  107. best pat: 0000 0.000575515 - -
  108. best pat: 0100 4.5332e-07 chi(nested): 17.915 p-value for nested model: 2.30939e-05
  109. best pat: 1100 6.17388e-07 chi(nested): 1.724 p-value for nested model: 0.18914
  110. best pat: 1110 2.27539e-49 chi(nested): 206.375 p-value for nested model: 8.48601e-47
  111.  
  112. coeffs: 0.625 0.981 -0.120 -0.486
  113.  
  114. ## dscore:: f_4(Base, Fit, Rbase, right2)
  115. ## genstat:: f_4(Base, Fit, right1, right2)
  116.  
  117. details: EHG Morocco_Iberomaurusian 0.001774 1.820203
  118. details: CHG Morocco_Iberomaurusian -0.002950 -2.653585
  119. details: WSHG Morocco_Iberomaurusian -0.000362 -0.330596
  120. details: Russia_Caucasus_Eneolithic Morocco_Iberomaurusian 0.002452 1.818509
  121. dscore: Morocco_Iberomaurusian f4: -0.002933 Z: -2.303320
  122.  
  123. details: EHG GEO_Dzudzuana_UP 0.000049 0.028457
  124. details: CHG GEO_Dzudzuana_UP -0.001744 -0.881768
  125. details: WSHG GEO_Dzudzuana_UP -0.006135 -3.226181
  126. details: Russia_Caucasus_Eneolithic GEO_Dzudzuana_UP 0.001808 0.767135
  127. dscore: GEO_Dzudzuana_UP f4: -0.001821 Z: -0.801850
  128.  
  129. details: EHG Russia_MA1_HG.SG 0.016385 10.460816
  130. details: CHG Russia_MA1_HG.SG -0.023095 -13.138141
  131. details: WSHG Russia_MA1_HG.SG 0.027528 15.581717
  132. details: Russia_Caucasus_Eneolithic Russia_MA1_HG.SG -0.023059 -11.794762
  133. dscore: Russia_MA1_HG.SG f4: -0.004525 Z: -2.373571
  134.  
  135. details: EHG Italy_North_Villabruna_HG 0.016864 11.181092
  136. details: CHG Italy_North_Villabruna_HG -0.016421 -9.543024
  137. details: WSHG Italy_North_Villabruna_HG -0.000357 -0.215783
  138. details: Russia_Caucasus_Eneolithic Italy_North_Villabruna_HG -0.009950 -5.184963
  139. dscore: Italy_North_Villabruna_HG f4: -0.000690 Z: -0.354112
  140.  
  141. details: EHG ONG.SG 0.003641 3.383560
  142. details: CHG ONG.SG -0.004349 -3.680157
  143. details: WSHG ONG.SG 0.007606 6.324475
  144. details: Russia_Caucasus_Eneolithic ONG.SG -0.006710 -4.788521
  145. dscore: ONG.SG f4: 0.000354 Z: 0.260659
  146.  
  147. details: EHG Turkey_Epipaleolithic 0.001939 1.416668
  148. details: CHG Turkey_Epipaleolithic -0.004370 -2.767511
  149. details: WSHG Turkey_Epipaleolithic -0.007898 -5.290832
  150. details: Russia_Caucasus_Eneolithic Turkey_Epipaleolithic 0.005437 2.842239
  151. dscore: Turkey_Epipaleolithic f4: -0.004767 Z: -2.630330
  152.  
  153. details: EHG Iran_GanjDareh_N -0.009899 -9.835270
  154. details: CHG Iran_GanjDareh_N 0.001943 1.717686
  155. details: WSHG Iran_GanjDareh_N -0.007901 -6.995858
  156. details: Russia_Caucasus_Eneolithic Iran_GanjDareh_N -0.000478 -0.367297
  157. dscore: Iran_GanjDareh_N f4: -0.003099 Z: -2.359299
  158.  
  159. gendstat: Mbuti.DG Morocco_Iberomaurusian -2.303
  160. gendstat: Mbuti.DG GEO_Dzudzuana_UP -0.802
  161. gendstat: Mbuti.DG Russia_MA1_HG.SG -2.374
  162. gendstat: Mbuti.DG Italy_North_Villabruna_HG -0.354
  163. gendstat: Mbuti.DG ONG.SG 0.261
  164. gendstat: Mbuti.DG Turkey_Epipaleolithic -2.630
  165. gendstat: Mbuti.DG Iran_GanjDareh_N -2.359
  166. gendstat: Morocco_Iberomaurusian GEO_Dzudzuana_UP 0.490
  167. gendstat: Morocco_Iberomaurusian Russia_MA1_HG.SG -0.784
  168. gendstat: Morocco_Iberomaurusian Italy_North_Villabruna_HG 1.131
  169. gendstat: Morocco_Iberomaurusian ONG.SG 2.115
  170. gendstat: Morocco_Iberomaurusian Turkey_Epipaleolithic -1.008
  171. gendstat: Morocco_Iberomaurusian Iran_GanjDareh_N -0.112
  172. gendstat: GEO_Dzudzuana_UP Russia_MA1_HG.SG -1.043
  173. gendstat: GEO_Dzudzuana_UP Italy_North_Villabruna_HG 0.452
  174. gendstat: GEO_Dzudzuana_UP ONG.SG 0.958
  175. gendstat: GEO_Dzudzuana_UP Turkey_Epipaleolithic -1.210
  176. gendstat: GEO_Dzudzuana_UP Iran_GanjDareh_N -0.584
  177. gendstat: Russia_MA1_HG.SG Italy_North_Villabruna_HG 1.692
  178. gendstat: Russia_MA1_HG.SG ONG.SG 2.534
  179. gendstat: Russia_MA1_HG.SG Turkey_Epipaleolithic -0.103
  180. gendstat: Russia_MA1_HG.SG Iran_GanjDareh_N 0.749
  181. gendstat: Italy_North_Villabruna_HG ONG.SG 0.533
  182. gendstat: Italy_North_Villabruna_HG Turkey_Epipaleolithic -1.885
  183. gendstat: Italy_North_Villabruna_HG Iran_GanjDareh_N -1.234
  184. gendstat: ONG.SG Turkey_Epipaleolithic -2.786
  185. gendstat: ONG.SG Iran_GanjDareh_N -2.533
  186. gendstat: Turkey_Epipaleolithic Iran_GanjDareh_N 0.943
  187.  
  188. removing /tmp/fsx.2839
  189. ##end of qpAdm: 9.676 seconds cpu 0.426 Mbytes in use
  190.  
Advertisement
Add Comment
Please, Sign In to add comment
Public Pastes
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!