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  1. /home/dosas/AdmixTools/src/qpAdm: parameter file: parqpadm.txt
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. fstatsname: /home/dosas/Documents/qpAdm/fstatsa.txt
  5. popleft: /home/dosas/Documents/qpAdm/left.txt
  6. popright: /home/dosas/Documents/qpAdm/right.txt
  7. details: YES
  8. ## /home/dosas/AdmixTools/src/qpAdm -p parqpadm.txt
  9. ## qpAdm version: 2050
  10. seed: 164952115
  11. inbreed set NO
  12.  
  13. left pops:
  14. dosasnebula
  15. Turkey_N
  16. Russia_Samara_EBA_Yamnaya
  17. CHG
  18. Iran_GanjDareh_N
  19.  
  20. right pops:
  21. Mbuti.DG
  22. Russia_Ust_Ishim.DG
  23. China_Tianyuan
  24. Russia_Sunghir3.SG
  25. Russia_Kostenki14.SG
  26. Russia_MA1_HG.SG
  27. SATP
  28. Russia_DevilsCave_N.SG
  29. Papuan.DG
  30. Switzerland_Bichon.SG
  31. Israel_Natufian
  32. Morocco_Iberomaurusian
  33. WHG
  34. Turkey_Epipaleolithic
  35. ONG.SG
  36.  
  37. codimension 1
  38. f4info:
  39. f4rank: 3 dof: 11 chisq: 19.480 tail: 0.053003123 dofdiff: 13 chisqdiff: -19.480 taildiff: 1
  40. B:
  41. scale 1.000 1.000 1.000
  42. Russia_Ust_Ishim.DG 0.173 0.371 -0.278
  43. China_Tianyuan 0.115 0.515 -0.652
  44. Russia_Sunghir3.SG 0.645 0.734 0.039
  45. Russia_Kostenki14.SG 0.480 0.653 -0.110
  46. Russia_MA1_HG.SG -0.063 2.036 -1.699
  47. SATP -1.373 1.471 2.273
  48. Russia_DevilsCave_N.SG -0.057 0.772 -0.347
  49. Papuan.DG -0.010 0.513 -0.525
  50. Switzerland_Bichon.SG 1.003 1.355 -0.451
  51. Israel_Natufian 1.699 -0.775 1.040
  52. Morocco_Iberomaurusian 0.905 -0.095 0.424
  53. WHG 1.064 1.400 -0.384
  54. Turkey_Epipaleolithic 2.361 -0.792 1.795
  55. ONG.SG 0.021 0.657 -0.445
  56. A:
  57. scale 402.197 637.966 874.771
  58. Turkey_N 0.614 -0.290 0.478
  59. Russia_Samara_EBA_Yamnaya -0.003 1.375 -0.677
  60. CHG -1.312 0.755 1.643
  61. Iran_GanjDareh_N -1.379 -1.207 -0.783
  62.  
  63.  
  64. full rank
  65. f4info:
  66. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 19.480 taildiff: 0.053003123
  67. B:
  68. scale 498.068 361.911 279.970 274.353
  69. Russia_Ust_Ishim.DG 0.235 0.588 -0.026 -0.156
  70. China_Tianyuan 0.314 0.967 0.022 0.067
  71. Russia_Sunghir3.SG 0.468 0.679 -0.229 -0.915
  72. Russia_Kostenki14.SG 0.581 0.846 -0.017 -0.538
  73. Russia_MA1_HG.SG -0.669 2.297 0.015 -0.416
  74. SATP -0.640 0.605 3.028 0.036
  75. Russia_DevilsCave_N.SG 0.092 1.029 0.357 -0.042
  76. Papuan.DG -0.301 0.547 -0.105 -0.160
  77. Switzerland_Bichon.SG 0.157 1.064 -0.808 -1.658
  78. Israel_Natufian 1.909 -0.788 -1.216 -1.404
  79. Morocco_Iberomaurusian 0.930 -0.107 -0.570 -0.855
  80. WHG 0.284 1.125 -0.749 -1.706
  81. Turkey_Epipaleolithic 2.777 -0.843 -1.262 -2.068
  82. ONG.SG 0.057 0.896 0.157 -0.070
  83. A:
  84. scale 2.000 2.000 2.000 2.000
  85. Turkey_N 2.000 0.000 0.000 0.000
  86. Russia_Samara_EBA_Yamnaya 0.000 2.000 0.000 0.000
  87. CHG 0.000 0.000 2.000 0.000
  88. Iran_GanjDareh_N 0.000 0.000 0.000 2.000
  89.  
  90.  
  91. best coefficients: 0.517 0.251 0.043 0.189
  92. totmean: 0.517 0.251 0.043 0.189
  93. zzevarboot
  94. 0.494956750 0.292361423 0.135195230 0.077486598
  95. 0.001430693 -0.001086431 0.000153753
  96. 0.000117824 0.001939066 -0.000796797
  97. -0.003244992 0.000855861 0.001757521
  98. -0.003921595 -0.001869740 -0.001042202
  99. zzevarboot2
  100. 0.537396325 0.209419673 -0.027316100 0.280500103
  101. 0.001491826 0.000205376 0.000816714
  102. -0.000438754 0.002292946 -0.000850358
  103. -0.003495688 0.001164647 0.001878644
  104. -0.002870968 -0.001991951 -0.000746882
  105. boot mean: 0.517 0.251 0.043 0.188
  106. bootstrap saimpling of F-coeffs: 1000
  107. zzjmean 0.517 0.251 0.043 0.188
  108. std. errors: 0.031 0.048 0.045 0.055
  109.  
  110. error covariance (* 1,000,000)
  111. 986 -754 91 -324
  112. -754 2308 -482 -1072
  113. 91 -482 2061 -1670
  114. -324 -1072 -1670 3066
  115.  
  116.  
  117. summ: dosasnebula 4 0.053003 0.517 0.251 0.043 0.188 986 -754 91 -324 2308 ...
  118. -482 -1072 2061 -1670 3066
  119.  
  120. fixed pat wt dof chisq tail prob
  121. 0000 0 11 19.480 0.0530031 0.517 0.251 0.043 0.189
  122. 0001 1 12 30.935 0.00201535 0.546 0.303 0.151 0.000
  123. 0010 1 12 20.364 0.0605074 0.516 0.260 0.000 0.224
  124. 0100 1 12 49.366 1.80428e-06 0.597 0.000 0.084 0.318
  125. 1000 1 12 321.504 0 0.000 1.593 -6.594 6.001 infeasible
  126. 0011 2 13 50.807 2.16524e-06 0.545 0.455 0.000 0.000
  127. 0101 2 13 78.679 1.95382e-11 0.678 0.000 0.322 0.000
  128. 0110 2 13 52.631 1.047e-06 0.599 0.000 0.000 0.401
  129. 1001 2 13 285.778 0 0.000 0.851 0.149 0.000
  130. 1010 2 13 248.359 0 0.000 0.632 0.000 0.368
  131. 1100 2 13 329.144 0 0.000 0.000 -20.655 21.655 infeasible
  132. 0111 3 14 247.693 0 1.000 0.000 0.000 0.000
  133. 1011 3 14 295.529 0 0.000 1.000 0.000 0.000
  134. 1101 3 14 386.339 0 0.000 0.000 1.000 0.000
  135. 1110 3 14 375.761 0 0.000 0.000 0.000 1.000
  136. best pat: 0000 0.0530031 - -
  137. best pat: 0010 0.0605074 chi(nested): 0.884 p-value for nested model: 0.347129
  138. best pat: 0011 2.16524e-06 chi(nested): 30.443 p-value for nested model: 3.43798e-08
  139. best pat: 0111 8.61974e-45 chi(nested): 196.886 p-value for nested model: 9.98636e-45
  140.  
  141. coeffs: 0.517 0.251 0.043 0.189
  142.  
  143. ## dscore:: f_4(Base, Fit, Rbase, right2)
  144. ## genstat:: f_4(Base, Fit, right1, right2)
  145.  
  146. details: Turkey_N Russia_Ust_Ishim.DG 0.000472 1.055145
  147. details: Russia_Samara_EBA_Yamnaya Russia_Ust_Ishim.DG 0.001625 3.376052
  148. details: CHG Russia_Ust_Ishim.DG -0.000091 -0.148578
  149. details: Iran_GanjDareh_N Russia_Ust_Ishim.DG -0.000567 -1.098002
  150. dscore: Russia_Ust_Ishim.DG f4: 0.000541 Z: 1.234957
  151.  
  152. details: Turkey_N China_Tianyuan 0.000631 1.378151
  153. details: Russia_Samara_EBA_Yamnaya China_Tianyuan 0.002673 5.357147
  154. details: CHG China_Tianyuan 0.000078 0.121003
  155. details: Iran_GanjDareh_N China_Tianyuan 0.000243 0.457857
  156. dscore: China_Tianyuan f4: 0.001047 Z: 2.331906
  157.  
  158. details: Turkey_N Russia_Sunghir3.SG 0.000940 1.971216
  159. details: Russia_Samara_EBA_Yamnaya Russia_Sunghir3.SG 0.001876 3.547777
  160. details: CHG Russia_Sunghir3.SG -0.000819 -1.189944
  161. details: Iran_GanjDareh_N Russia_Sunghir3.SG -0.003335 -5.742957
  162. dscore: Russia_Sunghir3.SG f4: 0.000293 Z: 0.613995
  163.  
  164. details: Turkey_N Russia_Kostenki14.SG 0.001166 2.494148
  165. details: Russia_Samara_EBA_Yamnaya Russia_Kostenki14.SG 0.002338 4.615404
  166. details: CHG Russia_Kostenki14.SG -0.000061 -0.090345
  167. details: Iran_GanjDareh_N Russia_Kostenki14.SG -0.001963 -3.424182
  168. dscore: Russia_Kostenki14.SG f4: 0.000817 Z: 1.748786
  169.  
  170. details: Turkey_N Russia_MA1_HG.SG -0.001343 -2.670187
  171. details: Russia_Samara_EBA_Yamnaya Russia_MA1_HG.SG 0.006346 11.602221
  172. details: CHG Russia_MA1_HG.SG 0.000055 0.076326
  173. details: Iran_GanjDareh_N Russia_MA1_HG.SG -0.001515 -2.541079
  174. dscore: Russia_MA1_HG.SG f4: 0.000614 Z: 1.238939
  175.  
  176. details: Turkey_N SATP -0.001285 -2.612360
  177. details: Russia_Samara_EBA_Yamnaya SATP 0.001671 3.162171
  178. details: CHG SATP 0.010817 14.298174
  179. details: Iran_GanjDareh_N SATP 0.000131 0.227416
  180. dscore: SATP f4: 0.000245 Z: 0.511314
  181.  
  182. details: Turkey_N Russia_DevilsCave_N.SG 0.000186 0.486798
  183. details: Russia_Samara_EBA_Yamnaya Russia_DevilsCave_N.SG 0.002843 6.843309
  184. details: CHG Russia_DevilsCave_N.SG 0.001273 2.371245
  185. details: Iran_GanjDareh_N Russia_DevilsCave_N.SG -0.000153 -0.325240
  186. dscore: Russia_DevilsCave_N.SG f4: 0.000836 Z: 2.197699
  187.  
  188. details: Turkey_N Papuan.DG -0.000605 -1.678249
  189. details: Russia_Samara_EBA_Yamnaya Papuan.DG 0.001510 3.743260
  190. details: CHG Papuan.DG -0.000376 -0.743915
  191. details: Iran_GanjDareh_N Papuan.DG -0.000585 -1.370668
  192. dscore: Papuan.DG f4: -0.000060 Z: -0.167940
  193.  
  194. details: Turkey_N Switzerland_Bichon.SG 0.000316 0.652692
  195. details: Russia_Samara_EBA_Yamnaya Switzerland_Bichon.SG 0.002940 5.506196
  196. details: CHG Switzerland_Bichon.SG -0.002887 -4.105025
  197. details: Iran_GanjDareh_N Switzerland_Bichon.SG -0.006043 -10.727116
  198. dscore: Switzerland_Bichon.SG f4: -0.000363 Z: -0.760494
  199.  
  200. details: Turkey_N Israel_Natufian 0.003833 7.436954
  201. details: Russia_Samara_EBA_Yamnaya Israel_Natufian -0.002178 -3.996532
  202. details: CHG Israel_Natufian -0.004344 -5.999589
  203. details: Iran_GanjDareh_N Israel_Natufian -0.005116 -8.641899
  204. dscore: Israel_Natufian f4: 0.000284 Z: 0.565772
  205.  
  206. details: Turkey_N Morocco_Iberomaurusian 0.001867 5.438038
  207. details: Russia_Samara_EBA_Yamnaya Morocco_Iberomaurusian -0.000296 -0.823146
  208. details: CHG Morocco_Iberomaurusian -0.002037 -4.228591
  209. details: Iran_GanjDareh_N Morocco_Iberomaurusian -0.003118 -7.783723
  210. dscore: Morocco_Iberomaurusian f4: 0.000215 Z: 0.642043
  211.  
  212. details: Turkey_N WHG 0.000570 1.228535
  213. details: Russia_Samara_EBA_Yamnaya WHG 0.003109 6.148262
  214. details: CHG WHG -0.002674 -4.337266
  215. details: Iran_GanjDareh_N WHG -0.006220 -11.363065
  216. dscore: WHG f4: -0.000214 Z: -0.468201
  217.  
  218. details: Turkey_N Turkey_Epipaleolithic 0.005576 11.418622
  219. details: Russia_Samara_EBA_Yamnaya Turkey_Epipaleolithic -0.002330 -4.160602
  220. details: CHG Turkey_Epipaleolithic -0.004509 -6.339866
  221. details: Iran_GanjDareh_N Turkey_Epipaleolithic -0.007537 -13.255009
  222. dscore: Turkey_Epipaleolithic f4: 0.000683 Z: 1.405447
  223.  
  224. details: Turkey_N ONG.SG 0.000115 0.315823
  225. details: Russia_Samara_EBA_Yamnaya ONG.SG 0.002475 6.208051
  226. details: CHG ONG.SG 0.000562 1.133320
  227. details: Iran_GanjDareh_N ONG.SG -0.000257 -0.583284
  228. dscore: ONG.SG f4: 0.000656 Z: 1.812122
  229.  
  230. gendstat: Mbuti.DG Russia_Ust_Ishim.DG 1.235
  231. gendstat: Mbuti.DG China_Tianyuan 2.332
  232. gendstat: Mbuti.DG Russia_Sunghir3.SG 0.614
  233. gendstat: Mbuti.DG Russia_Kostenki14.SG 1.749
  234. gendstat: Mbuti.DG Russia_MA1_HG.SG 1.239
  235. gendstat: Mbuti.DG SATP 0.511
  236. gendstat: Mbuti.DG Russia_DevilsCave_N.SG 2.198
  237. gendstat: Mbuti.DG Papuan.DG -0.168
  238. gendstat: Mbuti.DG Switzerland_Bichon.SG -0.760
  239. gendstat: Mbuti.DG Israel_Natufian 0.566
  240. gendstat: Mbuti.DG Morocco_Iberomaurusian 0.642
  241. gendstat: Mbuti.DG WHG -0.468
  242. gendstat: Mbuti.DG Turkey_Epipaleolithic 1.405
  243. gendstat: Mbuti.DG ONG.SG 1.812
  244. gendstat: Russia_Ust_Ishim.DG China_Tianyuan 0.965
  245. gendstat: Russia_Ust_Ishim.DG Russia_Sunghir3.SG -0.468
  246. gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG 0.518
  247. gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG 0.129
  248. gendstat: Russia_Ust_Ishim.DG SATP -0.521
  249. gendstat: Russia_Ust_Ishim.DG Russia_DevilsCave_N.SG 0.644
  250. gendstat: Russia_Ust_Ishim.DG Papuan.DG -1.346
  251. gendstat: Russia_Ust_Ishim.DG Switzerland_Bichon.SG -1.652
  252. gendstat: Russia_Ust_Ishim.DG Israel_Natufian -0.425
  253. gendstat: Russia_Ust_Ishim.DG Morocco_Iberomaurusian -0.664
  254. gendstat: Russia_Ust_Ishim.DG WHG -1.373
  255. gendstat: Russia_Ust_Ishim.DG Turkey_Epipaleolithic 0.252
  256. gendstat: Russia_Ust_Ishim.DG ONG.SG 0.265
  257. gendstat: China_Tianyuan Russia_Sunghir3.SG -1.411
  258. gendstat: China_Tianyuan Russia_Kostenki14.SG -0.416
  259. gendstat: China_Tianyuan Russia_MA1_HG.SG -0.748
  260. gendstat: China_Tianyuan SATP -1.324
  261. gendstat: China_Tianyuan Russia_DevilsCave_N.SG -0.467
  262. gendstat: China_Tianyuan Papuan.DG -2.537
  263. gendstat: China_Tianyuan Switzerland_Bichon.SG -2.435
  264. gendstat: China_Tianyuan Israel_Natufian -1.217
  265. gendstat: China_Tianyuan Morocco_Iberomaurusian -1.682
  266. gendstat: China_Tianyuan WHG -2.279
  267. gendstat: China_Tianyuan Turkey_Epipaleolithic -0.638
  268. gendstat: China_Tianyuan ONG.SG -0.903
  269. gendstat: Russia_Sunghir3.SG Russia_Kostenki14.SG 1.018
  270. gendstat: Russia_Sunghir3.SG Russia_MA1_HG.SG 0.596
  271. gendstat: Russia_Sunghir3.SG SATP -0.078
  272. gendstat: Russia_Sunghir3.SG Russia_DevilsCave_N.SG 1.092
  273. gendstat: Russia_Sunghir3.SG Papuan.DG -0.735
  274. gendstat: Russia_Sunghir3.SG Switzerland_Bichon.SG -1.245
  275. gendstat: Russia_Sunghir3.SG Israel_Natufian -0.014
  276. gendstat: Russia_Sunghir3.SG Morocco_Iberomaurusian -0.149
  277. gendstat: Russia_Sunghir3.SG WHG -0.948
  278. gendstat: Russia_Sunghir3.SG Turkey_Epipaleolithic 0.692
  279. gendstat: Russia_Sunghir3.SG ONG.SG 0.751
  280. gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG -0.371
  281. gendstat: Russia_Kostenki14.SG SATP -0.977
  282. gendstat: Russia_Kostenki14.SG Russia_DevilsCave_N.SG 0.036
  283. gendstat: Russia_Kostenki14.SG Papuan.DG -1.790
  284. gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG -2.208
  285. gendstat: Russia_Kostenki14.SG Israel_Natufian -0.875
  286. gendstat: Russia_Kostenki14.SG Morocco_Iberomaurusian -1.219
  287. gendstat: Russia_Kostenki14.SG WHG -2.020
  288. gendstat: Russia_Kostenki14.SG Turkey_Epipaleolithic -0.241
  289. gendstat: Russia_Kostenki14.SG ONG.SG -0.325
  290. gendstat: Russia_MA1_HG.SG SATP -0.604
  291. gendstat: Russia_MA1_HG.SG Russia_DevilsCave_N.SG 0.422
  292. gendstat: Russia_MA1_HG.SG Papuan.DG -1.372
  293. gendstat: Russia_MA1_HG.SG Switzerland_Bichon.SG -1.722
  294. gendstat: Russia_MA1_HG.SG Israel_Natufian -0.517
  295. gendstat: Russia_MA1_HG.SG Morocco_Iberomaurusian -0.764
  296. gendstat: Russia_MA1_HG.SG WHG -1.450
  297. gendstat: Russia_MA1_HG.SG Turkey_Epipaleolithic 0.119
  298. gendstat: Russia_MA1_HG.SG ONG.SG 0.085
  299. gendstat: SATP Russia_DevilsCave_N.SG 1.128
  300. gendstat: SATP Papuan.DG -0.578
  301. gendstat: SATP Switzerland_Bichon.SG -1.091
  302. gendstat: SATP Israel_Natufian 0.064
  303. gendstat: SATP Morocco_Iberomaurusian -0.055
  304. gendstat: SATP WHG -0.822
  305. gendstat: SATP Turkey_Epipaleolithic 0.737
  306. gendstat: SATP ONG.SG 0.819
  307. gendstat: Russia_DevilsCave_N.SG Papuan.DG -2.441
  308. gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG -2.319
  309. gendstat: Russia_DevilsCave_N.SG Israel_Natufian -0.980
  310. gendstat: Russia_DevilsCave_N.SG Morocco_Iberomaurusian -1.462
  311. gendstat: Russia_DevilsCave_N.SG WHG -2.177
  312. gendstat: Russia_DevilsCave_N.SG Turkey_Epipaleolithic -0.289
  313. gendstat: Russia_DevilsCave_N.SG ONG.SG -0.505
  314. gendstat: Papuan.DG Switzerland_Bichon.SG -0.609
  315. gendstat: Papuan.DG Israel_Natufian 0.604
  316. gendstat: Papuan.DG Morocco_Iberomaurusian 0.660
  317. gendstat: Papuan.DG WHG -0.320
  318. gendstat: Papuan.DG Turkey_Epipaleolithic 1.440
  319. gendstat: Papuan.DG ONG.SG 2.158
  320. gendstat: Switzerland_Bichon.SG Israel_Natufian 1.067
  321. gendstat: Switzerland_Bichon.SG Morocco_Iberomaurusian 1.171
  322. gendstat: Switzerland_Bichon.SG WHG 0.343
  323. gendstat: Switzerland_Bichon.SG Turkey_Epipaleolithic 1.803
  324. gendstat: Switzerland_Bichon.SG ONG.SG 1.994
  325. gendstat: Israel_Natufian Morocco_Iberomaurusian -0.131
  326. gendstat: Israel_Natufian WHG -0.821
  327. gendstat: Israel_Natufian Turkey_Epipaleolithic 0.657
  328. gendstat: Israel_Natufian ONG.SG 0.669
  329. gendstat: Morocco_Iberomaurusian WHG -0.882
  330. gendstat: Morocco_Iberomaurusian Turkey_Epipaleolithic 0.974
  331. gendstat: Morocco_Iberomaurusian ONG.SG 1.051
  332. gendstat: WHG Turkey_Epipaleolithic 1.648
  333. gendstat: WHG ONG.SG 1.821
  334. gendstat: Turkey_Epipaleolithic ONG.SG -0.053
  335.  
  336. worst Z-score with right hand mix
  337. f4(Target, Fit, Base, mix of Right pops; Z: 4.410 sum: 1.000
  338. Russia_Ust_Ishim.DG 0.148
  339. China_Tianyuan 0.756
  340. Russia_Sunghir3.SG -0.179
  341. Russia_Kostenki14.SG 0.638
  342. Russia_MA1_HG.SG 0.281
  343. SATP 0.002
  344. Russia_DevilsCave_N.SG 0.971
  345. Papuan.DG -1.414
  346. Switzerland_Bichon.SG -0.509
  347. Israel_Natufian 0.006
  348. Morocco_Iberomaurusian -0.085
  349. WHG -0.545
  350. Turkey_Epipaleolithic 0.318
  351. ONG.SG 0.614
  352.  
  353. oldmode set: terminating
  354. ##end of qpAdm: 15.153 seconds cpu 1.638 Mbytes in use
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