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- ### THE INPUT PARAMETERS
- ##PARAMETER NAME: VALUE
- indivname: Indian.ind
- snpname: Indian.snp
- genotypename: Indian.geno
- popleft: left.txt
- popright: right.txt
- inbreed: NO
- allsnps: YES
- details: YES
- ## qpAdm version: 1201
- seed: -2090577974
- read 1073741824 bytes
- read 1493178743 bytes
- packed geno read OK
- end of inpack
- left pops:
- Kumaoni_Brahmin
- Onge.SG
- Indus_PeripheryB
- Russia_Srubnaya_Alakul.SG
- Nepal_Chokhopani_2800BP.SG
- right pops:
- Mbuti.DG
- EHG
- CHG
- WSHG
- Turkey_N
- Levant_PPN
- China_Paleolithic
- Iran_GanjDareh_N
- Mongolia_North_N
- Serbia_IronGates_Mesolithic
- 0 Kumaoni_Brahmin 6
- 1 Onge.SG 6
- 2 Indus_PeripheryB 3
- 3 Russia_Srubnaya_Alakul.SG 7
- 4 Nepal_Chokhopani_2800BP.SG 1
- 5 Mbuti.DG 10
- 6 EHG 16
- 7 CHG 2
- 8 WSHG 2
- 9 Turkey_N 24
- 10 Levant_PPN 10
- 11 China_Paleolithic 2
- 12 Iran_GanjDareh_N 8
- 13 Mongolia_North_N 5
- 14 Serbia_IronGates_Mesolithic 32
- jackknife block size: 0.050
- snps: 1150571 indivs: 134
- number of blocks for block jackknife: 714
- ## ncols: 1150571
- coverage: Kumaoni_Brahmin 562052
- coverage: Onge.SG 1143397
- coverage: Indus_PeripheryB 802231
- coverage: Russia_Srubnaya_Alakul.SG 1148418
- coverage: Nepal_Chokhopani_2800BP.SG 1131012
- coverage: Mbuti.DG 1149658
- coverage: EHG 1113964
- coverage: CHG 1147700
- coverage: WSHG 856571
- coverage: Turkey_N 1138912
- coverage: Levant_PPN 660682
- coverage: China_Paleolithic 1008603
- coverage: Iran_GanjDareh_N 1057033
- coverage: Mongolia_North_N 1057835
- coverage: Serbia_IronGates_Mesolithic 1138678
- Effective number of blocks: 615.278
- numsnps used: 1150571
- codimension 1
- f4info:
- f4rank: 3 dof: 6 chisq: 13.555 tail: 0.0350274418 dofdiff: 8 chisqdiff: -13.555 taildiff: 1
- B:
- scale 1.000 1.000 1.000
- EHG 1.146 0.774 -0.675
- CHG 1.042 -0.435 0.490
- WSHG 0.717 0.601 0.314
- Turkey_N 1.131 0.294 -0.233
- Levant_PPN 0.822 0.091 0.155
- China_Paleolithic -0.792 0.855 -0.347
- Iran_GanjDareh_N 0.845 -1.131 1.882
- Mongolia_North_N -1.130 2.113 1.255
- Serbia_IronGates_Mesolithic 1.231 1.131 -1.700
- A:
- scale 300.063 786.078 1629.163
- Onge.SG -1.215 -0.315 -1.395
- Indus_PeripheryB -0.045 -0.520 0.540
- Russia_Srubnaya_Alakul.SG 1.039 1.037 -0.571
- Nepal_Chokhopani_2800BP.SG -1.201 1.599 1.198
- full rank
- f4info:
- f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 6 chisqdiff: 13.555 taildiff: 0.0350274418
- B:
- scale 256.174 1284.624 271.392 206.059
- EHG -1.088 -0.908 1.450 -0.689
- CHG -1.192 0.060 0.744 -0.978
- WSHG -0.859 -0.325 0.889 -0.272
- Turkey_N -1.156 -0.568 1.195 -0.834
- Levant_PPN -0.875 0.120 0.828 -0.585
- China_Paleolithic 0.870 -0.346 -0.362 1.000
- Iran_GanjDareh_N -1.147 2.006 0.250 -0.853
- Mongolia_North_N 0.698 -0.931 -0.407 2.031
- Serbia_IronGates_Mesolithic -0.997 -1.649 1.755 -0.775
- A:
- scale 2.000 2.000 2.000 2.000
- Onge.SG 2.000 0.000 0.000 0.000
- Indus_PeripheryB 0.000 2.000 0.000 0.000
- Russia_Srubnaya_Alakul.SG 0.000 0.000 2.000 0.000
- Nepal_Chokhopani_2800BP.SG 0.000 0.000 0.000 2.000
- best coefficients: 0.150 0.552 0.252 0.046
- Jackknife mean: 0.150252019 0.551826001 0.252160590 0.045761389
- std. errors: 0.036 0.024 0.015 0.024
- error covariance (* 1,000,000)
- 1291 -462 -42 -787
- -462 597 -253 118
- -42 -253 213 83
- -787 118 83 586
- summ: Kumaoni_Brahmin 4 0.035027 0.150 0.552 0.252 0.046 1291 -462 -42 -787 597 ...
- -253 118 213 83 586
- fixed pat wt dof chisq tail prob
- 0000 0 6 13.555 0.0350274 0.150 0.552 0.252 0.046
- 0001 1 7 17.438 0.0147797 0.210 0.544 0.246 0.000
- 0010 1 7 198.301 0 0.044 0.936 0.000 0.021
- 0100 1 7 242.740 0 1.401 0.000 0.302 -0.703 infeasible
- 1000 1 7 29.693 0.000108115 0.000 0.613 0.253 0.134
- 0011 2 8 197.250 0 0.082 0.918 0.000 0.000
- 0101 2 8 453.462 0 0.497 0.000 0.503 0.000
- 0110 2 8 264.177 0 2.531 0.000 0.000 -1.531 infeasible
- 1001 2 8 141.151 1.36704e-26 0.000 0.842 0.158 0.000
- 1010 2 8 202.970 0 0.000 0.955 0.000 0.045
- 1100 2 8 680.292 0 0.000 0.000 0.630 0.370
- 0111 3 9 1527.683 0 1.000 0.000 0.000 0.000
- 1011 3 9 209.669 0 0.000 1.000 0.000 0.000
- 1101 3 9 2245.103 0 0.000 0.000 1.000 0.000
- 1110 3 9 2263.829 0 0.000 0.000 0.000 1.000
- best pat: 0000 0.0350274 - -
- best pat: 0001 0.0147797 chi(nested): 3.883 p-value for nested model: 0.0487635
- best pat: 1001 1.36704e-26 chi(nested): 123.713 p-value for nested model: 9.73405e-29
- best pat: 1011 3.10297e-40 chi(nested): 68.517 p-value for nested model: 1.25776e-16
- coeffs: 0.150 0.552 0.252 0.046
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: Onge.SG EHG -0.004248 -18.160586
- details: Indus_PeripheryB EHG -0.000707 -3.228471
- details: Russia_Srubnaya_Alakul.SG EHG 0.005342 29.337361
- details: Nepal_Chokhopani_2800BP.SG EHG -0.003346 -10.955925
- dscore: EHG f4: 0.000166 Z: 1.118578
- details: Onge.SG CHG -0.004653 -17.569552
- details: Indus_PeripheryB CHG 0.000047 0.182438
- details: Russia_Srubnaya_Alakul.SG CHG 0.002741 13.442884
- details: Nepal_Chokhopani_2800BP.SG CHG -0.004746 -14.645836
- dscore: CHG f4: -0.000199 Z: -1.142583
- details: Onge.SG WSHG -0.003353 -12.434583
- details: Indus_PeripheryB WSHG -0.000253 -0.932415
- details: Russia_Srubnaya_Alakul.SG WSHG 0.003275 15.058475
- details: Nepal_Chokhopani_2800BP.SG WSHG -0.001319 -3.902270
- dscore: WSHG f4: 0.000122 Z: 0.659938
- details: Onge.SG Turkey_N -0.004513 -20.918055
- details: Indus_PeripheryB Turkey_N -0.000442 -2.205650
- details: Russia_Srubnaya_Alakul.SG Turkey_N 0.004404 25.487154
- details: Nepal_Chokhopani_2800BP.SG Turkey_N -0.004047 -15.164181
- dscore: Turkey_N f4: 0.000003 Z: 0.023886
- details: Onge.SG Levant_PPN -0.003416 -15.825131
- details: Indus_PeripheryB Levant_PPN 0.000093 0.388948
- details: Russia_Srubnaya_Alakul.SG Levant_PPN 0.003052 17.329584
- details: Nepal_Chokhopani_2800BP.SG Levant_PPN -0.002841 -10.188814
- dscore: Levant_PPN f4: 0.000178 Z: 1.126884
- details: Onge.SG China_Paleolithic 0.003395 11.723911
- details: Indus_PeripheryB China_Paleolithic -0.000269 -1.109205
- details: Russia_Srubnaya_Alakul.SG China_Paleolithic -0.001335 -6.730709
- details: Nepal_Chokhopani_2800BP.SG China_Paleolithic 0.004854 13.871424
- dscore: China_Paleolithic f4: 0.000246 Z: 1.430598
- details: Onge.SG Iran_GanjDareh_N -0.004478 -19.751947
- details: Indus_PeripheryB Iran_GanjDareh_N 0.001562 7.222326
- details: Russia_Srubnaya_Alakul.SG Iran_GanjDareh_N 0.000923 5.337892
- details: Nepal_Chokhopani_2800BP.SG Iran_GanjDareh_N -0.004141 -14.521164
- dscore: Iran_GanjDareh_N f4: 0.000233 Z: 1.570782
- details: Onge.SG Mongolia_North_N 0.002726 10.286657
- details: Indus_PeripheryB Mongolia_North_N -0.000724 -3.151323
- details: Russia_Srubnaya_Alakul.SG Mongolia_North_N -0.001500 -7.884942
- details: Nepal_Chokhopani_2800BP.SG Mongolia_North_N 0.009858 31.307792
- dscore: Mongolia_North_N f4: 0.000082 Z: 0.497402
- details: Onge.SG Serbia_IronGates_Mesolithic -0.003893 -16.268063
- details: Indus_PeripheryB Serbia_IronGates_Mesolithic -0.001284 -5.894109
- details: Russia_Srubnaya_Alakul.SG Serbia_IronGates_Mesolithic 0.006468 33.984806
- details: Nepal_Chokhopani_2800BP.SG Serbia_IronGates_Mesolithic -0.003762 -12.602536
- dscore: Serbia_IronGates_Mesolithic f4: 0.000165 Z: 1.109494
- gendstat: Mbuti.DG EHG 1.119
- gendstat: Mbuti.DG CHG -1.143
- gendstat: Mbuti.DG WSHG 0.660
- gendstat: Mbuti.DG Turkey_N 0.024
- gendstat: Mbuti.DG Levant_PPN 1.127
- gendstat: Mbuti.DG China_Paleolithic 1.431
- gendstat: Mbuti.DG Iran_GanjDareh_N 1.571
- gendstat: Mbuti.DG Mongolia_North_N 0.497
- gendstat: Mbuti.DG Serbia_IronGates_Mesolithic 1.109
- gendstat: EHG CHG -2.167
- gendstat: EHG WSHG -0.300
- gendstat: EHG Turkey_N -1.279
- gendstat: EHG Levant_PPN 0.075
- gendstat: EHG China_Paleolithic 0.460
- gendstat: EHG Iran_GanjDareh_N 0.446
- gendstat: EHG Mongolia_North_N -0.527
- gendstat: EHG Serbia_IronGates_Mesolithic -0.006
- gendstat: CHG WSHG 1.546
- gendstat: CHG Turkey_N 1.282
- gendstat: CHG Levant_PPN 1.945
- gendstat: CHG China_Paleolithic 2.147
- gendstat: CHG Iran_GanjDareh_N 2.564
- gendstat: CHG Mongolia_North_N 1.449
- gendstat: CHG Serbia_IronGates_Mesolithic 2.185
- gendstat: WSHG Turkey_N -0.698
- gendstat: WSHG Levant_PPN 0.276
- gendstat: WSHG China_Paleolithic 0.627
- gendstat: WSHG Iran_GanjDareh_N 0.606
- gendstat: WSHG Mongolia_North_N -0.217
- gendstat: WSHG Serbia_IronGates_Mesolithic 0.264
- gendstat: Turkey_N Levant_PPN 1.357
- gendstat: Turkey_N China_Paleolithic 1.414
- gendstat: Turkey_N Iran_GanjDareh_N 1.764
- gendstat: Turkey_N Mongolia_North_N 0.504
- gendstat: Turkey_N Serbia_IronGates_Mesolithic 1.522
- gendstat: Levant_PPN China_Paleolithic 0.351
- gendstat: Levant_PPN Iran_GanjDareh_N 0.324
- gendstat: Levant_PPN Mongolia_North_N -0.511
- gendstat: Levant_PPN Serbia_IronGates_Mesolithic -0.085
- gendstat: China_Paleolithic Iran_GanjDareh_N -0.071
- gendstat: China_Paleolithic Mongolia_North_N -1.003
- gendstat: China_Paleolithic Serbia_IronGates_Mesolithic -0.459
- gendstat: Iran_GanjDareh_N Mongolia_North_N -0.871
- gendstat: Iran_GanjDareh_N Serbia_IronGates_Mesolithic -0.467
- gendstat: Mongolia_North_N Serbia_IronGates_Mesolithic 0.512
- ##end of qpAdm: 38.124 seconds cpu 1279.787 Mbytes in use
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