API tools faq
paste
misnomer001

Areni Armenia_C Pass

misnomer001
Jan 5th, 2020
115
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 15.37 KB | None | 0 0
raw download clone embed print report
  1. ### THE INPUT PARAMETERS
  2. ##PARAMETER NAME: VALUE
  3. allsnps: YES
  4. ## qpAdm version: 810
  5. seed: 1848774845
  6.  
  7. left pops:
  8. Armenia_C
  9. Anatolia_N
  10. Caucasus_Eneolithic
  11. Geoksyur_EN
  12. Russia_Khvalynsk_EN
  13.  
  14. right pops:
  15. Mbuti.DG
  16. Morocco_Iberomaurusian
  17. Ganj_Dareh_N
  18. PPN
  19. Anatolia_Meso
  20. Iberia_MN
  21. Russia_MA1.SG
  22. Georgia_Satsurblia.SG
  23. Kostenki14.SG
  24. Russia_Karelia_HG
  25. Serbia_Iron_Gates_HG
  26. Tyumen_HG
  27. Onge.DG
  28.  
  29. 0 Armenia_C 5
  30. 1 Anatolia_N 22
  31. 2 Caucasus_Eneolithic 3
  32. 3 Geoksyur_EN 21
  33. 4 Russia_Khvalynsk_EN 3
  34. 5 Mbuti.DG 5
  35. 6 Morocco_Iberomaurusian 6
  36. 7 Ganj_Dareh_N 7
  37. 8 PPN 8
  38. 9 Anatolia_Meso 1
  39. 10 Iberia_MN 4
  40. 11 Russia_MA1.SG 1
  41. 12 Georgia_Satsurblia.SG 1
  42. 13 Kostenki14.SG 1
  43. 14 Russia_Karelia_HG 2
  44. 15 Serbia_Iron_Gates_HG 32
  45. 16 Tyumen_HG 2
  46. 17 Onge.DG 2
  47. jackknife block size: 0.050
  48. snps: 1150524 indivs: 126
  49. number of blocks for block jackknife: 552
  50. ## ncols: 1150524
  51. coverage: Armenia_C 1033326
  52. coverage: Anatolia_N 1134099
  53. coverage: Caucasus_Eneolithic 784983
  54. coverage: Geoksyur_EN 1018577
  55. coverage: Russia_Khvalynsk_EN 758497
  56. coverage: Mbuti.DG 1150376
  57. coverage: Morocco_Iberomaurusian 1101342
  58. coverage: Ganj_Dareh_N 1029695
  59. coverage: PPN 835499
  60. coverage: Anatolia_Meso 989345
  61. coverage: Iberia_MN 967760
  62. coverage: Russia_MA1.SG 805960
  63. coverage: Georgia_Satsurblia.SG 801311
  64. coverage: Kostenki14.SG 1048972
  65. coverage: Russia_Karelia_HG 1010733
  66. coverage: Serbia_Iron_Gates_HG 1139259
  67. coverage: Tyumen_HG 807474
  68. coverage: Onge.DG 1120748
  69. dof (jackknife): 466.375
  70. numsnps used: 1150524
  71. codimension 1
  72. f4info:
  73. f4rank: 3 dof: 9 chisq: 14.309 tail: 0.111748783 dofdiff: 11 chisqdiff: -14.309 taildiff: 1
  74. B:
  75. scale 1.000 1.000 1.000
  76. Morocco_Iberomaurusian -0.143 0.720 0.224
  77. Ganj_Dareh_N 0.026 -1.297 -1.959
  78. PPN -0.821 1.197 -0.331
  79. Anatolia_Meso -0.972 1.766 -0.261
  80. Iberia_MN -0.525 1.468 0.223
  81. Russia_MA1.SG 1.273 0.083 -0.224
  82. Georgia_Satsurblia.SG -0.006 -0.520 2.190
  83. Kostenki14.SG 0.260 0.557 0.290
  84. Russia_Karelia_HG 1.978 0.811 1.031
  85. Serbia_Iron_Gates_HG 0.913 1.351 1.244
  86. Tyumen_HG 1.874 0.151 -0.422
  87. Onge.DG 0.375 0.004 -0.405
  88. A:
  89. scale 406.842 646.297 3026.325
  90. Anatolia_N -0.620 1.164 -0.608
  91. Caucasus_Eneolithic -0.204 -0.705 1.697
  92. Geoksyur_EN 0.125 -1.389 -0.825
  93. Russia_Khvalynsk_EN 1.887 0.467 -0.265
  94.  
  95.  
  96. full rank
  97. f4info:
  98. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 14.309 taildiff: 0.111748783
  99. B:
  100. scale 1.000 1.000 1.000 1.000
  101. Morocco_Iberomaurusian -0.149 0.724 0.121 0.481
  102. Ganj_Dareh_N 0.044 -1.288 -1.771 -0.223
  103. PPN -0.833 1.210 -0.419 0.087
  104. Anatolia_Meso -0.994 1.776 -0.409 0.345
  105. Iberia_MN -0.544 1.470 0.086 0.217
  106. Russia_MA1.SG 1.274 0.070 -0.330 0.682
  107. Georgia_Satsurblia.SG 0.008 -0.533 2.458 0.213
  108. Kostenki14.SG 0.257 0.556 0.279 1.894
  109. Russia_Karelia_HG 1.965 0.793 0.798 -0.432
  110. Serbia_Iron_Gates_HG 0.897 1.337 1.005 -2.487
  111. Tyumen_HG 1.871 0.144 -0.655 0.389
  112. Onge.DG 0.375 0.008 -0.439 -0.960
  113. A:
  114. scale 410.085 648.844 3197.424 7221.303
  115. Anatolia_N -0.659 1.112 -0.634 -0.974
  116. Caucasus_Eneolithic -0.215 -0.661 1.579 -1.176
  117. Geoksyur_EN 0.076 -1.445 -0.993 -0.946
  118. Russia_Khvalynsk_EN 1.874 0.488 -0.345 -0.879
  119.  
  120.  
  121. best coefficients: 0.374 0.265 0.225 0.136
  122. Jackknife mean: 0.373641903 0.265127003 0.224641487 0.136589606
  123. std. errors: 0.034 0.082 0.051 0.014
  124.  
  125. error covariance (* 1000000)
  126. 1129 -2498 1320 49
  127. -2498 6729 -3947 -284
  128. 1320 -3947 2592 35
  129. 49 -284 35 200
  130.  
  131.  
  132. summ: Armenia_C 4 0.111749 0.374 0.265 0.225 0.137 1129 -2498 1320 49 6729 -3947 -284 2592 35 200
  133.  
  134. fixed pat wt dof chisq tail prob
  135. 0000 0 9 14.309 0.111749 0.374 0.265 0.225 0.136
  136. 0001 1 10 104.412 7.10805e-18 -0.443 2.540 -1.097 0.000 infeasible
  137. 0010 1 10 29.755 0.000939429 0.257 0.614 -0.000 0.129
  138. 0100 1 10 28.687 0.00139991 0.472 0.000 0.380 0.148
  139. 1000 1 10 85.414 4.3247e-14 0.000 1.276 -0.353 0.077 infeasible
  140. 0011 2 11 73.068 3.17753e-11 0.195 0.805 -0.000 0.000
  141. 0101 2 11 140.907 1.06512e-24 0.513 -0.000 0.487 0.000
  142. 0110 2 11 491.929 0 0.641 0.000 -0.000 0.359
  143. 1001 2 11 73.121 3.10387e-11 -0.000 1.325 -0.325 0.000 infeasible
  144. 1010 2 11 86.831 6.94632e-14 0.000 0.923 -0.000 0.077
  145. 1100 2 11 936.992 0 -0.000 0.000 0.764 0.236
  146. 0111 3 12 1127.468 0 1.000 -0.000 -0.000 0.000
  147. 1011 3 12 96.579 2.59783e-15 0.000 1.000 -0.000 0.000
  148. 1101 3 12 1070.096 0 0.000 -0.000 1.000 0.000
  149. 1110 3 12 1716.756 0 0.000 0.000 -0.000 1.000
  150. best pat: 0000 0.111749 - -
  151. best pat: 0100 0.00139991 chi(nested): 14.378 p-value for nested model: 0.000149534
  152. best pat: 0011 3.17753e-11 not nested
  153. best pat: 1011 2.59783e-15 chi(nested): 23.511 p-value for nested model: 1.24204e-06
  154.  
  155. coeffs: 0.374 0.265 0.225 0.136
  156.  
  157. ## dscore:: f_4(Base, Fit, Rbase, right2)
  158. ## genstat:: f_4(Base, Fit, right1, right2)
  159.  
  160. details: Anatolia_N Morocco_Iberomaurusian 0.001376 7.113216
  161. details: Caucasus_Eneolithic Morocco_Iberomaurusian -0.000683 -2.265746
  162. details: Geoksyur_EN Morocco_Iberomaurusian -0.001745 -7.927006
  163. details: Russia_Khvalynsk_EN Morocco_Iberomaurusian -0.000188 -0.689563
  164. dscore: Morocco_Iberomaurusian f4: -0.000085 Z: -0.474027
  165.  
  166. details: Anatolia_N Ganj_Dareh_N -0.001926 -9.586667
  167. details: Caucasus_Eneolithic Ganj_Dareh_N 0.000486 1.499600
  168. details: Geoksyur_EN Ganj_Dareh_N 0.003445 14.458440
  169. details: Russia_Khvalynsk_EN Ganj_Dareh_N -0.000546 -1.894232
  170. dscore: Ganj_Dareh_N f4: 0.000109 Z: 0.581947
  171.  
  172. details: Anatolia_N PPN 0.003455 16.953778
  173. details: Caucasus_Eneolithic PPN -0.001017 -3.141026
  174. details: Geoksyur_EN PPN -0.002757 -12.050392
  175. details: Russia_Khvalynsk_EN PPN -0.002828 -9.513912
  176. dscore: PPN f4: 0.000016 Z: 0.084695
  177.  
  178. details: Anatolia_N Anatolia_Meso 0.004670 16.986259
  179. details: Caucasus_Eneolithic Anatolia_Meso -0.001520 -3.654265
  180. details: Geoksyur_EN Anatolia_Meso -0.004112 -14.412145
  181. details: Russia_Khvalynsk_EN Anatolia_Meso -0.003225 -9.184161
  182. dscore: Anatolia_Meso f4: -0.000022 Z: -0.088410
  183.  
  184. details: Anatolia_N Iberia_MN 0.003344 16.354174
  185. details: Caucasus_Eneolithic Iberia_MN -0.001108 -3.391824
  186. details: Geoksyur_EN Iberia_MN -0.003437 -15.598706
  187. details: Russia_Khvalynsk_EN Iberia_MN -0.001402 -4.975484
  188. dscore: Iberia_MN f4: -0.000008 Z: -0.042904
  189.  
  190. details: Anatolia_N Russia_MA1.SG -0.002019 -7.541225
  191. details: Caucasus_Eneolithic Russia_MA1.SG -0.001000 -2.698901
  192. details: Geoksyur_EN Russia_MA1.SG 0.000075 0.268079
  193. details: Russia_Khvalynsk_EN Russia_MA1.SG 0.005874 16.505953
  194. dscore: Russia_MA1.SG f4: -0.000201 Z: -0.873311
  195.  
  196. details: Anatolia_N Georgia_Satsurblia.SG -0.001458 -5.454934
  197. details: Caucasus_Eneolithic Georgia_Satsurblia.SG 0.001796 4.979738
  198. details: Geoksyur_EN Georgia_Satsurblia.SG 0.000369 1.320425
  199. details: Russia_Khvalynsk_EN Georgia_Satsurblia.SG -0.000640 -1.776939
  200. dscore: Georgia_Satsurblia.SG f4: -0.000074 Z: -0.325274
  201.  
  202. details: Anatolia_N Kostenki14.SG 0.000109 0.398446
  203. details: Caucasus_Eneolithic Kostenki14.SG -0.001016 -2.669202
  204. details: Geoksyur_EN Kostenki14.SG -0.001653 -6.075085
  205. details: Russia_Khvalynsk_EN Kostenki14.SG 0.001229 3.511526
  206. dscore: Kostenki14.SG f4: -0.000433 Z: -1.881982
  207.  
  208. details: Anatolia_N Russia_Karelia_HG -0.001858 -6.988611
  209. details: Caucasus_Eneolithic Russia_Karelia_HG -0.001201 -2.959772
  210. details: Geoksyur_EN Russia_Karelia_HG -0.001548 -5.236122
  211. details: Russia_Khvalynsk_EN Russia_Karelia_HG 0.009643 25.610377
  212. dscore: Russia_Karelia_HG f4: -0.000045 Z: -0.186790
  213.  
  214. details: Anatolia_N Serbia_Iron_Gates_HG 0.000931 4.456913
  215. details: Caucasus_Eneolithic Serbia_Iron_Gates_HG -0.000942 -2.898945
  216. details: Geoksyur_EN Serbia_Iron_Gates_HG -0.002842 -12.936251
  217. details: Russia_Khvalynsk_EN Serbia_Iron_Gates_HG 0.005301 18.128800
  218. dscore: Serbia_Iron_Gates_HG f4: 0.000183 Z: 0.967119
  219.  
  220. details: Anatolia_N Tyumen_HG -0.002723 -10.670374
  221. details: Caucasus_Eneolithic Tyumen_HG -0.001520 -3.789800
  222. details: Geoksyur_EN Tyumen_HG 0.000169 0.600728
  223. details: Russia_Khvalynsk_EN Tyumen_HG 0.008764 23.476821
  224. dscore: Tyumen_HG f4: -0.000186 Z: -0.798709
  225.  
  226. details: Anatolia_N Onge.DG -0.000364 -1.599066
  227. details: Caucasus_Eneolithic Onge.DG -0.000166 -0.512196
  228. details: Geoksyur_EN Onge.DG 0.000318 1.297708
  229. details: Russia_Khvalynsk_EN Onge.DG 0.001908 6.306148
  230. dscore: Onge.DG f4: 0.000152 Z: 0.737936
  231.  
  232. gendstat: Mbuti.DG Morocco_Iberomaurusian -0.474
  233. gendstat: Mbuti.DG Ganj_Dareh_N 0.582
  234. gendstat: Mbuti.DG PPN 0.085
  235. gendstat: Mbuti.DG Anatolia_Meso -0.088
  236. gendstat: Mbuti.DG Iberia_MN -0.043
  237. gendstat: Mbuti.DG Russia_MA1.SG -0.873
  238. gendstat: Mbuti.DG Georgia_Satsurblia.SG -0.325
  239. gendstat: Mbuti.DG Kostenki14.SG -1.882
  240. gendstat: Mbuti.DG Russia_Karelia_HG -0.187
  241. gendstat: Mbuti.DG Serbia_Iron_Gates_HG 0.967
  242. gendstat: Mbuti.DG Tyumen_HG -0.799
  243. gendstat: Mbuti.DG Onge.DG 0.738
  244. gendstat: Morocco_Iberomaurusian Ganj_Dareh_N 0.945
  245. gendstat: Morocco_Iberomaurusian PPN 0.494
  246. gendstat: Morocco_Iberomaurusian Anatolia_Meso 0.244
  247. gendstat: Morocco_Iberomaurusian Iberia_MN 0.393
  248. gendstat: Morocco_Iberomaurusian Russia_MA1.SG -0.461
  249. gendstat: Morocco_Iberomaurusian Georgia_Satsurblia.SG 0.044
  250. gendstat: Morocco_Iberomaurusian Kostenki14.SG -1.405
  251. gendstat: Morocco_Iberomaurusian Russia_Karelia_HG 0.159
  252. gendstat: Morocco_Iberomaurusian Serbia_Iron_Gates_HG 1.329
  253. gendstat: Morocco_Iberomaurusian Tyumen_HG -0.391
  254. gendstat: Morocco_Iberomaurusian Onge.DG 1.085
  255. gendstat: Ganj_Dareh_N PPN -0.430
  256. gendstat: Ganj_Dareh_N Anatolia_Meso -0.491
  257. gendstat: Ganj_Dareh_N Iberia_MN -0.567
  258. gendstat: Ganj_Dareh_N Russia_MA1.SG -1.253
  259. gendstat: Ganj_Dareh_N Georgia_Satsurblia.SG -0.776
  260. gendstat: Ganj_Dareh_N Kostenki14.SG -2.241
  261. gendstat: Ganj_Dareh_N Russia_Karelia_HG -0.627
  262. gendstat: Ganj_Dareh_N Serbia_Iron_Gates_HG 0.372
  263. gendstat: Ganj_Dareh_N Tyumen_HG -1.191
  264. gendstat: Ganj_Dareh_N Onge.DG 0.202
  265. gendstat: PPN Anatolia_Meso -0.157
  266. gendstat: PPN Iberia_MN -0.133
  267. gendstat: PPN Russia_MA1.SG -0.852
  268. gendstat: PPN Georgia_Satsurblia.SG -0.359
  269. gendstat: PPN Kostenki14.SG -1.785
  270. gendstat: PPN Russia_Karelia_HG -0.236
  271. gendstat: PPN Serbia_Iron_Gates_HG 0.859
  272. gendstat: PPN Tyumen_HG -0.756
  273. gendstat: PPN Onge.DG 0.583
  274. gendstat: Anatolia_Meso Iberia_MN 0.058
  275. gendstat: Anatolia_Meso Russia_MA1.SG -0.592
  276. gendstat: Anatolia_Meso Georgia_Satsurblia.SG -0.173
  277. gendstat: Anatolia_Meso Kostenki14.SG -1.379
  278. gendstat: Anatolia_Meso Russia_Karelia_HG -0.075
  279. gendstat: Anatolia_Meso Serbia_Iron_Gates_HG 0.818
  280. gendstat: Anatolia_Meso Tyumen_HG -0.534
  281. gendstat: Anatolia_Meso Onge.DG 0.627
  282. gendstat: Iberia_MN Russia_MA1.SG -0.791
  283. gendstat: Iberia_MN Georgia_Satsurblia.SG -0.267
  284. gendstat: Iberia_MN Kostenki14.SG -1.771
  285. gendstat: Iberia_MN Russia_Karelia_HG -0.146
  286. gendstat: Iberia_MN Serbia_Iron_Gates_HG 1.125
  287. gendstat: Iberia_MN Tyumen_HG -0.704
  288. gendstat: Iberia_MN Onge.DG 0.727
  289. gendstat: Russia_MA1.SG Georgia_Satsurblia.SG 0.474
  290. gendstat: Russia_MA1.SG Kostenki14.SG -0.875
  291. gendstat: Russia_MA1.SG Russia_Karelia_HG 0.637
  292. gendstat: Russia_MA1.SG Serbia_Iron_Gates_HG 1.782
  293. gendstat: Russia_MA1.SG Tyumen_HG 0.058
  294. gendstat: Russia_MA1.SG Onge.DG 1.444
  295. gendstat: Georgia_Satsurblia.SG Kostenki14.SG -1.302
  296. gendstat: Georgia_Satsurblia.SG Russia_Karelia_HG 0.105
  297. gendstat: Georgia_Satsurblia.SG Serbia_Iron_Gates_HG 1.108
  298. gendstat: Georgia_Satsurblia.SG Tyumen_HG -0.407
  299. gendstat: Georgia_Satsurblia.SG Onge.DG 0.914
  300. gendstat: Kostenki14.SG Russia_Karelia_HG 1.406
  301. gendstat: Kostenki14.SG Serbia_Iron_Gates_HG 2.834
  302. gendstat: Kostenki14.SG Tyumen_HG 0.922
  303. gendstat: Kostenki14.SG Onge.DG 2.383
  304. gendstat: Russia_Karelia_HG Serbia_Iron_Gates_HG 1.085
  305. gendstat: Russia_Karelia_HG Tyumen_HG -0.575
  306. gendstat: Russia_Karelia_HG Onge.DG 0.774
  307. gendstat: Serbia_Iron_Gates_HG Tyumen_HG -1.727
  308. gendstat: Serbia_Iron_Gates_HG Onge.DG -0.151
  309. gendstat: Tyumen_HG Onge.DG 1.340
  310.  
  311. ## end of run
Add Comment
Please, Sign In to add comment
Public Pastes
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!