misnomer001

Areni Armenia_C Pass

Jan 5th, 2020
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  1. ### THE INPUT PARAMETERS
  2. ##PARAMETER NAME: VALUE
  3. allsnps: YES
  4. ## qpAdm version: 810
  5. seed: 1848774845
  6.  
  7. left pops:
  8. Armenia_C
  9. Anatolia_N
  10. Caucasus_Eneolithic
  11. Geoksyur_EN
  12. Russia_Khvalynsk_EN
  13.  
  14. right pops:
  15. Mbuti.DG
  16. Morocco_Iberomaurusian
  17. Ganj_Dareh_N
  18. PPN
  19. Anatolia_Meso
  20. Iberia_MN
  21. Russia_MA1.SG
  22. Georgia_Satsurblia.SG
  23. Kostenki14.SG
  24. Russia_Karelia_HG
  25. Serbia_Iron_Gates_HG
  26. Tyumen_HG
  27. Onge.DG
  28.  
  29. 0 Armenia_C 5
  30. 1 Anatolia_N 22
  31. 2 Caucasus_Eneolithic 3
  32. 3 Geoksyur_EN 21
  33. 4 Russia_Khvalynsk_EN 3
  34. 5 Mbuti.DG 5
  35. 6 Morocco_Iberomaurusian 6
  36. 7 Ganj_Dareh_N 7
  37. 8 PPN 8
  38. 9 Anatolia_Meso 1
  39. 10 Iberia_MN 4
  40. 11 Russia_MA1.SG 1
  41. 12 Georgia_Satsurblia.SG 1
  42. 13 Kostenki14.SG 1
  43. 14 Russia_Karelia_HG 2
  44. 15 Serbia_Iron_Gates_HG 32
  45. 16 Tyumen_HG 2
  46. 17 Onge.DG 2
  47. jackknife block size: 0.050
  48. snps: 1150524 indivs: 126
  49. number of blocks for block jackknife: 552
  50. ## ncols: 1150524
  51. coverage: Armenia_C 1033326
  52. coverage: Anatolia_N 1134099
  53. coverage: Caucasus_Eneolithic 784983
  54. coverage: Geoksyur_EN 1018577
  55. coverage: Russia_Khvalynsk_EN 758497
  56. coverage: Mbuti.DG 1150376
  57. coverage: Morocco_Iberomaurusian 1101342
  58. coverage: Ganj_Dareh_N 1029695
  59. coverage: PPN 835499
  60. coverage: Anatolia_Meso 989345
  61. coverage: Iberia_MN 967760
  62. coverage: Russia_MA1.SG 805960
  63. coverage: Georgia_Satsurblia.SG 801311
  64. coverage: Kostenki14.SG 1048972
  65. coverage: Russia_Karelia_HG 1010733
  66. coverage: Serbia_Iron_Gates_HG 1139259
  67. coverage: Tyumen_HG 807474
  68. coverage: Onge.DG 1120748
  69. dof (jackknife): 466.375
  70. numsnps used: 1150524
  71. codimension 1
  72. f4info:
  73. f4rank: 3 dof: 9 chisq: 14.309 tail: 0.111748783 dofdiff: 11 chisqdiff: -14.309 taildiff: 1
  74. B:
  75. scale 1.000 1.000 1.000
  76. Morocco_Iberomaurusian -0.143 0.720 0.224
  77. Ganj_Dareh_N 0.026 -1.297 -1.959
  78. PPN -0.821 1.197 -0.331
  79. Anatolia_Meso -0.972 1.766 -0.261
  80. Iberia_MN -0.525 1.468 0.223
  81. Russia_MA1.SG 1.273 0.083 -0.224
  82. Georgia_Satsurblia.SG -0.006 -0.520 2.190
  83. Kostenki14.SG 0.260 0.557 0.290
  84. Russia_Karelia_HG 1.978 0.811 1.031
  85. Serbia_Iron_Gates_HG 0.913 1.351 1.244
  86. Tyumen_HG 1.874 0.151 -0.422
  87. Onge.DG 0.375 0.004 -0.405
  88. A:
  89. scale 406.842 646.297 3026.325
  90. Anatolia_N -0.620 1.164 -0.608
  91. Caucasus_Eneolithic -0.204 -0.705 1.697
  92. Geoksyur_EN 0.125 -1.389 -0.825
  93. Russia_Khvalynsk_EN 1.887 0.467 -0.265
  94.  
  95.  
  96. full rank
  97. f4info:
  98. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 14.309 taildiff: 0.111748783
  99. B:
  100. scale 1.000 1.000 1.000 1.000
  101. Morocco_Iberomaurusian -0.149 0.724 0.121 0.481
  102. Ganj_Dareh_N 0.044 -1.288 -1.771 -0.223
  103. PPN -0.833 1.210 -0.419 0.087
  104. Anatolia_Meso -0.994 1.776 -0.409 0.345
  105. Iberia_MN -0.544 1.470 0.086 0.217
  106. Russia_MA1.SG 1.274 0.070 -0.330 0.682
  107. Georgia_Satsurblia.SG 0.008 -0.533 2.458 0.213
  108. Kostenki14.SG 0.257 0.556 0.279 1.894
  109. Russia_Karelia_HG 1.965 0.793 0.798 -0.432
  110. Serbia_Iron_Gates_HG 0.897 1.337 1.005 -2.487
  111. Tyumen_HG 1.871 0.144 -0.655 0.389
  112. Onge.DG 0.375 0.008 -0.439 -0.960
  113. A:
  114. scale 410.085 648.844 3197.424 7221.303
  115. Anatolia_N -0.659 1.112 -0.634 -0.974
  116. Caucasus_Eneolithic -0.215 -0.661 1.579 -1.176
  117. Geoksyur_EN 0.076 -1.445 -0.993 -0.946
  118. Russia_Khvalynsk_EN 1.874 0.488 -0.345 -0.879
  119.  
  120.  
  121. best coefficients: 0.374 0.265 0.225 0.136
  122. Jackknife mean: 0.373641903 0.265127003 0.224641487 0.136589606
  123. std. errors: 0.034 0.082 0.051 0.014
  124.  
  125. error covariance (* 1000000)
  126. 1129 -2498 1320 49
  127. -2498 6729 -3947 -284
  128. 1320 -3947 2592 35
  129. 49 -284 35 200
  130.  
  131.  
  132. summ: Armenia_C 4 0.111749 0.374 0.265 0.225 0.137 1129 -2498 1320 49 6729 -3947 -284 2592 35 200
  133.  
  134. fixed pat wt dof chisq tail prob
  135. 0000 0 9 14.309 0.111749 0.374 0.265 0.225 0.136
  136. 0001 1 10 104.412 7.10805e-18 -0.443 2.540 -1.097 0.000 infeasible
  137. 0010 1 10 29.755 0.000939429 0.257 0.614 -0.000 0.129
  138. 0100 1 10 28.687 0.00139991 0.472 0.000 0.380 0.148
  139. 1000 1 10 85.414 4.3247e-14 0.000 1.276 -0.353 0.077 infeasible
  140. 0011 2 11 73.068 3.17753e-11 0.195 0.805 -0.000 0.000
  141. 0101 2 11 140.907 1.06512e-24 0.513 -0.000 0.487 0.000
  142. 0110 2 11 491.929 0 0.641 0.000 -0.000 0.359
  143. 1001 2 11 73.121 3.10387e-11 -0.000 1.325 -0.325 0.000 infeasible
  144. 1010 2 11 86.831 6.94632e-14 0.000 0.923 -0.000 0.077
  145. 1100 2 11 936.992 0 -0.000 0.000 0.764 0.236
  146. 0111 3 12 1127.468 0 1.000 -0.000 -0.000 0.000
  147. 1011 3 12 96.579 2.59783e-15 0.000 1.000 -0.000 0.000
  148. 1101 3 12 1070.096 0 0.000 -0.000 1.000 0.000
  149. 1110 3 12 1716.756 0 0.000 0.000 -0.000 1.000
  150. best pat: 0000 0.111749 - -
  151. best pat: 0100 0.00139991 chi(nested): 14.378 p-value for nested model: 0.000149534
  152. best pat: 0011 3.17753e-11 not nested
  153. best pat: 1011 2.59783e-15 chi(nested): 23.511 p-value for nested model: 1.24204e-06
  154.  
  155. coeffs: 0.374 0.265 0.225 0.136
  156.  
  157. ## dscore:: f_4(Base, Fit, Rbase, right2)
  158. ## genstat:: f_4(Base, Fit, right1, right2)
  159.  
  160. details: Anatolia_N Morocco_Iberomaurusian 0.001376 7.113216
  161. details: Caucasus_Eneolithic Morocco_Iberomaurusian -0.000683 -2.265746
  162. details: Geoksyur_EN Morocco_Iberomaurusian -0.001745 -7.927006
  163. details: Russia_Khvalynsk_EN Morocco_Iberomaurusian -0.000188 -0.689563
  164. dscore: Morocco_Iberomaurusian f4: -0.000085 Z: -0.474027
  165.  
  166. details: Anatolia_N Ganj_Dareh_N -0.001926 -9.586667
  167. details: Caucasus_Eneolithic Ganj_Dareh_N 0.000486 1.499600
  168. details: Geoksyur_EN Ganj_Dareh_N 0.003445 14.458440
  169. details: Russia_Khvalynsk_EN Ganj_Dareh_N -0.000546 -1.894232
  170. dscore: Ganj_Dareh_N f4: 0.000109 Z: 0.581947
  171.  
  172. details: Anatolia_N PPN 0.003455 16.953778
  173. details: Caucasus_Eneolithic PPN -0.001017 -3.141026
  174. details: Geoksyur_EN PPN -0.002757 -12.050392
  175. details: Russia_Khvalynsk_EN PPN -0.002828 -9.513912
  176. dscore: PPN f4: 0.000016 Z: 0.084695
  177.  
  178. details: Anatolia_N Anatolia_Meso 0.004670 16.986259
  179. details: Caucasus_Eneolithic Anatolia_Meso -0.001520 -3.654265
  180. details: Geoksyur_EN Anatolia_Meso -0.004112 -14.412145
  181. details: Russia_Khvalynsk_EN Anatolia_Meso -0.003225 -9.184161
  182. dscore: Anatolia_Meso f4: -0.000022 Z: -0.088410
  183.  
  184. details: Anatolia_N Iberia_MN 0.003344 16.354174
  185. details: Caucasus_Eneolithic Iberia_MN -0.001108 -3.391824
  186. details: Geoksyur_EN Iberia_MN -0.003437 -15.598706
  187. details: Russia_Khvalynsk_EN Iberia_MN -0.001402 -4.975484
  188. dscore: Iberia_MN f4: -0.000008 Z: -0.042904
  189.  
  190. details: Anatolia_N Russia_MA1.SG -0.002019 -7.541225
  191. details: Caucasus_Eneolithic Russia_MA1.SG -0.001000 -2.698901
  192. details: Geoksyur_EN Russia_MA1.SG 0.000075 0.268079
  193. details: Russia_Khvalynsk_EN Russia_MA1.SG 0.005874 16.505953
  194. dscore: Russia_MA1.SG f4: -0.000201 Z: -0.873311
  195.  
  196. details: Anatolia_N Georgia_Satsurblia.SG -0.001458 -5.454934
  197. details: Caucasus_Eneolithic Georgia_Satsurblia.SG 0.001796 4.979738
  198. details: Geoksyur_EN Georgia_Satsurblia.SG 0.000369 1.320425
  199. details: Russia_Khvalynsk_EN Georgia_Satsurblia.SG -0.000640 -1.776939
  200. dscore: Georgia_Satsurblia.SG f4: -0.000074 Z: -0.325274
  201.  
  202. details: Anatolia_N Kostenki14.SG 0.000109 0.398446
  203. details: Caucasus_Eneolithic Kostenki14.SG -0.001016 -2.669202
  204. details: Geoksyur_EN Kostenki14.SG -0.001653 -6.075085
  205. details: Russia_Khvalynsk_EN Kostenki14.SG 0.001229 3.511526
  206. dscore: Kostenki14.SG f4: -0.000433 Z: -1.881982
  207.  
  208. details: Anatolia_N Russia_Karelia_HG -0.001858 -6.988611
  209. details: Caucasus_Eneolithic Russia_Karelia_HG -0.001201 -2.959772
  210. details: Geoksyur_EN Russia_Karelia_HG -0.001548 -5.236122
  211. details: Russia_Khvalynsk_EN Russia_Karelia_HG 0.009643 25.610377
  212. dscore: Russia_Karelia_HG f4: -0.000045 Z: -0.186790
  213.  
  214. details: Anatolia_N Serbia_Iron_Gates_HG 0.000931 4.456913
  215. details: Caucasus_Eneolithic Serbia_Iron_Gates_HG -0.000942 -2.898945
  216. details: Geoksyur_EN Serbia_Iron_Gates_HG -0.002842 -12.936251
  217. details: Russia_Khvalynsk_EN Serbia_Iron_Gates_HG 0.005301 18.128800
  218. dscore: Serbia_Iron_Gates_HG f4: 0.000183 Z: 0.967119
  219.  
  220. details: Anatolia_N Tyumen_HG -0.002723 -10.670374
  221. details: Caucasus_Eneolithic Tyumen_HG -0.001520 -3.789800
  222. details: Geoksyur_EN Tyumen_HG 0.000169 0.600728
  223. details: Russia_Khvalynsk_EN Tyumen_HG 0.008764 23.476821
  224. dscore: Tyumen_HG f4: -0.000186 Z: -0.798709
  225.  
  226. details: Anatolia_N Onge.DG -0.000364 -1.599066
  227. details: Caucasus_Eneolithic Onge.DG -0.000166 -0.512196
  228. details: Geoksyur_EN Onge.DG 0.000318 1.297708
  229. details: Russia_Khvalynsk_EN Onge.DG 0.001908 6.306148
  230. dscore: Onge.DG f4: 0.000152 Z: 0.737936
  231.  
  232. gendstat: Mbuti.DG Morocco_Iberomaurusian -0.474
  233. gendstat: Mbuti.DG Ganj_Dareh_N 0.582
  234. gendstat: Mbuti.DG PPN 0.085
  235. gendstat: Mbuti.DG Anatolia_Meso -0.088
  236. gendstat: Mbuti.DG Iberia_MN -0.043
  237. gendstat: Mbuti.DG Russia_MA1.SG -0.873
  238. gendstat: Mbuti.DG Georgia_Satsurblia.SG -0.325
  239. gendstat: Mbuti.DG Kostenki14.SG -1.882
  240. gendstat: Mbuti.DG Russia_Karelia_HG -0.187
  241. gendstat: Mbuti.DG Serbia_Iron_Gates_HG 0.967
  242. gendstat: Mbuti.DG Tyumen_HG -0.799
  243. gendstat: Mbuti.DG Onge.DG 0.738
  244. gendstat: Morocco_Iberomaurusian Ganj_Dareh_N 0.945
  245. gendstat: Morocco_Iberomaurusian PPN 0.494
  246. gendstat: Morocco_Iberomaurusian Anatolia_Meso 0.244
  247. gendstat: Morocco_Iberomaurusian Iberia_MN 0.393
  248. gendstat: Morocco_Iberomaurusian Russia_MA1.SG -0.461
  249. gendstat: Morocco_Iberomaurusian Georgia_Satsurblia.SG 0.044
  250. gendstat: Morocco_Iberomaurusian Kostenki14.SG -1.405
  251. gendstat: Morocco_Iberomaurusian Russia_Karelia_HG 0.159
  252. gendstat: Morocco_Iberomaurusian Serbia_Iron_Gates_HG 1.329
  253. gendstat: Morocco_Iberomaurusian Tyumen_HG -0.391
  254. gendstat: Morocco_Iberomaurusian Onge.DG 1.085
  255. gendstat: Ganj_Dareh_N PPN -0.430
  256. gendstat: Ganj_Dareh_N Anatolia_Meso -0.491
  257. gendstat: Ganj_Dareh_N Iberia_MN -0.567
  258. gendstat: Ganj_Dareh_N Russia_MA1.SG -1.253
  259. gendstat: Ganj_Dareh_N Georgia_Satsurblia.SG -0.776
  260. gendstat: Ganj_Dareh_N Kostenki14.SG -2.241
  261. gendstat: Ganj_Dareh_N Russia_Karelia_HG -0.627
  262. gendstat: Ganj_Dareh_N Serbia_Iron_Gates_HG 0.372
  263. gendstat: Ganj_Dareh_N Tyumen_HG -1.191
  264. gendstat: Ganj_Dareh_N Onge.DG 0.202
  265. gendstat: PPN Anatolia_Meso -0.157
  266. gendstat: PPN Iberia_MN -0.133
  267. gendstat: PPN Russia_MA1.SG -0.852
  268. gendstat: PPN Georgia_Satsurblia.SG -0.359
  269. gendstat: PPN Kostenki14.SG -1.785
  270. gendstat: PPN Russia_Karelia_HG -0.236
  271. gendstat: PPN Serbia_Iron_Gates_HG 0.859
  272. gendstat: PPN Tyumen_HG -0.756
  273. gendstat: PPN Onge.DG 0.583
  274. gendstat: Anatolia_Meso Iberia_MN 0.058
  275. gendstat: Anatolia_Meso Russia_MA1.SG -0.592
  276. gendstat: Anatolia_Meso Georgia_Satsurblia.SG -0.173
  277. gendstat: Anatolia_Meso Kostenki14.SG -1.379
  278. gendstat: Anatolia_Meso Russia_Karelia_HG -0.075
  279. gendstat: Anatolia_Meso Serbia_Iron_Gates_HG 0.818
  280. gendstat: Anatolia_Meso Tyumen_HG -0.534
  281. gendstat: Anatolia_Meso Onge.DG 0.627
  282. gendstat: Iberia_MN Russia_MA1.SG -0.791
  283. gendstat: Iberia_MN Georgia_Satsurblia.SG -0.267
  284. gendstat: Iberia_MN Kostenki14.SG -1.771
  285. gendstat: Iberia_MN Russia_Karelia_HG -0.146
  286. gendstat: Iberia_MN Serbia_Iron_Gates_HG 1.125
  287. gendstat: Iberia_MN Tyumen_HG -0.704
  288. gendstat: Iberia_MN Onge.DG 0.727
  289. gendstat: Russia_MA1.SG Georgia_Satsurblia.SG 0.474
  290. gendstat: Russia_MA1.SG Kostenki14.SG -0.875
  291. gendstat: Russia_MA1.SG Russia_Karelia_HG 0.637
  292. gendstat: Russia_MA1.SG Serbia_Iron_Gates_HG 1.782
  293. gendstat: Russia_MA1.SG Tyumen_HG 0.058
  294. gendstat: Russia_MA1.SG Onge.DG 1.444
  295. gendstat: Georgia_Satsurblia.SG Kostenki14.SG -1.302
  296. gendstat: Georgia_Satsurblia.SG Russia_Karelia_HG 0.105
  297. gendstat: Georgia_Satsurblia.SG Serbia_Iron_Gates_HG 1.108
  298. gendstat: Georgia_Satsurblia.SG Tyumen_HG -0.407
  299. gendstat: Georgia_Satsurblia.SG Onge.DG 0.914
  300. gendstat: Kostenki14.SG Russia_Karelia_HG 1.406
  301. gendstat: Kostenki14.SG Serbia_Iron_Gates_HG 2.834
  302. gendstat: Kostenki14.SG Tyumen_HG 0.922
  303. gendstat: Kostenki14.SG Onge.DG 2.383
  304. gendstat: Russia_Karelia_HG Serbia_Iron_Gates_HG 1.085
  305. gendstat: Russia_Karelia_HG Tyumen_HG -0.575
  306. gendstat: Russia_Karelia_HG Onge.DG 0.774
  307. gendstat: Serbia_Iron_Gates_HG Tyumen_HG -1.727
  308. gendstat: Serbia_Iron_Gates_HG Onge.DG -0.151
  309. gendstat: Tyumen_HG Onge.DG 1.340
  310.  
  311. ## end of run
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