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  1.  
  2. R version 3.5.1 (2018-07-02) -- "Feather Spray"
  3. Copyright (C) 2018 The R Foundation for Statistical Computing
  4. Platform: x86_64-apple-darwin13.4.0 (64-bit)
  5.  
  6. R is free software and comes with ABSOLUTELY NO WARRANTY.
  7. You are welcome to redistribute it under certain conditions.
  8. Type 'license()' or 'licence()' for distribution details.
  9.  
  10.   Natural language support but running in an English locale
  11.  
  12. R is a collaborative project with many contributors.
  13. Type 'contributors()' for more information and
  14. 'citation()' on how to cite R or R packages in publications.
  15.  
  16. Type 'demo()' for some demos, 'help()' for on-line help, or
  17. 'help.start()' for an HTML browser interface to help.
  18. Type 'q()' to quit R.
  19.  
  20. > install.packages("devtools")
  21. also installing the dependencies ‘fs’, ‘git2r’, ‘usethis’
  22.  
  23. trying URL 'https://cran.rstudio.com/src/contrib/fs_1.2.6.tar.gz'
  24. Content type 'application/x-gzip' length 799325 bytes (780 KB)
  25. ==================================================
  26. downloaded 780 KB
  27.  
  28. trying URL 'https://cran.rstudio.com/src/contrib/git2r_0.24.0.tar.gz'
  29. Content type 'application/x-gzip' length 1151420 bytes (1.1 MB)
  30. ==================================================
  31. downloaded 1.1 MB
  32.  
  33. trying URL 'https://cran.rstudio.com/src/contrib/usethis_1.4.0.tar.gz'
  34. Content type 'application/x-gzip' length 325703 bytes (318 KB)
  35. ==================================================
  36. downloaded 318 KB
  37.  
  38. trying URL 'https://cran.rstudio.com/src/contrib/devtools_2.0.1.tar.gz'
  39. Content type 'application/x-gzip' length 388953 bytes (379 KB)
  40. ==================================================
  41. downloaded 379 KB
  42.  
  43. * installing *source* package ‘fs’ ...
  44. ** package ‘fs’ successfully unpacked and MD5 sums checked
  45. ** libs
  46. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/envs/renv/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/envs/renv/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/envs/renv/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/envs/renv/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c error.cc -o error.o
  47. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/envs/renv/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/envs/renv/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/envs/renv/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/envs/renv/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c dir.cc -o dir.o
  48. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/envs/renv/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/envs/renv/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/envs/renv/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/envs/renv/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c utils.cc -o utils.o
  49. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/envs/renv/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/envs/renv/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/envs/renv/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/envs/renv/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c link.cc -o link.o
  50. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/envs/renv/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/envs/renv/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/envs/renv/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/envs/renv/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c path.cc -o path.o
  51. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/envs/renv/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/envs/renv/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/envs/renv/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/envs/renv/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c file.cc -o file.o
  52. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/envs/renv/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/envs/renv/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/envs/renv/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/envs/renv/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c fs.cc -o fs.o
  53. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/envs/renv/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/envs/renv/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/envs/renv/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/envs/renv/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c id.cc -o id.o
  54. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/envs/renv/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/envs/renv/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/envs/renv/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/envs/renv/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c unix/getmode.cc -o unix/getmode.o
  55. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/envs/renv/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/envs/renv/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/envs/renv/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/envs/renv/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c RcppExports.cpp -o RcppExports.o
  56. cp -p -f libuv/m4/lt_obsolete.m4 libuv/m4/lt~obsolete.m4
  57. (cd libuv \
  58.     && touch aclocal.m4 \
  59.     && touch -r aclocal.m4 configure Makefile.in \
  60. && CC="x86_64-apple-darwin13.4.0-clang" CFLAGS="-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -I/Users/[user]/anaconda3/envs/renv/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -fPIC " AR="x86_64-apple-darwin13.4.0-ar" RANLIB="x86_64-apple-darwin13.4.0-ranlib" LDFLAGS="-Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,/Users/[user]/anaconda3/envs/renv/lib -L/Users/[user]/anaconda3/envs/renv/lib" ./configure --quiet)
  61. configure: error: in `/private/var/folders/y6/ntnz7dyd2w3f5qvlrpxvpw6m0000gn/T/RtmpvsXLnJ/R.INSTALL46766d527b7d/fs/src/libuv':
  62. configure: error: C compiler cannot create executables
  63. See `config.log' for more details
  64. make: *** [Makevars:32: libuv/Makefile] Error 77
  65. ERROR: compilation failed for package ‘fs’
  66. * removing ‘/Users/[user]/anaconda3/envs/renv/lib/R/library/fs’
  67. Warning in install.packages :
  68.   installation of package ‘fs’ had non-zero exit status
  69. * installing *source* package ‘git2r’ ...
  70. ** package ‘git2r’ successfully unpacked and MD5 sums checked
  71. checking build system type... x86_64-apple-darwin18.2.0
  72. checking host system type... x86_64-apple-darwin18.2.0
  73. checking for gcc... x86_64-apple-darwin13.4.0-clang
  74. checking whether the C compiler works... no
  75. configure: error: in `/private/var/folders/y6/ntnz7dyd2w3f5qvlrpxvpw6m0000gn/T/RtmpsPwFY0/R.INSTALL477a3f52c772/git2r':
  76. configure: error: C compiler cannot create executables
  77. See `config.log' for more details
  78. ERROR: configuration failed for package ‘git2r’
  79. * removing ‘/Users/[user]/anaconda3/envs/renv/lib/R/library/git2r’
  80. Warning in install.packages :
  81.   installation of package ‘git2r’ had non-zero exit status
  82. ERROR: dependencies ‘fs’, ‘git2r’ are not available for package ‘usethis’
  83. * removing ‘/Users/[user]/anaconda3/envs/renv/lib/R/library/usethis’
  84. Warning in install.packages :
  85.   installation of package ‘usethis’ had non-zero exit status
  86. ERROR: dependencies ‘git2r’, ‘usethis’ are not available for package ‘devtools’
  87. * removing ‘/Users/[user]/anaconda3/envs/renv/lib/R/library/devtools’
  88. Warning in install.packages :
  89.   installation of package ‘devtools’ had non-zero exit status
  90.  
  91. The downloaded source packages are in
  92.     ‘/private/var/folders/y6/ntnz7dyd2w3f5qvlrpxvpw6m0000gn/T/RtmpxWxnTx/downloaded_packages’
  93. Updating HTML index of packages in '.Library'
  94. Making 'packages.html' ... done
  95. > install.packages("git2r")
  96. trying URL 'https://cran.rstudio.com/src/contrib/git2r_0.24.0.tar.gz'
  97. Content type 'application/x-gzip' length 1151420 bytes (1.1 MB)
  98. ==================================================
  99. downloaded 1.1 MB
  100.  
  101. * installing *source* package ‘git2r’ ...
  102. ** package ‘git2r’ successfully unpacked and MD5 sums checked
  103. checking build system type... x86_64-apple-darwin18.2.0
  104. checking host system type... x86_64-apple-darwin18.2.0
  105. checking for gcc... x86_64-apple-darwin13.4.0-clang
  106. checking whether the C compiler works... no
  107. configure: error: in `/private/var/folders/y6/ntnz7dyd2w3f5qvlrpxvpw6m0000gn/T/RtmppWO1uZ/R.INSTALL484b11b460a4/git2r':
  108. configure: error: C compiler cannot create executables
  109. See `config.log' for more details
  110. ERROR: configuration failed for package ‘git2r’
  111. * removing ‘/Users/[user]/anaconda3/envs/renv/lib/R/library/git2r’
  112. Warning in install.packages :
  113.   installation of package ‘git2r’ had non-zero exit status
  114.  
  115. The downloaded source packages are in
  116.     ‘/private/var/folders/y6/ntnz7dyd2w3f5qvlrpxvpw6m0000gn/T/RtmpxWxnTx/downloaded_packages’
  117. Updating HTML index of packages in '.Library'
  118. Making 'packages.html' ... done
  119. > install.packages("ps")
  120. trying URL 'https://cran.rstudio.com/src/contrib/ps_1.3.0.tar.gz'
  121. Content type 'application/x-gzip' length 261887 bytes (255 KB)
  122. ==================================================
  123. downloaded 255 KB
  124.  
  125. * installing *source* package ‘ps’ ...
  126. ** package ‘ps’ successfully unpacked and MD5 sums checked
  127. ** libs
  128. x86_64-apple-darwin13.4.0-clang -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -I/Users/[user]/anaconda3/envs/renv/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -Wall px.c -o px
  129. ld: warning: ignoring file /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/lib/libSystem.tbd, file was built for unsupported file format ( 0x2D 0x2D 0x2D 0x20 0x21 0x74 0x61 0x70 0x69 0x2D 0x74 0x62 0x64 0x2D 0x76 0x33 ) which is not the architecture being linked (x86_64): /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/lib/libSystem.tbd
  130. Undefined symbols for architecture x86_64:
  131.   "___error", referenced from:
  132.       _echo_from_fd in px-ac601c.o
  133.   "___stack_chk_fail", referenced from:
  134.       _cat2 in px-ac601c.o
  135.       _cat in px-ac601c.o
  136.       _echo_from_fd in px-ac601c.o
  137.       _main in px-ac601c.o
  138.   "___stack_chk_guard", referenced from:
  139.       _cat2 in px-ac601c.o
  140.       _cat in px-ac601c.o
  141.       _echo_from_fd in px-ac601c.o
  142.       _main in px-ac601c.o
  143.   "___stderrp", referenced from:
  144.       _usage in px-ac601c.o
  145.       _cat2 in px-ac601c.o
  146.       _cat in px-ac601c.o
  147.       _write_to_fd in px-ac601c.o
  148.       _echo_from_fd in px-ac601c.o
  149.       _main in px-ac601c.o
  150.   "___stdoutp", referenced from:
  151.       _echo_from_fd in px-ac601c.o
  152.       _main in px-ac601c.o
  153.   "_close", referenced from:
  154.       _cat in px-ac601c.o
  155.   "_exit", referenced from:
  156.       _cat2 in px-ac601c.o
  157.       _cat in px-ac601c.o
  158.   "_fflush", referenced from:
  159.       _echo_from_fd in px-ac601c.o
  160.       _main in px-ac601c.o
  161.   "_fprintf", referenced from:
  162.       _cat2 in px-ac601c.o
  163.       _cat in px-ac601c.o
  164.       _write_to_fd in px-ac601c.o
  165.       _echo_from_fd in px-ac601c.o
  166.       _main in px-ac601c.o
  167.   "_fputs", referenced from:
  168.       _main in px-ac601c.o
  169.   "_fwrite", referenced from:
  170.       _usage in px-ac601c.o
  171.       _main in px-ac601c.o
  172.   "_getenv", referenced from:
  173.       _main in px-ac601c.o
  174.   "_open", referenced from:
  175.       _cat in px-ac601c.o
  176.   "_printf", referenced from:
  177.       _main in px-ac601c.o
  178.   "_puts", referenced from:
  179.       _main in px-ac601c.o
  180.   "_read", referenced from:
  181.       _cat2 in px-ac601c.o
  182.       _cat in px-ac601c.o
  183.       _echo_from_fd in px-ac601c.o
  184.   "_sleep", referenced from:
  185.       _main in px-ac601c.o
  186.   "_sscanf", referenced from:
  187.       _main in px-ac601c.o
  188.   "_strcmp", referenced from:
  189.       _main in px-ac601c.o
  190.   "_strerror", referenced from:
  191.       _echo_from_fd in px-ac601c.o
  192.   "_strlen", referenced from:
  193.       _write_to_fd in px-ac601c.o
  194.       _echo_from_fd in px-ac601c.o
  195.       _main in px-ac601c.o
  196.   "_usleep", referenced from:
  197.       _main in px-ac601c.o
  198.   "_write", referenced from:
  199.       _cat2 in px-ac601c.o
  200.       _cat in px-ac601c.o
  201.       _write_to_fd in px-ac601c.o
  202.       _echo_from_fd in px-ac601c.o
  203.       _main in px-ac601c.o
  204.      (maybe you meant: _write_to_fd)
  205. ld: symbol(s) not found for architecture x86_64
  206. clang-4.0: error: linker command failed with exit code 1 (use -v to see invocation)
  207. make: *** [Makevars:11: px] Error 1
  208. ERROR: compilation failed for package ‘ps’
  209. * removing ‘/Users/[user]/anaconda3/envs/renv/lib/R/library/ps’
  210. Warning in install.packages :
  211.   installation of package ‘ps’ had non-zero exit status
  212.  
  213. The downloaded source packages are in
  214.     ‘/private/var/folders/y6/ntnz7dyd2w3f5qvlrpxvpw6m0000gn/T/RtmpxWxnTx/downloaded_packages’
  215. Updating HTML index of packages in '.Library'
  216. Making 'packages.html' ... done
  217. > install.packages("fs")
  218. trying URL 'https://cran.rstudio.com/src/contrib/fs_1.2.6.tar.gz'
  219. Content type 'application/x-gzip' length 799325 bytes (780 KB)
  220. ==================================================
  221. downloaded 780 KB
  222.  
  223. * installing *source* package ‘fs’ ...
  224. ** package ‘fs’ successfully unpacked and MD5 sums checked
  225. ** libs
  226. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/envs/renv/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/envs/renv/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/envs/renv/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/envs/renv/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c error.cc -o error.o
  227. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/envs/renv/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/envs/renv/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/envs/renv/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/envs/renv/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c dir.cc -o dir.o
  228. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/envs/renv/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/envs/renv/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/envs/renv/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/envs/renv/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c utils.cc -o utils.o
  229. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/envs/renv/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/envs/renv/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/envs/renv/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/envs/renv/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c link.cc -o link.o
  230. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/envs/renv/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/envs/renv/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/envs/renv/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/envs/renv/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c path.cc -o path.o
  231. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/envs/renv/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/envs/renv/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/envs/renv/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/envs/renv/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c file.cc -o file.o
  232. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/envs/renv/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/envs/renv/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/envs/renv/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/envs/renv/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c fs.cc -o fs.o
  233. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/envs/renv/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/envs/renv/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/envs/renv/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/envs/renv/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c id.cc -o id.o
  234. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/envs/renv/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/envs/renv/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/envs/renv/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/envs/renv/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c unix/getmode.cc -o unix/getmode.o
  235. x86_64-apple-darwin13.4.0-clang++  -I"/Users/[user]/anaconda3/envs/renv/lib/R/include" -DNDEBUG -I./libuv/include -I. -I"/Users/[user]/anaconda3/envs/renv/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/[user]/anaconda3/envs/renv/include   -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden  -fmessage-length=0 -I/Users/[user]/anaconda3/envs/renv/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -c RcppExports.cpp -o RcppExports.o
  236. cp -p -f libuv/m4/lt_obsolete.m4 libuv/m4/lt~obsolete.m4
  237. (cd libuv \
  238.     && touch aclocal.m4 \
  239.     && touch -r aclocal.m4 configure Makefile.in \
  240. && CC="x86_64-apple-darwin13.4.0-clang" CFLAGS="-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -I/Users/[user]/anaconda3/envs/renv/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix  -fPIC " AR="x86_64-apple-darwin13.4.0-ar" RANLIB="x86_64-apple-darwin13.4.0-ranlib" LDFLAGS="-Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,/Users/[user]/anaconda3/envs/renv/lib -L/Users/[user]/anaconda3/envs/renv/lib" ./configure --quiet)
  241. configure: error: in `/private/var/folders/y6/ntnz7dyd2w3f5qvlrpxvpw6m0000gn/T/RtmpfJtEaE/R.INSTALL491f714651b6/fs/src/libuv':
  242. configure: error: C compiler cannot create executables
  243. See `config.log' for more details
  244. make: *** [Makevars:32: libuv/Makefile] Error 77
  245. ERROR: compilation failed for package ‘fs’
  246. * removing ‘/Users/[user]/anaconda3/envs/renv/lib/R/library/fs’
  247. Warning in install.packages :
  248.   installation of package ‘fs’ had non-zero exit status
  249.  
  250. The downloaded source packages are in
  251.     ‘/private/var/folders/y6/ntnz7dyd2w3f5qvlrpxvpw6m0000gn/T/RtmpxWxnTx/downloaded_packages’
  252. Updating HTML index of packages in '.Library'
  253. Making 'packages.html' ... done
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