API tools faq
paste
misnomer001

yamnaya samara fail

misnomer001
Feb 7th, 2020
67
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 13.54 KB | None | 0 0
raw download clone embed print report
  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1629645278
  4. read 1073741824 bytes
  5. read 1339052118 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. Russia_Yamnaya_Samara
  11. EEHG
  12. Ukraine_Globular_Amphora
  13. Georgia_Kotias.SG
  14.  
  15. right pops:
  16. Russia_MA1_HG
  17. Italy_Villabruna
  18. Russia_Kostenki14
  19. Belgium_GoyetQ116
  20. Pinarbasi
  21. Iberia_ElMiron
  22. Czech_Vestonice16
  23. Morocco_Iberomaurusian
  24. Russia_Shamanka_EN.SG
  25. Georgia_Satsurblia.SG
  26. Ganj_Dareh_N
  27. Onge.DG
  28. PPN
  29.  
  30. 0 Russia_Yamnaya_Samara 10
  31. 1 EEHG 5
  32. 2 Ukraine_Globular_Amphora 3
  33. 3 Georgia_Kotias.SG 1
  34. 4 Russia_MA1_HG 1
  35. 5 Italy_Villabruna 1
  36. 6 Russia_Kostenki14 1
  37. 7 Belgium_GoyetQ116 1
  38. 8 Pinarbasi 1
  39. 9 Iberia_ElMiron 1
  40. 10 Czech_Vestonice16 1
  41. 11 Morocco_Iberomaurusian 6
  42. 12 Russia_Shamanka_EN.SG 10
  43. 13 Georgia_Satsurblia.SG 1
  44. 14 Ganj_Dareh_N 8
  45. 15 Onge.DG 2
  46. 16 PPN 8
  47. jackknife block size: 0.050
  48. snps: 1150469 indivs: 61
  49. number of blocks for block jackknife: 552
  50. ## ncols: 1150469
  51. coverage: Russia_Yamnaya_Samara 1123907
  52. coverage: EEHG 1052093
  53. coverage: Ukraine_Globular_Amphora 1036892
  54. coverage: Georgia_Kotias.SG 1149097
  55. coverage: Russia_MA1_HG 805960
  56. coverage: Italy_Villabruna 883779
  57. coverage: Russia_Kostenki14 1068326
  58. coverage: Belgium_GoyetQ116 765579
  59. coverage: Pinarbasi 892975
  60. coverage: Iberia_ElMiron 626974
  61. coverage: Czech_Vestonice16 732091
  62. coverage: Morocco_Iberomaurusian 1101342
  63. coverage: Russia_Shamanka_EN.SG 1149998
  64. coverage: Georgia_Satsurblia.SG 801311
  65. coverage: Ganj_Dareh_N 1057358
  66. coverage: Onge.DG 1120748
  67. coverage: PPN 835499
  68. dof (jackknife): 469.850
  69. numsnps used: 1150469
  70. codimension 1
  71. f4info:
  72. f4rank: 2 dof: 10 chisq: 60.495 tail: 2.92083146e-09 dofdiff: 12 chisqdiff: -60.495 taildiff: 1
  73. B:
  74. scale 1.000 1.000
  75. Italy_Villabruna 0.813 1.497
  76. Russia_Kostenki14 0.860 0.355
  77. Belgium_GoyetQ116 0.700 0.431
  78. Pinarbasi 1.339 0.884
  79. Iberia_ElMiron 0.705 0.855
  80. Czech_Vestonice16 0.762 0.611
  81. Morocco_Iberomaurusian 1.251 0.215
  82. Russia_Shamanka_EN.SG 0.665 -0.339
  83. Georgia_Satsurblia.SG 1.075 -2.263
  84. Ganj_Dareh_N 1.150 -1.274
  85. Onge.DG 0.875 -0.385
  86. PPN 1.410 0.711
  87. A:
  88. scale 251.023 600.827
  89. EEHG -0.918 0.589
  90. Ukraine_Globular_Amphora 1.216 1.134
  91. Georgia_Kotias.SG 0.824 -1.169
  92.  
  93.  
  94. full rank
  95. f4info:
  96. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 60.495 taildiff: 2.92083146e-09
  97. B:
  98. scale 279.392 187.424 250.319
  99. Italy_Villabruna -0.326 1.291 0.048
  100. Russia_Kostenki14 -0.766 0.913 0.568
  101. Belgium_GoyetQ116 -0.575 0.813 0.450
  102. Pinarbasi -1.032 1.534 0.730
  103. Iberia_ElMiron -0.431 0.975 0.272
  104. Czech_Vestonice16 -0.555 0.924 0.366
  105. Morocco_Iberomaurusian -1.202 1.178 0.950
  106. Russia_Shamanka_EN.SG -0.701 0.498 0.805
  107. Georgia_Satsurblia.SG -1.510 0.262 2.374
  108. Ganj_Dareh_N -1.622 0.534 1.439
  109. Onge.DG -1.048 0.614 0.862
  110. PPN -1.213 1.522 0.856
  111. A:
  112. scale 1.732 1.732 1.732
  113. EEHG 1.732 0.000 0.000
  114. Ukraine_Globular_Amphora 0.000 1.732 0.000
  115. Georgia_Kotias.SG 0.000 0.000 1.732
  116.  
  117.  
  118. best coefficients: 0.501 0.125 0.374
  119. Jackknife mean: 0.501630596 0.125094961 0.373274443
  120. std. errors: 0.020 0.018 0.019
  121.  
  122. error covariance (* 1,000,000)
  123. 387 -184 -203
  124. -184 342 -158
  125. -203 -158 361
  126.  
  127.  
  128. summ: Russia_Yamnaya_Samara 3 0.000000 0.502 0.125 0.373 387 -184 -203 342 -158 ...
  129. 361
  130.  
  131. fixed pat wt dof chisq tail prob
  132. 000 0 10 60.495 2.92083e-09 0.501 0.125 0.374
  133. 001 1 11 551.568 0 0.803 0.197 0.000
  134. 010 1 11 102.258 6.37066e-17 0.569 0.000 0.431
  135. 100 1 11 456.447 0 0.000 0.163 0.837
  136. 011 2 12 613.210 0 1.000 0.000 0.000
  137. 101 2 12 1241.461 0 0.000 1.000 0.000
  138. 110 2 12 474.267 0 0.000 0.000 1.000
  139. best pat: 000 2.92083e-09 - -
  140. best pat: 010 6.37066e-17 chi(nested): 41.763 p-value for nested model: 1.03015e-10
  141. best pat: 110 6.59489e-94 chi(nested): 372.009 p-value for nested model: 6.8365e-83
  142.  
  143. coeffs: 0.501 0.125 0.374
  144.  
  145. ## dscore:: f_4(Base, Fit, Rbase, right2)
  146. ## genstat:: f_4(Base, Fit, right1, right2)
  147.  
  148. details: EEHG Italy_Villabruna -0.001168 -3.301362
  149. details: Ukraine_Globular_Amphora Italy_Villabruna 0.006890 19.283431
  150. details: Georgia_Kotias.SG Italy_Villabruna 0.000190 0.422276
  151. dscore: Italy_Villabruna f4: 0.000347 Z: 1.327796
  152.  
  153. details: EEHG Russia_Kostenki14 -0.002742 -6.879011
  154. details: Ukraine_Globular_Amphora Russia_Kostenki14 0.004870 12.982524
  155. details: Georgia_Kotias.SG Russia_Kostenki14 0.002269 4.721408
  156. dscore: Russia_Kostenki14 f4: 0.000082 Z: 0.286897
  157.  
  158. details: EEHG Belgium_GoyetQ116 -0.002056 -6.179060
  159. details: Ukraine_Globular_Amphora Belgium_GoyetQ116 0.004337 13.407816
  160. details: Georgia_Kotias.SG Belgium_GoyetQ116 0.001796 4.235972
  161. dscore: Belgium_GoyetQ116 f4: 0.000183 Z: 0.760394
  162.  
  163. details: EEHG Pinarbasi -0.003694 -10.772480
  164. details: Ukraine_Globular_Amphora Pinarbasi 0.008186 21.369029
  165. details: Georgia_Kotias.SG Pinarbasi 0.002917 6.258378
  166. dscore: Pinarbasi f4: 0.000262 Z: 0.960813
  167.  
  168. details: EEHG Iberia_ElMiron -0.001543 -4.861959
  169. details: Ukraine_Globular_Amphora Iberia_ElMiron 0.005201 17.127446
  170. details: Georgia_Kotias.SG Iberia_ElMiron 0.001086 2.863153
  171. dscore: Iberia_ElMiron f4: 0.000282 Z: 1.201296
  172.  
  173. details: EEHG Czech_Vestonice16 -0.001987 -6.355018
  174. details: Ukraine_Globular_Amphora Czech_Vestonice16 0.004930 15.891396
  175. details: Georgia_Kotias.SG Czech_Vestonice16 0.001461 3.651913
  176. dscore: Czech_Vestonice16 f4: 0.000167 Z: 0.701288
  177.  
  178. details: EEHG Morocco_Iberomaurusian -0.004302 -12.506532
  179. details: Ukraine_Globular_Amphora Morocco_Iberomaurusian 0.006284 17.808303
  180. details: Georgia_Kotias.SG Morocco_Iberomaurusian 0.003797 8.308186
  181. dscore: Morocco_Iberomaurusian f4: 0.000049 Z: 0.189866
  182.  
  183. details: EEHG Russia_Shamanka_EN.SG -0.002508 -8.340367
  184. details: Ukraine_Globular_Amphora Russia_Shamanka_EN.SG 0.002656 8.835654
  185. details: Georgia_Kotias.SG Russia_Shamanka_EN.SG 0.003216 7.537803
  186. dscore: Russia_Shamanka_EN.SG f4: 0.000277 Z: 1.179475
  187.  
  188. details: EEHG Georgia_Satsurblia.SG -0.005404 -16.769200
  189. details: Ukraine_Globular_Amphora Georgia_Satsurblia.SG 0.001396 4.301416
  190. details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.009482 18.575924
  191. dscore: Georgia_Satsurblia.SG f4: 0.001012 Z: 3.863830
  192.  
  193. details: EEHG Ganj_Dareh_N -0.005807 -18.070796
  194. details: Ukraine_Globular_Amphora Ganj_Dareh_N 0.002850 8.709022
  195. details: Georgia_Kotias.SG Ganj_Dareh_N 0.005749 13.110120
  196. dscore: Ganj_Dareh_N f4: -0.000404 Z: -1.645490
  197.  
  198. details: EEHG Onge.DG -0.003751 -11.495573
  199. details: Ukraine_Globular_Amphora Onge.DG 0.003274 9.828740
  200. details: Georgia_Kotias.SG Onge.DG 0.003445 7.256178
  201. dscore: Onge.DG f4: -0.000183 Z: -0.713963
  202.  
  203. details: EEHG PPN -0.004342 -14.314832
  204. details: Ukraine_Globular_Amphora PPN 0.008119 26.056957
  205. details: Georgia_Kotias.SG PPN 0.003418 8.907460
  206. dscore: PPN f4: 0.000117 Z: 0.504360
  207.  
  208. gendstat: Russia_MA1_HG Italy_Villabruna 1.328
  209. gendstat: Russia_MA1_HG Russia_Kostenki14 0.287
  210. gendstat: Russia_MA1_HG Belgium_GoyetQ116 0.760
  211. gendstat: Russia_MA1_HG Pinarbasi 0.961
  212. gendstat: Russia_MA1_HG Iberia_ElMiron 1.201
  213. gendstat: Russia_MA1_HG Czech_Vestonice16 0.701
  214. gendstat: Russia_MA1_HG Morocco_Iberomaurusian 0.190
  215. gendstat: Russia_MA1_HG Russia_Shamanka_EN.SG 1.179
  216. gendstat: Russia_MA1_HG Georgia_Satsurblia.SG 3.864
  217. gendstat: Russia_MA1_HG Ganj_Dareh_N -1.645
  218. gendstat: Russia_MA1_HG Onge.DG -0.714
  219. gendstat: Russia_MA1_HG PPN 0.504
  220. gendstat: Italy_Villabruna Russia_Kostenki14 -1.020
  221. gendstat: Italy_Villabruna Belgium_GoyetQ116 -0.652
  222. gendstat: Italy_Villabruna Pinarbasi -0.323
  223. gendstat: Italy_Villabruna Iberia_ElMiron -0.283
  224. gendstat: Italy_Villabruna Czech_Vestonice16 -0.724
  225. gendstat: Italy_Villabruna Morocco_Iberomaurusian -1.234
  226. gendstat: Italy_Villabruna Russia_Shamanka_EN.SG -0.303
  227. gendstat: Italy_Villabruna Georgia_Satsurblia.SG 2.393
  228. gendstat: Italy_Villabruna Ganj_Dareh_N -3.364
  229. gendstat: Italy_Villabruna Onge.DG -2.055
  230. gendstat: Italy_Villabruna PPN -1.010
  231. gendstat: Russia_Kostenki14 Belgium_GoyetQ116 0.375
  232. gendstat: Russia_Kostenki14 Pinarbasi 0.626
  233. gendstat: Russia_Kostenki14 Iberia_ElMiron 0.769
  234. gendstat: Russia_Kostenki14 Czech_Vestonice16 0.333
  235. gendstat: Russia_Kostenki14 Morocco_Iberomaurusian -0.139
  236. gendstat: Russia_Kostenki14 Russia_Shamanka_EN.SG 0.886
  237. gendstat: Russia_Kostenki14 Georgia_Satsurblia.SG 3.284
  238. gendstat: Russia_Kostenki14 Ganj_Dareh_N -2.013
  239. gendstat: Russia_Kostenki14 Onge.DG -1.082
  240. gendstat: Russia_Kostenki14 PPN 0.140
  241. gendstat: Belgium_GoyetQ116 Pinarbasi 0.290
  242. gendstat: Belgium_GoyetQ116 Iberia_ElMiron 0.429
  243. gendstat: Belgium_GoyetQ116 Czech_Vestonice16 -0.070
  244. gendstat: Belgium_GoyetQ116 Morocco_Iberomaurusian -0.547
  245. gendstat: Belgium_GoyetQ116 Russia_Shamanka_EN.SG 0.420
  246. gendstat: Belgium_GoyetQ116 Georgia_Satsurblia.SG 3.012
  247. gendstat: Belgium_GoyetQ116 Ganj_Dareh_N -2.523
  248. gendstat: Belgium_GoyetQ116 Onge.DG -1.455
  249. gendstat: Belgium_GoyetQ116 PPN -0.287
  250. gendstat: Pinarbasi Iberia_ElMiron 0.080
  251. gendstat: Pinarbasi Czech_Vestonice16 -0.373
  252. gendstat: Pinarbasi Morocco_Iberomaurusian -0.851
  253. gendstat: Pinarbasi Russia_Shamanka_EN.SG 0.065
  254. gendstat: Pinarbasi Georgia_Satsurblia.SG 2.740
  255. gendstat: Pinarbasi Ganj_Dareh_N -2.853
  256. gendstat: Pinarbasi Onge.DG -1.752
  257. gendstat: Pinarbasi PPN -0.668
  258. gendstat: Iberia_ElMiron Czech_Vestonice16 -0.511
  259. gendstat: Iberia_ElMiron Morocco_Iberomaurusian -1.008
  260. gendstat: Iberia_ElMiron Russia_Shamanka_EN.SG -0.023
  261. gendstat: Iberia_ElMiron Georgia_Satsurblia.SG 2.609
  262. gendstat: Iberia_ElMiron Ganj_Dareh_N -3.067
  263. gendstat: Iberia_ElMiron Onge.DG -1.878
  264. gendstat: Iberia_ElMiron PPN -0.747
  265. gendstat: Czech_Vestonice16 Morocco_Iberomaurusian -0.499
  266. gendstat: Czech_Vestonice16 Russia_Shamanka_EN.SG 0.507
  267. gendstat: Czech_Vestonice16 Georgia_Satsurblia.SG 2.997
  268. gendstat: Czech_Vestonice16 Ganj_Dareh_N -2.541
  269. gendstat: Czech_Vestonice16 Onge.DG -1.399
  270. gendstat: Czech_Vestonice16 PPN -0.233
  271. gendstat: Morocco_Iberomaurusian Russia_Shamanka_EN.SG 1.228
  272. gendstat: Morocco_Iberomaurusian Georgia_Satsurblia.SG 3.996
  273. gendstat: Morocco_Iberomaurusian Ganj_Dareh_N -2.287
  274. gendstat: Morocco_Iberomaurusian Onge.DG -1.075
  275. gendstat: Morocco_Iberomaurusian PPN 0.348
  276. gendstat: Russia_Shamanka_EN.SG Georgia_Satsurblia.SG 3.074
  277. gendstat: Russia_Shamanka_EN.SG Ganj_Dareh_N -3.778
  278. gendstat: Russia_Shamanka_EN.SG Onge.DG -2.647
  279. gendstat: Russia_Shamanka_EN.SG PPN -0.856
  280. gendstat: Georgia_Satsurblia.SG Ganj_Dareh_N -6.372
  281. gendstat: Georgia_Satsurblia.SG Onge.DG -4.831
  282. gendstat: Georgia_Satsurblia.SG PPN -3.683
  283. gendstat: Ganj_Dareh_N Onge.DG 1.107
  284. gendstat: Ganj_Dareh_N PPN 2.879
  285. gendstat: Onge.DG PPN 1.375
  286.  
  287. ##end of qpAdm: 235.027 seconds cpu 1385.824 Mbytes in use
Add Comment
Please, Sign In to add comment
Public Pastes
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!