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  1. NOTE: Picked up JDK_JAVA_OPTIONS: --add-opens=java.base/java.lang=ALL-UNNAMED --add-opens=java.base/java.io=ALL-UNNAMED --add-opens=java.rmi/sun.rmi.transport=ALL-UNNAMED
  2. OpenJDK 64-Bit Server VM warning: Option UseConcMarkSweepGC was deprecated in version 9.0 and will likely be removed in a future release.
  3. 30-Oct-2019 20:53:34.726 WARNING [main] org.apache.catalina.startup.ClassLoaderFactory.validateFile Problem with directory [/var/lib/tomcat8/common/classes], exists: [false], isDirectory: [false], canRead: [false]
  4. 30-Oct-2019 20:53:34.733 WARNING [main] org.apache.catalina.startup.ClassLoaderFactory.validateFile Problem with directory [/var/lib/tomcat8/common], exists: [false], isDirectory: [false], canRead: [false]
  5. 30-Oct-2019 20:53:34.733 WARNING [main] org.apache.catalina.startup.ClassLoaderFactory.validateFile Problem with directory [/usr/share/tomcat8/common/classes], exists: [false], isDirectory: [false], canRead: [false]
  6. 30-Oct-2019 20:53:34.733 WARNING [main] org.apache.catalina.startup.ClassLoaderFactory.validateFile Problem with directory [/usr/share/tomcat8/common], exists: [false], isDirectory: [false], canRead: [false]
  7. 30-Oct-2019 20:53:34.739 WARNING [main] org.apache.catalina.startup.ClassLoaderFactory.validateFile Problem with directory [/var/lib/tomcat8/server/classes], exists: [false], isDirectory: [false], canRead: [false]
  8. 30-Oct-2019 20:53:34.740 WARNING [main] org.apache.catalina.startup.ClassLoaderFactory.validateFile Problem with directory [/var/lib/tomcat8/server], exists: [false], isDirectory: [false], canRead: [false]
  9. 30-Oct-2019 20:53:34.740 WARNING [main] org.apache.catalina.startup.ClassLoaderFactory.validateFile Problem with directory [/usr/share/tomcat8/server/classes], exists: [false], isDirectory: [false], canRead: [false]
  10. 30-Oct-2019 20:53:34.740 WARNING [main] org.apache.catalina.startup.ClassLoaderFactory.validateFile Problem with directory [/usr/share/tomcat8/server], exists: [false], isDirectory: [false], canRead: [false]
  11. 30-Oct-2019 20:53:34.743 WARNING [main] org.apache.catalina.startup.ClassLoaderFactory.validateFile Problem with directory [/var/lib/tomcat8/shared/classes], exists: [false], isDirectory: [false], canRead: [false]
  12. 30-Oct-2019 20:53:34.744 WARNING [main] org.apache.catalina.startup.ClassLoaderFactory.validateFile Problem with directory [/var/lib/tomcat8/shared], exists: [false], isDirectory: [false], canRead: [false]
  13. 30-Oct-2019 20:53:34.744 WARNING [main] org.apache.catalina.startup.ClassLoaderFactory.validateFile Problem with directory [/usr/share/tomcat8/shared/classes], exists: [false], isDirectory: [false], canRead: [false]
  14. 30-Oct-2019 20:53:34.750 WARNING [main] org.apache.catalina.startup.ClassLoaderFactory.validateFile Problem with directory [/usr/share/tomcat8/shared], exists: [false], isDirectory: [false], canRead: [false]
  15. 30-Oct-2019 20:53:36.005 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version: Apache Tomcat/8.5.39 (Ubuntu)
  16. 30-Oct-2019 20:53:36.005 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built: Sep 9 2019 19:47:51 UTC
  17. 30-Oct-2019 20:53:36.005 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server number: 8.5.39.0
  18. 30-Oct-2019 20:53:36.006 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name: Linux
  19. 30-Oct-2019 20:53:36.006 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version: 4.15.0-1052-aws
  20. 30-Oct-2019 20:53:36.006 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture: amd64
  21. 30-Oct-2019 20:53:36.006 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home: /usr/lib/jvm/java-11-openjdk-amd64
  22. 30-Oct-2019 20:53:36.006 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version: 11.0.4+11-post-Ubuntu-1ubuntu218.04.3
  23. 30-Oct-2019 20:53:36.006 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: Ubuntu
  24. 30-Oct-2019 20:53:36.006 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: /var/lib/tomcat8
  25. 30-Oct-2019 20:53:36.006 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: /usr/share/tomcat8
  26. 30-Oct-2019 20:53:36.007 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.lang=ALL-UNNAMED
  27. 30-Oct-2019 20:53:36.007 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.io=ALL-UNNAMED
  28. 30-Oct-2019 20:53:36.007 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.rmi/sun.rmi.transport=ALL-UNNAMED
  29. 30-Oct-2019 20:53:36.007 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=/var/lib/tomcat8/conf/logging.properties
  30. 30-Oct-2019 20:53:36.007 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
  31. 30-Oct-2019 20:53:36.007 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.awt.headless=true
  32. 30-Oct-2019 20:53:36.007 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:+UseConcMarkSweepGC
  33. 30-Oct-2019 20:53:36.007 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djdk.tls.ephemeralDHKeySize=2048
  34. 30-Oct-2019 20:53:36.008 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.protocol.handler.pkgs=org.apache.catalina.webresources
  35. 30-Oct-2019 20:53:36.008 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dorg.apache.catalina.security.SecurityListener.UMASK=0027
  36. 30-Oct-2019 20:53:36.010 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dignore.endorsed.dirs=
  37. 30-Oct-2019 20:53:36.010 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=/var/lib/tomcat8
  38. 30-Oct-2019 20:53:36.010 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=/usr/share/tomcat8
  39. 30-Oct-2019 20:53:36.010 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=/tmp/tomcat8-tomcat8-tmp
  40. 30-Oct-2019 20:53:36.010 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent Loaded APR based Apache Tomcat Native library [1.2.21] using APR version [1.6.3].
  41. 30-Oct-2019 20:53:36.010 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent APR capabilities: IPv6 [true], sendfile [true], accept filters [false], random [true].
  42. 30-Oct-2019 20:53:36.015 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent APR/OpenSSL configuration: useAprConnector [false], useOpenSSL [true]
  43. 30-Oct-2019 20:53:36.023 INFO [main] org.apache.catalina.core.AprLifecycleListener.initializeSSL OpenSSL successfully initialized [OpenSSL 1.1.1 11 Sep 2018]
  44. 30-Oct-2019 20:53:36.124 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8080"]
  45. 30-Oct-2019 20:53:36.167 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read
  46. 30-Oct-2019 20:53:36.198 INFO [main] org.apache.catalina.startup.Catalina.load Initialization processed in 1308 ms
  47. 30-Oct-2019 20:53:36.340 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service [Catalina]
  48. 30-Oct-2019 20:53:36.340 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet Engine: Apache Tomcat/8.5.39 (Ubuntu)
  49. 30-Oct-2019 20:53:36.365 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDescriptor Deploying configuration descriptor [/etc/tomcat8/Catalina/localhost/host-manager.xml]
  50. 30-Oct-2019 20:53:38.184 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  51. 30-Oct-2019 20:53:38.272 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDescriptor Deployment of configuration descriptor [/etc/tomcat8/Catalina/localhost/host-manager.xml] has finished in [1,906] ms
  52. 30-Oct-2019 20:53:38.276 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDescriptor Deploying configuration descriptor [/etc/tomcat8/Catalina/localhost/manager.xml]
  53. 30-Oct-2019 20:53:39.009 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  54. 30-Oct-2019 20:53:39.013 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDescriptor Deployment of configuration descriptor [/etc/tomcat8/Catalina/localhost/manager.xml] has finished in [737] ms
  55. 30-Oct-2019 20:53:39.015 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/var/lib/tomcat8/webapps/openmrs]
  56. 30-Oct-2019 20:53:39.021 WARNING [localhost-startStop-1] org.apache.catalina.startup.SetContextPropertiesRule.begin [SetContextPropertiesRule]{Context} Setting property 'antiJARLocking' to 'true' did not find a matching property.
  57. 30-Oct-2019 20:53:44.620 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  58. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2078) |2019-10-30 20:53:45,032| Unable to find a runtime properties file at /var/lib/tomcat8/openmrs-runtime.properties
  59. WARN - OpenmrsUtil.getApplicationDataDirectory(1044) |2019-10-30 20:53:45,062| Unable to write to users home dir, fallback to: /var/lib
  60. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2078) |2019-10-30 20:53:45,062| Unable to find a runtime properties file at /var/lib/tomcat8/openmrs-runtime.properties
  61. WARN - OpenmrsUtil.getApplicationDataDirectory(1044) |2019-10-30 20:53:45,063| Unable to write to users home dir, fallback to: /var/lib
  62. INFO - Listener.contextInitialized(173) |2019-10-30 20:53:45,063| Using runtime properties file: /var/lib/OpenMRS/openmrs-runtime.properties
  63. Wed Oct 30 20:53:45 UTC 2019 WARN: Establishing SSL connection without server's identity verification is not recommended. According to MySQL 5.5.45+, 5.6.26+ and 5.7.6+ requirements SSL connection must be established by default if explicit option isn't set. For compliance with existing applications not using SSL the verifyServerCertificate property is set to 'false'. You need either to explicitly disable SSL by setting useSSL=false, or set useSSL=true and provide truststore for server certificate verification.
  64. INFO 10/30/19, 8:53 PM:liquibase: Reading from `liquibasechangelog`
  65. WARNING 10/30/19, 8:53 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  66. WARNING 10/30/19, 8:53 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  67. WARNING 10/30/19, 8:53 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  68. Wed Oct 30 20:53:48 UTC 2019 WARN: Establishing SSL connection without server's identity verification is not recommended. According to MySQL 5.5.45+, 5.6.26+ and 5.7.6+ requirements SSL connection must be established by default if explicit option isn't set. For compliance with existing applications not using SSL the verifyServerCertificate property is set to 'false'. You need either to explicitly disable SSL by setting useSSL=false, or set useSSL=true and provide truststore for server certificate verification.
  69. WARNING: An illegal reflective access operation has occurred
  70. WARNING: Illegal reflective access by com.thoughtworks.xstream.core.util.Fields (file:/var/lib/tomcat8/webapps/openmrs/WEB-INF/lib/xstream-1.4.11.1.jar) to field java.util.TreeMap.comparator
  71. WARNING: Please consider reporting this to the maintainers of com.thoughtworks.xstream.core.util.Fields
  72. WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
  73. WARNING: All illegal access operations will be denied in a future release
  74. INFO - EhCacheManagerFactoryBean.afterPropertiesSet(129) |2019-10-30 20:53:52,142| Initializing EhCache CacheManager
  75. WARN - OpenmrsUtil.getApplicationDataDirectory(1044) |2019-10-30 20:53:53,883| Unable to write to users home dir, fallback to: /var/lib
  76. Wed Oct 30 20:53:56 UTC 2019 WARN: Establishing SSL connection without server's identity verification is not recommended. According to MySQL 5.5.45+, 5.6.26+ and 5.7.6+ requirements SSL connection must be established by default if explicit option isn't set. For compliance with existing applications not using SSL the verifyServerCertificate property is set to 'false'. You need either to explicitly disable SSL by setting useSSL=false, or set useSSL=true and provide truststore for server certificate verification.
  77. WARN - SimpleUrlHandlerMapping.registerHandlers(115) |2019-10-30 20:54:04,087| Neither 'urlMap' nor 'mappings' set on SimpleUrlHandlerMapping
  78. WARN - Listener.loadBundledModules(500) |2019-10-30 20:54:04,116| Bundled module folder doesn't exist: /var/lib/tomcat8/webapps/openmrs/WEB-INF/bundledModules
  79. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2078) |2019-10-30 20:54:04,117| Unable to find a runtime properties file at /var/lib/tomcat8/openmrs-runtime.properties
  80. WARN - OpenmrsUtil.getApplicationDataDirectory(1044) |2019-10-30 20:54:04,117| Unable to write to users home dir, fallback to: /var/lib
  81. Wed Oct 30 20:54:04 UTC 2019 WARN: Establishing SSL connection without server's identity verification is not recommended. According to MySQL 5.5.45+, 5.6.26+ and 5.7.6+ requirements SSL connection must be established by default if explicit option isn't set. For compliance with existing applications not using SSL the verifyServerCertificate property is set to 'false'. You need either to explicitly disable SSL by setting useSSL=false, or set useSSL=true and provide truststore for server certificate verification.
  82. INFO 10/30/19, 8:54 PM:liquibase: Reading from `liquibasechangelog`
  83. WARNING 10/30/19, 8:54 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  84. WARNING 10/30/19, 8:54 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  85. WARNING 10/30/19, 8:54 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  86. Wed Oct 30 20:54:06 UTC 2019 WARN: Establishing SSL connection without server's identity verification is not recommended. According to MySQL 5.5.45+, 5.6.26+ and 5.7.6+ requirements SSL connection must be established by default if explicit option isn't set. For compliance with existing applications not using SSL the verifyServerCertificate property is set to 'false'. You need either to explicitly disable SSL by setting useSSL=false, or set useSSL=true and provide truststore for server certificate verification.
  87. WARN - OpenmrsUtil.getApplicationDataDirectory(1044) |2019-10-30 20:54:06,545| Unable to write to users home dir, fallback to: /var/lib
  88. WARN - OpenmrsUtil.getApplicationDataDirectory(1044) |2019-10-30 20:54:07,486| Unable to write to users home dir, fallback to: /var/lib
  89. WARN - OpenmrsUtil.getApplicationDataDirectory(1044) |2019-10-30 20:54:07,589| Unable to write to users home dir, fallback to: /var/lib
  90. INFO - LoggingAdvice.invoke(116) |2019-10-30 20:54:07,869| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: legacyui.started value: true,
  91. INFO - LoggingAdvice.invoke(156) |2019-10-30 20:54:07,915| Exiting method saveGlobalProperty
  92. INFO - LoggingAdvice.invoke(116) |2019-10-30 20:54:07,931| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: legacyui.mandatory value: false,
  93. INFO - LoggingAdvice.invoke(156) |2019-10-30 20:54:07,940| Exiting method saveGlobalProperty
  94. INFO - LoggingAdvice.invoke(116) |2019-10-30 20:54:08,175| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: webservices.rest.started value: true,
  95. INFO - LoggingAdvice.invoke(156) |2019-10-30 20:54:08,193| Exiting method saveGlobalProperty
  96. INFO - LoggingAdvice.invoke(116) |2019-10-30 20:54:08,196| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: webservices.rest.mandatory value: false,
  97. INFO - LoggingAdvice.invoke(156) |2019-10-30 20:54:08,203| Exiting method saveGlobalProperty
  98. Wed Oct 30 20:54:09 UTC 2019 WARN: Establishing SSL connection without server's identity verification is not recommended. According to MySQL 5.5.45+, 5.6.26+ and 5.7.6+ requirements SSL connection must be established by default if explicit option isn't set. For compliance with existing applications not using SSL the verifyServerCertificate property is set to 'false'. You need either to explicitly disable SSL by setting useSSL=false, or set useSSL=true and provide truststore for server certificate verification.
  99. INFO 10/30/19, 8:54 PM:liquibase: liquibase.xml is using schema version 1.9 rather than version 2.0
  100. INFO 10/30/19, 8:54 PM:liquibase: Reading from `liquibasechangelog`
  101. INFO 10/30/19, 8:54 PM:liquibase: Successfully acquired change log lock
  102. INFO 10/30/19, 8:54 PM:liquibase: liquibase.xml is using schema version 1.9 rather than version 2.0
  103. INFO 10/30/19, 8:54 PM:liquibase: Successfully released change log lock
  104. INFO - LoggingAdvice.invoke(116) |2019-10-30 20:54:09,323| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: fhir.started value: true,
  105. INFO - LoggingAdvice.invoke(156) |2019-10-30 20:54:09,332| Exiting method saveGlobalProperty
  106. INFO - LoggingAdvice.invoke(116) |2019-10-30 20:54:09,338| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: fhir.mandatory value: false,
  107. INFO - LoggingAdvice.invoke(156) |2019-10-30 20:54:09,343| Exiting method saveGlobalProperty
  108. WARN - WebModuleUtil.startModule(205) |2019-10-30 20:54:09,438| Unable to copy files from module fhir to the web layer
  109. java.io.FileNotFoundException: /var/lib/tomcat8/webapps/openmrs/WEB-INF/view/module/fhir/template/localHeader.jsp (Permission denied)
  110. at java.base/java.io.FileOutputStream.open0(Native Method)
  111. at java.base/java.io.FileOutputStream.open(FileOutputStream.java:298)
  112. at java.base/java.io.FileOutputStream.<init>(FileOutputStream.java:237)
  113. at org.openmrs.module.web.WebModuleUtil.startModule(WebModuleUtil.java:191)
  114. at org.openmrs.web.Listener.performWebStartOfModules(Listener.java:621)
  115. at org.openmrs.web.Listener.performWebStartOfModules(Listener.java:612)
  116. at org.openmrs.web.Listener.startOpenmrs(Listener.java:251)
  117. at org.openmrs.web.WebDaemon$1.run(WebDaemon.java:42)
  118. WARN - WebModuleUtil.startModule(205) |2019-10-30 20:54:09,443| Unable to copy files from module webservices.rest to the web layer
  119. java.io.FileNotFoundException: /var/lib/tomcat8/webapps/openmrs/WEB-INF/view/module/webservices/rest/localHeader.jsp (Permission denied)
  120. at java.base/java.io.FileOutputStream.open0(Native Method)
  121. at java.base/java.io.FileOutputStream.open(FileOutputStream.java:298)
  122. at java.base/java.io.FileOutputStream.<init>(FileOutputStream.java:237)
  123. at org.openmrs.module.web.WebModuleUtil.startModule(WebModuleUtil.java:191)
  124. at org.openmrs.web.Listener.performWebStartOfModules(Listener.java:621)
  125. at org.openmrs.web.Listener.performWebStartOfModules(Listener.java:612)
  126. at org.openmrs.web.Listener.startOpenmrs(Listener.java:251)
  127. at org.openmrs.web.WebDaemon$1.run(WebDaemon.java:42)
  128. WARN - WebModuleUtil.startModule(205) |2019-10-30 20:54:09,448| Unable to copy files from module legacyui to the web layer
  129. java.io.FileNotFoundException: /var/lib/tomcat8/webapps/openmrs/WEB-INF/view/module/legacyui/template/footerMinimal.jsp (Permission denied)
  130. at java.base/java.io.FileOutputStream.open0(Native Method)
  131. at java.base/java.io.FileOutputStream.open(FileOutputStream.java:298)
  132. at java.base/java.io.FileOutputStream.<init>(FileOutputStream.java:237)
  133. at org.openmrs.module.web.WebModuleUtil.startModule(WebModuleUtil.java:191)
  134. at org.openmrs.web.Listener.performWebStartOfModules(Listener.java:621)
  135. at org.openmrs.web.Listener.performWebStartOfModules(Listener.java:612)
  136. at org.openmrs.web.Listener.startOpenmrs(Listener.java:251)
  137. at org.openmrs.web.WebDaemon$1.run(WebDaemon.java:42)
  138. INFO - LoggingAdvice.invoke(116) |2019-10-30 20:54:09,549| In method SchedulerService.saveToMemento. Arguments:
  139. INFO - LoggingAdvice.invoke(156) |2019-10-30 20:54:09,580| Exiting method saveToMemento
  140. INFO - EhCacheManagerFactoryBean.destroy(181) |2019-10-30 20:54:09,660| Shutting down EhCache CacheManager
  141. INFO - ServiceContext.startRefreshingContext(832) |2019-10-30 20:54:09,661| Refreshing Context
  142. INFO - EhCacheManagerFactoryBean.afterPropertiesSet(129) |2019-10-30 20:54:13,115| Initializing EhCache CacheManager
  143. WARN - OpenmrsUtil.getApplicationDataDirectory(1044) |2019-10-30 20:54:13,204| Unable to write to users home dir, fallback to: /var/lib
  144. Wed Oct 30 20:54:14 UTC 2019 WARN: Establishing SSL connection without server's identity verification is not recommended. According to MySQL 5.5.45+, 5.6.26+ and 5.7.6+ requirements SSL connection must be established by default if explicit option isn't set. For compliance with existing applications not using SSL the verifyServerCertificate property is set to 'false'. You need either to explicitly disable SSL by setting useSSL=false, or set useSSL=true and provide truststore for server certificate verification.
  145. ERROR - CopyLegacyUiContentToWebInf.setServletContext(99) |2019-10-30 20:54:19,276| Failed to copy legacy ui files
  146. java.io.IOException: Destination '/var/lib/tomcat8/webapps/openmrs/errorhandler.jsp' exists but is read-only
  147. at org.apache.commons.io.FileUtils.copyFile(FileUtils.java:1086)
  148. at org.apache.commons.io.FileUtils.copyFile(FileUtils.java:1040)
  149. at org.openmrs.web.CopyLegacyUiContentToWebInf.setServletContext(CopyLegacyUiContentToWebInf.java:44)
  150. at org.springframework.web.context.support.ServletContextAwareProcessor.postProcessBeforeInitialization(ServletContextAwareProcessor.java:103)
  151. at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:408)
  152. at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1558)
  153. at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:539)
  154. at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476)
  155. at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:303)
  156. at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
  157. at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:299)
  158. at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:194)
  159. at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:762)
  160. at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:757)
  161. at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:480)
  162. at org.openmrs.module.ModuleUtil.refreshApplicationContext(ModuleUtil.java:888)
  163. at org.openmrs.module.web.WebModuleUtil.refreshWAC(WebModuleUtil.java:847)
  164. at org.openmrs.web.Listener.performWebStartOfModules(Listener.java:632)
  165. at org.openmrs.web.Listener.performWebStartOfModules(Listener.java:612)
  166. at org.openmrs.web.Listener.startOpenmrs(Listener.java:251)
  167. at org.openmrs.web.WebDaemon$1.run(WebDaemon.java:42)
  168. WARN - SimpleUrlHandlerMapping.registerHandlers(115) |2019-10-30 20:54:19,329| Neither 'urlMap' nor 'mappings' set on SimpleUrlHandlerMapping
  169. WARN - SimpleUrlHandlerMapping.registerHandlers(115) |2019-10-30 20:54:19,615| Neither 'urlMap' nor 'mappings' set on SimpleUrlHandlerMapping
  170. INFO - ServiceContext.doneRefreshingContext(843) |2019-10-30 20:54:19,619| Done refreshing Context
  171. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2078) |2019-10-30 20:54:25,286| Unable to find a runtime properties file at /var/lib/tomcat8/openmrs-runtime.properties
  172. WARN - OpenmrsUtil.getApplicationDataDirectory(1044) |2019-10-30 20:54:25,286| Unable to write to users home dir, fallback to: /var/lib
  173. 30-Oct-2019 20:54:25.356 SEVERE [localhost-startStop-1] org.apache.catalina.session.StandardManager.startInternal Exception loading sessions from persistent storage
  174. java.lang.ClassCastException: class java.io.ObjectStreamClass cannot be cast to class java.lang.String (java.io.ObjectStreamClass and java.lang.String are in module java.base of loader 'bootstrap')
  175. at java.base/java.io.ObjectInputStream.readTypeString(ObjectInputStream.java:1671)
  176. at java.base/java.io.ObjectStreamClass.readNonProxy(ObjectStreamClass.java:793)
  177. at java.base/java.io.ObjectInputStream.readClassDescriptor(ObjectInputStream.java:902)
  178. at java.base/java.io.ObjectInputStream.readNonProxyDesc(ObjectInputStream.java:1875)
  179. at java.base/java.io.ObjectInputStream.readClassDesc(ObjectInputStream.java:1772)
  180. at java.base/java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2060)
  181. at java.base/java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1594)
  182. at java.base/java.io.ObjectInputStream.readObject(ObjectInputStream.java:430)
  183. at org.apache.catalina.session.StandardSession.doReadObject(StandardSession.java:1611)
  184. at org.apache.catalina.session.StandardSession.readObjectData(StandardSession.java:1077)
  185. at org.apache.catalina.session.StandardManager.doLoad(StandardManager.java:217)
  186. at org.apache.catalina.session.StandardManager.load(StandardManager.java:161)
  187. at org.apache.catalina.session.StandardManager.startInternal(StandardManager.java:351)
  188. at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
  189. at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5253)
  190. at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
  191. at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:754)
  192. at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:730)
  193. at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:734)
  194. at org.apache.catalina.startup.HostConfig.deployDirectory(HostConfig.java:1135)
  195. at org.apache.catalina.startup.HostConfig$DeployDirectory.run(HostConfig.java:1870)
  196. at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
  197. at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
  198. at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
  199. at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
  200. at java.base/java.lang.Thread.run(Thread.java:834)
  201.  
  202. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2078) |2019-10-30 20:54:25,525| Unable to find a runtime properties file at /var/lib/tomcat8/openmrs-runtime.properties
  203. WARN - OpenmrsUtil.getApplicationDataDirectory(1044) |2019-10-30 20:54:25,526| Unable to write to users home dir, fallback to: /var/lib
  204. Wed Oct 30 20:54:25 UTC 2019 WARN: Establishing SSL connection without server's identity verification is not recommended. According to MySQL 5.5.45+, 5.6.26+ and 5.7.6+ requirements SSL connection must be established by default if explicit option isn't set. For compliance with existing applications not using SSL the verifyServerCertificate property is set to 'false'. You need either to explicitly disable SSL by setting useSSL=false, or set useSSL=true and provide truststore for server certificate verification.
  205. 30-Oct-2019 20:54:25.551 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/var/lib/tomcat8/webapps/openmrs] has finished in [46,537] ms
  206. 30-Oct-2019 20:54:25.552 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/var/lib/tomcat8/webapps/ROOT]
  207. 30-Oct-2019 20:54:26.261 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  208. 30-Oct-2019 20:54:26.265 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/var/lib/tomcat8/webapps/ROOT] has finished in [712] ms
  209. 30-Oct-2019 20:54:26.274 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-8080"]
  210. 30-Oct-2019 20:54:26.316 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in 50117 ms
  211. 30-Oct-2019 20:55:06.456 INFO [Thread-84] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler ["http-nio-8080"]
  212. 30-Oct-2019 20:55:06.465 INFO [Thread-84] org.apache.catalina.core.StandardService.stopInternal Stopping service [Catalina]
  213. INFO - HibernateContextDAO.showUsageStatistics(414) |2019-10-30 20:55:06,600| QUERY: [CRITERIA] select this_.task_config_id as task_con1_90_0_, this_.uuid as uuid2_90_0_, this_.name as name3_90_0_, this_.description as descript4_90_0_, this_.schedulable_class as schedula5_90_0_, this_.repeat_interval as repeat_i6_90_0_, this_.start_time as start_ti7_90_0_, this_.start_time_pattern as start_ti8_90_0_, this_.last_execution_time as last_exe9_90_0_, this_.start_on_startup as start_o10_90_0_, this_.started as started11_90_0_, this_.created_by as created12_90_0_, this_.changed_by as changed13_90_0_, this_.date_created as date_cr14_90_0_, this_.date_changed as date_ch15_90_0_ from scheduler_task_config this_
  214. INFO - HibernateContextDAO.showUsageStatistics(416) |2019-10-30 20:55:06,601| Cache Hit Count : 0
  215. INFO - HibernateContextDAO.showUsageStatistics(417) |2019-10-30 20:55:06,601| Cache Miss Count: 0
  216. INFO - HibernateContextDAO.showUsageStatistics(418) |2019-10-30 20:55:06,601| Cache Put Count : 0
  217. INFO - HibernateContextDAO.showUsageStatistics(419) |2019-10-30 20:55:06,601| Execution Count : 2
  218. INFO - HibernateContextDAO.showUsageStatistics(420) |2019-10-30 20:55:06,601| Average time : 4
  219. INFO - HibernateContextDAO.showUsageStatistics(421) |2019-10-30 20:55:06,602| Row Count : 2
  220. 30-Oct-2019 20:55:06.692 WARNING [localhost-startStop-2] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [FileWatchdog] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  221. java.base@11.0.4/java.lang.Thread.sleep(Native Method)
  222. org.apache.log4j.helpers.FileWatchdog.run(FileWatchdog.java:104)
  223. 30-Oct-2019 20:55:06.695 WARNING [localhost-startStop-2] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  224. java.base@11.0.4/java.lang.Object.wait(Native Method)
  225. java.base@11.0.4/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:155)
  226. com.mysql.jdbc.AbandonedConnectionCleanupThread.run(AbandonedConnectionCleanupThread.java:64)
  227. java.base@11.0.4/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
  228. java.base@11.0.4/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
  229. java.base@11.0.4/java.lang.Thread.run(Thread.java:834)
  230. 30-Oct-2019 20:55:06.704 INFO [Thread-84] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler ["http-nio-8080"]
  231. 30-Oct-2019 20:55:06.710 INFO [Thread-84] org.apache.coyote.AbstractProtocol.destroy Destroying ProtocolHandler ["http-nio-8080"]
  232. NOTE: Picked up JDK_JAVA_OPTIONS: --add-opens=java.base/java.lang=ALL-UNNAMED --add-opens=java.base/java.io=ALL-UNNAMED --add-opens=java.rmi/sun.rmi.transport=ALL-UNNAMED
  233. OpenJDK 64-Bit Server VM warning: Option UseConcMarkSweepGC was deprecated in version 9.0 and will likely be removed in a future release.
  234. 30-Oct-2019 20:55:07.223 WARNING [main] org.apache.catalina.startup.ClassLoaderFactory.validateFile Problem with directory [/var/lib/tomcat8/common/classes], exists: [false], isDirectory: [false], canRead: [false]
  235. 30-Oct-2019 20:55:07.230 WARNING [main] org.apache.catalina.startup.ClassLoaderFactory.validateFile Problem with directory [/var/lib/tomcat8/common], exists: [false], isDirectory: [false], canRead: [false]
  236. 30-Oct-2019 20:55:07.231 WARNING [main] org.apache.catalina.startup.ClassLoaderFactory.validateFile Problem with directory [/usr/share/tomcat8/common/classes], exists: [false], isDirectory: [false], canRead: [false]
  237. 30-Oct-2019 20:55:07.231 WARNING [main] org.apache.catalina.startup.ClassLoaderFactory.validateFile Problem with directory [/usr/share/tomcat8/common], exists: [false], isDirectory: [false], canRead: [false]
  238. 30-Oct-2019 20:55:07.237 WARNING [main] org.apache.catalina.startup.ClassLoaderFactory.validateFile Problem with directory [/var/lib/tomcat8/server/classes], exists: [false], isDirectory: [false], canRead: [false]
  239. 30-Oct-2019 20:55:07.237 WARNING [main] org.apache.catalina.startup.ClassLoaderFactory.validateFile Problem with directory [/var/lib/tomcat8/server], exists: [false], isDirectory: [false], canRead: [false]
  240. 30-Oct-2019 20:55:07.237 WARNING [main] org.apache.catalina.startup.ClassLoaderFactory.validateFile Problem with directory [/usr/share/tomcat8/server/classes], exists: [false], isDirectory: [false], canRead: [false]
  241. 30-Oct-2019 20:55:07.238 WARNING [main] org.apache.catalina.startup.ClassLoaderFactory.validateFile Problem with directory [/usr/share/tomcat8/server], exists: [false], isDirectory: [false], canRead: [false]
  242. 30-Oct-2019 20:55:07.241 WARNING [main] org.apache.catalina.startup.ClassLoaderFactory.validateFile Problem with directory [/var/lib/tomcat8/shared/classes], exists: [false], isDirectory: [false], canRead: [false]
  243. 30-Oct-2019 20:55:07.247 WARNING [main] org.apache.catalina.startup.ClassLoaderFactory.validateFile Problem with directory [/var/lib/tomcat8/shared], exists: [false], isDirectory: [false], canRead: [false]
  244. 30-Oct-2019 20:55:07.248 WARNING [main] org.apache.catalina.startup.ClassLoaderFactory.validateFile Problem with directory [/usr/share/tomcat8/shared/classes], exists: [false], isDirectory: [false], canRead: [false]
  245. 30-Oct-2019 20:55:07.248 WARNING [main] org.apache.catalina.startup.ClassLoaderFactory.validateFile Problem with directory [/usr/share/tomcat8/shared], exists: [false], isDirectory: [false], canRead: [false]
  246. 30-Oct-2019 20:55:08.526 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version: Apache Tomcat/8.5.39 (Ubuntu)
  247. 30-Oct-2019 20:55:08.529 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built: Sep 9 2019 19:47:51 UTC
  248. 30-Oct-2019 20:55:08.532 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server number: 8.5.39.0
  249. 30-Oct-2019 20:55:08.532 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name: Linux
  250. 30-Oct-2019 20:55:08.532 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version: 4.15.0-1052-aws
  251. 30-Oct-2019 20:55:08.533 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture: amd64
  252. 30-Oct-2019 20:55:08.533 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home: /usr/lib/jvm/java-11-openjdk-amd64
  253. 30-Oct-2019 20:55:08.533 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version: 11.0.4+11-post-Ubuntu-1ubuntu218.04.3
  254. 30-Oct-2019 20:55:08.534 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: Ubuntu
  255. 30-Oct-2019 20:55:08.536 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: /var/lib/tomcat8
  256. 30-Oct-2019 20:55:08.536 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: /usr/share/tomcat8
  257. 30-Oct-2019 20:55:08.537 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.lang=ALL-UNNAMED
  258. 30-Oct-2019 20:55:08.537 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.io=ALL-UNNAMED
  259. 30-Oct-2019 20:55:08.537 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.rmi/sun.rmi.transport=ALL-UNNAMED
  260. 30-Oct-2019 20:55:08.537 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=/var/lib/tomcat8/conf/logging.properties
  261. 30-Oct-2019 20:55:08.538 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
  262. 30-Oct-2019 20:55:08.538 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.awt.headless=true
  263. 30-Oct-2019 20:55:08.538 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:+UseConcMarkSweepGC
  264. 30-Oct-2019 20:55:08.538 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djdk.tls.ephemeralDHKeySize=2048
  265. 30-Oct-2019 20:55:08.539 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.protocol.handler.pkgs=org.apache.catalina.webresources
  266. 30-Oct-2019 20:55:08.543 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dorg.apache.catalina.security.SecurityListener.UMASK=0027
  267. 30-Oct-2019 20:55:08.543 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dignore.endorsed.dirs=
  268. 30-Oct-2019 20:55:08.543 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=/var/lib/tomcat8
  269. 30-Oct-2019 20:55:08.544 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=/usr/share/tomcat8
  270. 30-Oct-2019 20:55:08.544 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=/tmp/tomcat8-tomcat8-tmp
  271. 30-Oct-2019 20:55:08.544 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent Loaded APR based Apache Tomcat Native library [1.2.21] using APR version [1.6.3].
  272. 30-Oct-2019 20:55:08.544 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent APR capabilities: IPv6 [true], sendfile [true], accept filters [false], random [true].
  273. 30-Oct-2019 20:55:08.544 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent APR/OpenSSL configuration: useAprConnector [false], useOpenSSL [true]
  274. 30-Oct-2019 20:55:08.552 INFO [main] org.apache.catalina.core.AprLifecycleListener.initializeSSL OpenSSL successfully initialized [OpenSSL 1.1.1 11 Sep 2018]
  275. 30-Oct-2019 20:55:08.643 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8080"]
  276. 30-Oct-2019 20:55:08.679 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read
  277. 30-Oct-2019 20:55:08.720 INFO [main] org.apache.catalina.startup.Catalina.load Initialization processed in 1337 ms
  278. 30-Oct-2019 20:55:08.868 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service [Catalina]
  279. 30-Oct-2019 20:55:08.869 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet Engine: Apache Tomcat/8.5.39 (Ubuntu)
  280. 30-Oct-2019 20:55:08.892 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDescriptor Deploying configuration descriptor [/etc/tomcat8/Catalina/localhost/host-manager.xml]
  281. 30-Oct-2019 20:55:10.748 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  282. 30-Oct-2019 20:55:10.823 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDescriptor Deployment of configuration descriptor [/etc/tomcat8/Catalina/localhost/host-manager.xml] has finished in [1,927] ms
  283. 30-Oct-2019 20:55:10.823 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDescriptor Deploying configuration descriptor [/etc/tomcat8/Catalina/localhost/manager.xml]
  284. 30-Oct-2019 20:55:11.595 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  285. 30-Oct-2019 20:55:11.604 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDescriptor Deployment of configuration descriptor [/etc/tomcat8/Catalina/localhost/manager.xml] has finished in [781] ms
  286. 30-Oct-2019 20:55:11.606 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/var/lib/tomcat8/webapps/openmrs]
  287. 30-Oct-2019 20:55:11.613 WARNING [localhost-startStop-1] org.apache.catalina.startup.SetContextPropertiesRule.begin [SetContextPropertiesRule]{Context} Setting property 'antiJARLocking' to 'true' did not find a matching property.
  288. 30-Oct-2019 20:55:17.541 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  289. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2078) |2019-10-30 20:55:18,016| Unable to find a runtime properties file at /var/lib/tomcat8/openmrs-runtime.properties
  290. WARN - OpenmrsUtil.getApplicationDataDirectory(1044) |2019-10-30 20:55:18,048| Unable to write to users home dir, fallback to: /var/lib
  291. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2078) |2019-10-30 20:55:18,049| Unable to find a runtime properties file at /var/lib/tomcat8/openmrs-runtime.properties
  292. WARN - OpenmrsUtil.getApplicationDataDirectory(1044) |2019-10-30 20:55:18,049| Unable to write to users home dir, fallback to: /var/lib
  293. INFO - Listener.contextInitialized(173) |2019-10-30 20:55:18,052| Using runtime properties file: /var/lib/OpenMRS/openmrs-runtime.properties
  294. Wed Oct 30 20:55:18 UTC 2019 WARN: Establishing SSL connection without server's identity verification is not recommended. According to MySQL 5.5.45+, 5.6.26+ and 5.7.6+ requirements SSL connection must be established by default if explicit option isn't set. For compliance with existing applications not using SSL the verifyServerCertificate property is set to 'false'. You need either to explicitly disable SSL by setting useSSL=false, or set useSSL=true and provide truststore for server certificate verification.
  295. INFO 10/30/19, 8:55 PM:liquibase: Reading from `liquibasechangelog`
  296. WARNING 10/30/19, 8:55 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  297. WARNING 10/30/19, 8:55 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  298. WARNING 10/30/19, 8:55 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  299. Wed Oct 30 20:55:21 UTC 2019 WARN: Establishing SSL connection without server's identity verification is not recommended. According to MySQL 5.5.45+, 5.6.26+ and 5.7.6+ requirements SSL connection must be established by default if explicit option isn't set. For compliance with existing applications not using SSL the verifyServerCertificate property is set to 'false'. You need either to explicitly disable SSL by setting useSSL=false, or set useSSL=true and provide truststore for server certificate verification.
  300. WARNING: An illegal reflective access operation has occurred
  301. WARNING: Illegal reflective access by com.thoughtworks.xstream.core.util.Fields (file:/var/lib/tomcat8/webapps/openmrs/WEB-INF/lib/xstream-1.4.11.1.jar) to field java.util.TreeMap.comparator
  302. WARNING: Please consider reporting this to the maintainers of com.thoughtworks.xstream.core.util.Fields
  303. WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
  304. WARNING: All illegal access operations will be denied in a future release
  305. INFO - EhCacheManagerFactoryBean.afterPropertiesSet(129) |2019-10-30 20:55:25,243| Initializing EhCache CacheManager
  306. WARN - OpenmrsUtil.getApplicationDataDirectory(1044) |2019-10-30 20:55:27,202| Unable to write to users home dir, fallback to: /var/lib
  307. Wed Oct 30 20:55:29 UTC 2019 WARN: Establishing SSL connection without server's identity verification is not recommended. According to MySQL 5.5.45+, 5.6.26+ and 5.7.6+ requirements SSL connection must be established by default if explicit option isn't set. For compliance with existing applications not using SSL the verifyServerCertificate property is set to 'false'. You need either to explicitly disable SSL by setting useSSL=false, or set useSSL=true and provide truststore for server certificate verification.
  308. WARN - SimpleUrlHandlerMapping.registerHandlers(115) |2019-10-30 20:55:37,467| Neither 'urlMap' nor 'mappings' set on SimpleUrlHandlerMapping
  309. WARN - Listener.loadBundledModules(500) |2019-10-30 20:55:37,500| Bundled module folder doesn't exist: /var/lib/tomcat8/webapps/openmrs/WEB-INF/bundledModules
  310. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2078) |2019-10-30 20:55:37,501| Unable to find a runtime properties file at /var/lib/tomcat8/openmrs-runtime.properties
  311. WARN - OpenmrsUtil.getApplicationDataDirectory(1044) |2019-10-30 20:55:37,502| Unable to write to users home dir, fallback to: /var/lib
  312. Wed Oct 30 20:55:37 UTC 2019 WARN: Establishing SSL connection without server's identity verification is not recommended. According to MySQL 5.5.45+, 5.6.26+ and 5.7.6+ requirements SSL connection must be established by default if explicit option isn't set. For compliance with existing applications not using SSL the verifyServerCertificate property is set to 'false'. You need either to explicitly disable SSL by setting useSSL=false, or set useSSL=true and provide truststore for server certificate verification.
  313. INFO 10/30/19, 8:55 PM:liquibase: Reading from `liquibasechangelog`
  314. WARNING 10/30/19, 8:55 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  315. WARNING 10/30/19, 8:55 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  316. WARNING 10/30/19, 8:55 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  317. Wed Oct 30 20:55:39 UTC 2019 WARN: Establishing SSL connection without server's identity verification is not recommended. According to MySQL 5.5.45+, 5.6.26+ and 5.7.6+ requirements SSL connection must be established by default if explicit option isn't set. For compliance with existing applications not using SSL the verifyServerCertificate property is set to 'false'. You need either to explicitly disable SSL by setting useSSL=false, or set useSSL=true and provide truststore for server certificate verification.
  318. WARN - OpenmrsUtil.getApplicationDataDirectory(1044) |2019-10-30 20:55:39,645| Unable to write to users home dir, fallback to: /var/lib
  319. WARN - OpenmrsUtil.getApplicationDataDirectory(1044) |2019-10-30 20:55:40,586| Unable to write to users home dir, fallback to: /var/lib
  320. WARN - OpenmrsUtil.getApplicationDataDirectory(1044) |2019-10-30 20:55:40,688| Unable to write to users home dir, fallback to: /var/lib
  321. INFO - LoggingAdvice.invoke(116) |2019-10-30 20:55:40,961| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: legacyui.started value: true,
  322. INFO - LoggingAdvice.invoke(156) |2019-10-30 20:55:41,008| Exiting method saveGlobalProperty
  323. INFO - LoggingAdvice.invoke(116) |2019-10-30 20:55:41,019| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: legacyui.mandatory value: false,
  324. INFO - LoggingAdvice.invoke(156) |2019-10-30 20:55:41,028| Exiting method saveGlobalProperty
  325. INFO - LoggingAdvice.invoke(116) |2019-10-30 20:55:41,250| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: webservices.rest.started value: true,
  326. INFO - LoggingAdvice.invoke(156) |2019-10-30 20:55:41,265| Exiting method saveGlobalProperty
  327. INFO - LoggingAdvice.invoke(116) |2019-10-30 20:55:41,269| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: webservices.rest.mandatory value: false,
  328. INFO - LoggingAdvice.invoke(156) |2019-10-30 20:55:41,280| Exiting method saveGlobalProperty
  329. Wed Oct 30 20:55:41 UTC 2019 WARN: Establishing SSL connection without server's identity verification is not recommended. According to MySQL 5.5.45+, 5.6.26+ and 5.7.6+ requirements SSL connection must be established by default if explicit option isn't set. For compliance with existing applications not using SSL the verifyServerCertificate property is set to 'false'. You need either to explicitly disable SSL by setting useSSL=false, or set useSSL=true and provide truststore for server certificate verification.
  330. INFO 10/30/19, 8:55 PM:liquibase: liquibase.xml is using schema version 1.9 rather than version 2.0
  331. INFO 10/30/19, 8:55 PM:liquibase: Reading from `liquibasechangelog`
  332. INFO 10/30/19, 8:55 PM:liquibase: Successfully acquired change log lock
  333. INFO 10/30/19, 8:55 PM:liquibase: liquibase.xml is using schema version 1.9 rather than version 2.0
  334. INFO 10/30/19, 8:55 PM:liquibase: Successfully released change log lock
  335. INFO - LoggingAdvice.invoke(116) |2019-10-30 20:55:42,159| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: fhir.started value: true,
  336. INFO - LoggingAdvice.invoke(156) |2019-10-30 20:55:42,169| Exiting method saveGlobalProperty
  337. INFO - LoggingAdvice.invoke(116) |2019-10-30 20:55:42,175| In method AdministrationService.saveGlobalProperty. Arguments: GlobalProperty=property: fhir.mandatory value: false,
  338. INFO - LoggingAdvice.invoke(156) |2019-10-30 20:55:42,182| Exiting method saveGlobalProperty
  339. INFO - LoggingAdvice.invoke(116) |2019-10-30 20:55:42,577| In method SchedulerService.saveToMemento. Arguments:
  340. INFO - LoggingAdvice.invoke(156) |2019-10-30 20:55:42,610| Exiting method saveToMemento
  341. INFO - EhCacheManagerFactoryBean.destroy(181) |2019-10-30 20:55:42,696| Shutting down EhCache CacheManager
  342. INFO - ServiceContext.startRefreshingContext(832) |2019-10-30 20:55:42,702| Refreshing Context
  343. INFO - EhCacheManagerFactoryBean.afterPropertiesSet(129) |2019-10-30 20:55:46,082| Initializing EhCache CacheManager
  344. WARN - OpenmrsUtil.getApplicationDataDirectory(1044) |2019-10-30 20:55:46,167| Unable to write to users home dir, fallback to: /var/lib
  345. Wed Oct 30 20:55:47 UTC 2019 WARN: Establishing SSL connection without server's identity verification is not recommended. According to MySQL 5.5.45+, 5.6.26+ and 5.7.6+ requirements SSL connection must be established by default if explicit option isn't set. For compliance with existing applications not using SSL the verifyServerCertificate property is set to 'false'. You need either to explicitly disable SSL by setting useSSL=false, or set useSSL=true and provide truststore for server certificate verification.
  346. WARN - SimpleUrlHandlerMapping.registerHandlers(115) |2019-10-30 20:55:52,336| Neither 'urlMap' nor 'mappings' set on SimpleUrlHandlerMapping
  347. WARN - SimpleUrlHandlerMapping.registerHandlers(115) |2019-10-30 20:55:52,614| Neither 'urlMap' nor 'mappings' set on SimpleUrlHandlerMapping
  348. INFO - ServiceContext.doneRefreshingContext(843) |2019-10-30 20:55:52,626| Done refreshing Context
  349. Wed Oct 30 20:55:52 UTC 2019 WARN: Establishing SSL connection without server's identity verification is not recommended. According to MySQL 5.5.45+, 5.6.26+ and 5.7.6+ requirements SSL connection must be established by default if explicit option isn't set. For compliance with existing applications not using SSL the verifyServerCertificate property is set to 'false'. You need either to explicitly disable SSL by setting useSSL=false, or set useSSL=true and provide truststore for server certificate verification.
  350. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2078) |2019-10-30 20:55:58,060| Unable to find a runtime properties file at /var/lib/tomcat8/openmrs-runtime.properties
  351. WARN - OpenmrsUtil.getApplicationDataDirectory(1044) |2019-10-30 20:55:58,060| Unable to write to users home dir, fallback to: /var/lib
  352. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2078) |2019-10-30 20:55:58,241| Unable to find a runtime properties file at /var/lib/tomcat8/openmrs-runtime.properties
  353. WARN - OpenmrsUtil.getApplicationDataDirectory(1044) |2019-10-30 20:55:58,241| Unable to write to users home dir, fallback to: /var/lib
  354. Wed Oct 30 20:55:58 UTC 2019 WARN: Establishing SSL connection without server's identity verification is not recommended. According to MySQL 5.5.45+, 5.6.26+ and 5.7.6+ requirements SSL connection must be established by default if explicit option isn't set. For compliance with existing applications not using SSL the verifyServerCertificate property is set to 'false'. You need either to explicitly disable SSL by setting useSSL=false, or set useSSL=true and provide truststore for server certificate verification.
  355. 30-Oct-2019 20:55:58.260 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/var/lib/tomcat8/webapps/openmrs] has finished in [46,652] ms
  356. 30-Oct-2019 20:55:58.261 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/var/lib/tomcat8/webapps/ROOT]
  357. 30-Oct-2019 20:55:58.953 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  358. 30-Oct-2019 20:55:58.955 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/var/lib/tomcat8/webapps/ROOT] has finished in [694] ms
  359. 30-Oct-2019 20:55:58.964 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-8080"]
  360. 30-Oct-2019 20:55:59.008 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in 50287 ms
  361. Wed Oct 30 21:28:23 UTC 2019 WARN: Establishing SSL connection without server's identity verification is not recommended. According to MySQL 5.5.45+, 5.6.26+ and 5.7.6+ requirements SSL connection must be established by default if explicit option isn't set. For compliance with existing applications not using SSL the verifyServerCertificate property is set to 'false'. You need either to explicitly disable SSL by setting useSSL=false, or set useSSL=true and provide truststore for server certificate verification.
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