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misnomer001

russia_sarm shamanka caucasus 0

misnomer001
Aug 8th, 2020
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  1. qpAdm: parameter file: par_alalakh
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. fstatsname: fstatsa.txt
  5. popleft: left1
  6. popright: right1
  7. details: YES
  8. allsnps: YES
  9. ## qpAdm version: 1201
  10. seed: 1859941992
  11.  
  12. left pops:
  13. Russia_Sarmatian.SG
  14. Russia_Srubnaya
  15. Russia_Tagar.SG
  16. Russia_Shamanka_EBA.SG
  17. Russia_North_Caucasus
  18. Turkmenistan_IA.SG
  19.  
  20. right pops:
  21. Cameroon_SMA.DG
  22. Russia_HG_Karelia
  23. Tyumen_HG
  24. Jordan_PPNB
  25. Serbia_Mesolithic_IronGates
  26. Anatolia_N
  27. Iran_GanjDareh_N
  28. Russia_UstBelaya_Angara
  29. ONG.SG
  30. Botai
  31.  
  32. codimension 1
  33. f4info:
  34. f4rank: 4 dof: 5 chisq: 11.681 tail: 0.0394286764 dofdiff: 7 chisqdiff: -11.681 taildiff: 1
  35. B:
  36. scale 1.000 1.000 1.000 1.000
  37. Russia_HG_Karelia 0.696 1.256 -0.365 -0.222
  38. Tyumen_HG 0.173 1.506 0.691 -0.946
  39. Jordan_PPNB 1.079 0.218 0.765 -0.052
  40. Serbia_Mesolithic_IronGates 1.078 0.836 -1.649 0.739
  41. Anatolia_N 1.090 -0.101 -0.892 0.674
  42. Iran_GanjDareh_N 0.793 -0.108 1.983 -0.584
  43. Russia_UstBelaya_Angara -1.932 1.539 0.026 2.371
  44. ONG.SG -0.776 0.385 -0.373 0.761
  45. Botai -0.075 1.368 0.466 -0.717
  46. A:
  47. scale 274.620 835.184 1743.322 1960.204
  48. Russia_Srubnaya 0.559 0.812 -0.353 1.102
  49. Russia_Tagar.SG -0.176 0.513 -0.518 -0.163
  50. Russia_Shamanka_EBA.SG -2.107 0.975 0.996 1.778
  51. Russia_North_Caucasus 0.431 1.441 1.343 0.166
  52. Turkmenistan_IA.SG 0.172 -1.026 1.346 0.755
  53.  
  54.  
  55. full rank
  56. f4info:
  57. f4rank: 5 dof: 0 chisq: 0.000 tail: 1 dofdiff: 5 chisqdiff: 11.681 taildiff: 0.0394286764
  58. B:
  59. scale 473.882 940.768 117.400 413.410 687.317
  60. Russia_HG_Karelia 1.261 0.466 -0.508 1.294 -1.102
  61. Tyumen_HG 0.790 1.297 0.044 1.625 -0.606
  62. Jordan_PPNB 1.005 -0.986 -0.927 1.074 0.430
  63. Serbia_Mesolithic_IronGates 1.855 0.275 -0.897 0.883 -0.924
  64. Anatolia_N 1.329 -0.462 -0.983 0.455 0.245
  65. Iran_GanjDareh_N 0.449 -0.942 -0.657 1.139 1.414
  66. Russia_UstBelaya_Angara -0.460 1.939 2.219 0.028 -1.483
  67. ONG.SG -0.205 0.913 0.842 -0.204 -0.578
  68. Botai 0.340 0.600 0.214 1.099 -1.338
  69. A:
  70. scale 2.236 2.236 2.236 2.236 2.236
  71. Russia_Srubnaya 2.236 0.000 0.000 0.000 0.000
  72. Russia_Tagar.SG 0.000 2.236 0.000 0.000 0.000
  73. Russia_Shamanka_EBA.SG 0.000 0.000 2.236 0.000 0.000
  74. Russia_North_Caucasus 0.000 0.000 0.000 2.236 0.000
  75. Turkmenistan_IA.SG 0.000 0.000 0.000 0.000 2.236
  76.  
  77.  
  78. best coefficients: -0.031 0.759 -0.045 0.002 0.315
  79. totmean: -0.031 0.759 -0.045 0.002 0.315
  80. boot mean: -0.034 0.761 -0.046 0.002 0.317
  81. std. errors: 0.163 0.232 0.046 0.060 0.063
  82.  
  83. error covariance (* 1,000,000)
  84. 26504 -35681 7088 -2075 4163
  85. -35681 54012 -10534 206 -8003
  86. 7088 -10534 2126 -146 1467
  87. -2075 206 -146 3659 -1644
  88. 4163 -8003 1467 -1644 4017
  89.  
  90.  
  91. summ: Russia_Sarmatian.SG 5 0.039429 -0.034 0.761 -0.046 0.002 0.317 26504 -35681 7088 -2075 4163 ...
  92. 54012 -10534 206 -8003 2126 ...
  93. -146 1467 3659 -1644 4017
  94.  
  95. fixed pat wt dof chisq tail prob
  96. 00000 0 5 11.681 0.0394287 -0.031 0.759 -0.045 0.002 0.315 infeasible
  97. 00001 1 6 37.155 1.64276e-06 -0.637 1.747 -0.238 0.128 0.000 infeasible
  98. 00010 1 6 11.732 0.0682122 -0.018 0.744 -0.042 0.000 0.316 infeasible
  99. 00100 1 6 15.004 0.0202242 0.119 0.532 0.000 0.010 0.339
  100. 01000 1 6 26.688 0.000165622 0.442 0.000 0.099 0.003 0.455
  101. 10000 1 6 12.656 0.0488385 0.000 0.702 -0.035 0.009 0.324 infeasible
  102. 00011 2 7 43.674 2.47163e-07 -0.762 2.057 -0.296 0.000 0.000 infeasible
  103. 00101 2 7 83.226 3.02254e-15 0.163 0.633 0.000 0.204 0.000
  104. 00110 2 7 13.604 0.0586877 0.117 0.532 0.000 0.000 0.351
  105. 01001 2 7 135.545 4.35481e-26 0.542 0.000 0.117 0.341 0.000
  106. 01010 2 7 26.288 0.000447359 0.449 0.000 0.099 0.000 0.452
  107. 01100 2 7 117.994 2.00393e-22 0.232 0.000 0.000 -0.556 1.324 infeasible
  108. 10001 2 7 58.721 2.71587e-10 0.000 0.984 -0.077 0.094 0.000 infeasible
  109. 10010 2 7 13.530 0.0602041 0.000 0.703 -0.035 0.000 0.332 infeasible
  110. 10100 2 7 18.581 0.00960699 0.000 0.557 0.000 0.071 0.371
  111. 11000 2 7 77.252 4.99825e-14 0.000 0.000 0.075 0.165 0.760
  112. 00111 3 8 94.555 5.51188e-17 0.300 0.700 0.000 0.000 0.000
  113. 01011 3 8 165.974 0 0.866 0.000 0.134 0.000 0.000
  114. 01101 3 8 376.051 0 -0.091 0.000 0.000 1.091 0.000 infeasible
  115. 01110 3 8 127.567 9.02941e-24 0.059 0.000 0.000 0.000 0.941
  116. 10011 3 8 67.038 1.90597e-11 0.000 1.096 -0.096 0.000 0.000 infeasible
  117. 10101 3 8 92.795 1.25747e-16 0.000 0.669 0.000 0.331 0.000
  118. 10110 3 8 141.637 1.08345e-26 0.000 0.456 0.000 0.000 0.544
  119. 11001 3 8 229.336 0 0.000 0.000 0.093 0.907 0.000
  120. 11010 3 8 91.070 2.81995e-16 0.000 0.000 0.073 0.000 0.927
  121. 11100 3 8 121.239 1.83888e-22 0.000 0.000 0.000 -0.403 1.403 infeasible
  122. 01111 4 9 532.482 0 1.000 0.000 0.000 0.000 0.000
  123. 10111 4 9 161.117 4.35157e-30 0.000 1.000 0.000 0.000 0.000
  124. 11011 4 9 5799.298 0 0.000 0.000 1.000 0.000 0.000
  125. 11101 4 9 378.291 0 0.000 0.000 0.000 1.000 0.000
  126. 11110 4 9 127.191 4.48043e-23 0.000 0.000 0.000 0.000 1.000
  127. best pat: 00000 0.0394287 - -
  128. best pat: 00100 0.0202242 chi(nested): 3.323 p-value for nested model: 0.0683133
  129. best pat: 00110 0.0586877 chi(nested): -1.400 p-value for nested model: -nan
  130. best pat: 11010 2.81995e-16 not nested
  131. best pat: 11110 4.48043e-23 chi(nested): 36.121 p-value for nested model: 1.85403e-09
  132.  
  133. coeffs: -0.031 0.759 -0.045 0.002 0.315
  134.  
  135. ## dscore:: f_4(Base, Fit, Rbase, right2)
  136. ## genstat:: f_4(Base, Fit, right1, right2)
  137.  
  138. details: Russia_Srubnaya Russia_HG_Karelia 0.002660 7.810029
  139. details: Russia_Tagar.SG Russia_HG_Karelia 0.000495 1.372883
  140. details: Russia_Shamanka_EBA.SG Russia_HG_Karelia -0.004329 -8.781818
  141. details: Russia_North_Caucasus Russia_HG_Karelia 0.003130 7.849568
  142. details: Turkmenistan_IA.SG Russia_HG_Karelia -0.001604 -2.876234
  143. dscore: Russia_HG_Karelia f4: -0.000009 Z: -0.024270
  144.  
  145. details: Russia_Srubnaya Tyumen_HG 0.001667 4.753167
  146. details: Russia_Tagar.SG Tyumen_HG 0.001379 3.810032
  147. details: Russia_Shamanka_EBA.SG Tyumen_HG 0.000374 0.685115
  148. details: Russia_North_Caucasus Tyumen_HG 0.003930 9.674991
  149. details: Turkmenistan_IA.SG Tyumen_HG -0.000881 -1.460243
  150. dscore: Tyumen_HG f4: 0.000710 Z: 1.951699
  151.  
  152. details: Russia_Srubnaya Jordan_PPNB 0.002121 6.576942
  153. details: Russia_Tagar.SG Jordan_PPNB -0.001048 -3.077034
  154. details: Russia_Shamanka_EBA.SG Jordan_PPNB -0.007898 -17.401373
  155. details: Russia_North_Caucasus Jordan_PPNB 0.002598 6.776110
  156. details: Turkmenistan_IA.SG Jordan_PPNB 0.000625 1.170732
  157. dscore: Jordan_PPNB f4: -0.000301 Z: -0.868932
  158.  
  159. details: Russia_Srubnaya Serbia_Mesolithic_IronGates 0.003914 15.009505
  160. details: Russia_Tagar.SG Serbia_Mesolithic_IronGates 0.000292 1.103656
  161. details: Russia_Shamanka_EBA.SG Serbia_Mesolithic_IronGates -0.007638 -19.989560
  162. details: Russia_North_Caucasus Serbia_Mesolithic_IronGates 0.002135 7.077456
  163. details: Turkmenistan_IA.SG Serbia_Mesolithic_IronGates -0.001344 -3.005275
  164. dscore: Serbia_Mesolithic_IronGates f4: 0.000028 Z: 0.102316
  165.  
  166. details: Russia_Srubnaya Anatolia_N 0.002804 12.179798
  167. details: Russia_Tagar.SG Anatolia_N -0.000491 -2.038767
  168. details: Russia_Shamanka_EBA.SG Anatolia_N -0.008369 -23.862779
  169. details: Russia_North_Caucasus Anatolia_N 0.001101 3.917182
  170. details: Turkmenistan_IA.SG Anatolia_N 0.000357 0.865852
  171. dscore: Anatolia_N f4: 0.000034 Z: 0.137675
  172.  
  173. details: Russia_Srubnaya Iran_GanjDareh_N 0.000947 3.866111
  174. details: Russia_Tagar.SG Iran_GanjDareh_N -0.001001 -3.926245
  175. details: Russia_Shamanka_EBA.SG Iran_GanjDareh_N -0.005600 -14.860857
  176. details: Russia_North_Caucasus Iran_GanjDareh_N 0.002754 9.798292
  177. details: Turkmenistan_IA.SG Iran_GanjDareh_N 0.002057 4.848395
  178. dscore: Iran_GanjDareh_N f4: 0.000119 Z: 0.455572
  179.  
  180. details: Russia_Srubnaya Russia_UstBelaya_Angara -0.000971 -3.751300
  181. details: Russia_Tagar.SG Russia_UstBelaya_Angara 0.002061 7.197324
  182. details: Russia_Shamanka_EBA.SG Russia_UstBelaya_Angara 0.018900 45.571947
  183. details: Russia_North_Caucasus Russia_UstBelaya_Angara 0.000068 0.221792
  184. details: Turkmenistan_IA.SG Russia_UstBelaya_Angara -0.002157 -4.823199
  185. dscore: Russia_UstBelaya_Angara f4: 0.000060 Z: 0.210192
  186.  
  187. details: Russia_Srubnaya ONG.SG -0.000433 -1.711583
  188. details: Russia_Tagar.SG ONG.SG 0.000970 3.719780
  189. details: Russia_Shamanka_EBA.SG ONG.SG 0.007174 17.935000
  190. details: Russia_North_Caucasus ONG.SG -0.000494 -1.637594
  191. details: Turkmenistan_IA.SG ONG.SG -0.000841 -1.909392
  192. dscore: ONG.SG f4: 0.000159 Z: 0.592780
  193.  
  194. details: Russia_Srubnaya Botai 0.000718 2.317335
  195. details: Russia_Tagar.SG Botai 0.000638 1.987934
  196. details: Russia_Shamanka_EBA.SG Botai 0.001822 3.902295
  197. details: Russia_North_Caucasus Botai 0.002658 7.103804
  198. details: Turkmenistan_IA.SG Botai -0.001946 -3.752033
  199. dscore: Botai f4: -0.000227 Z: -0.703784
  200.  
  201. gendstat: Cameroon_SMA.DG Russia_HG_Karelia -0.024
  202. gendstat: Cameroon_SMA.DG Tyumen_HG 1.952
  203. gendstat: Cameroon_SMA.DG Jordan_PPNB -0.869
  204. gendstat: Cameroon_SMA.DG Serbia_Mesolithic_IronGates 0.102
  205. gendstat: Cameroon_SMA.DG Anatolia_N 0.138
  206. gendstat: Cameroon_SMA.DG Iran_GanjDareh_N 0.456
  207. gendstat: Cameroon_SMA.DG Russia_UstBelaya_Angara 0.210
  208. gendstat: Cameroon_SMA.DG ONG.SG 0.593
  209. gendstat: Cameroon_SMA.DG Botai -0.704
  210. gendstat: Russia_HG_Karelia Tyumen_HG 1.913
  211. gendstat: Russia_HG_Karelia Jordan_PPNB -0.685
  212. gendstat: Russia_HG_Karelia Serbia_Mesolithic_IronGates 0.125
  213. gendstat: Russia_HG_Karelia Anatolia_N 0.135
  214. gendstat: Russia_HG_Karelia Iran_GanjDareh_N 0.376
  215. gendstat: Russia_HG_Karelia Russia_UstBelaya_Angara 0.211
  216. gendstat: Russia_HG_Karelia ONG.SG 0.464
  217. gendstat: Russia_HG_Karelia Botai -0.649
  218. gendstat: Tyumen_HG Jordan_PPNB -2.296
  219. gendstat: Tyumen_HG Serbia_Mesolithic_IronGates -1.978
  220. gendstat: Tyumen_HG Anatolia_N -1.955
  221. gendstat: Tyumen_HG Iran_GanjDareh_N -1.641
  222. gendstat: Tyumen_HG Russia_UstBelaya_Angara -1.949
  223. gendstat: Tyumen_HG ONG.SG -1.578
  224. gendstat: Tyumen_HG Botai -2.841
  225. gendstat: Jordan_PPNB Serbia_Mesolithic_IronGates 1.008
  226. gendstat: Jordan_PPNB Anatolia_N 1.227
  227. gendstat: Jordan_PPNB Iran_GanjDareh_N 1.259
  228. gendstat: Jordan_PPNB Russia_UstBelaya_Angara 1.005
  229. gendstat: Jordan_PPNB ONG.SG 1.305
  230. gendstat: Jordan_PPNB Botai 0.190
  231. gendstat: Serbia_Mesolithic_IronGates Anatolia_N 0.037
  232. gendstat: Serbia_Mesolithic_IronGates Iran_GanjDareh_N 0.354
  233. gendstat: Serbia_Mesolithic_IronGates Russia_UstBelaya_Angara 0.123
  234. gendstat: Serbia_Mesolithic_IronGates ONG.SG 0.496
  235. gendstat: Serbia_Mesolithic_IronGates Botai -0.914
  236. gendstat: Anatolia_N Iran_GanjDareh_N 0.378
  237. gendstat: Anatolia_N Russia_UstBelaya_Angara 0.102
  238. gendstat: Anatolia_N ONG.SG 0.493
  239. gendstat: Anatolia_N Botai -0.899
  240. gendstat: Iran_GanjDareh_N Russia_UstBelaya_Angara -0.217
  241. gendstat: Iran_GanjDareh_N ONG.SG 0.156
  242. gendstat: Iran_GanjDareh_N Botai -1.129
  243. gendstat: Russia_UstBelaya_Angara ONG.SG 0.440
  244. gendstat: Russia_UstBelaya_Angara Botai -1.100
  245. gendstat: ONG.SG Botai -1.296
  246.  
  247. ##end of qpAdm: 36.844 seconds cpu 1.307 Mbytes in use
  248.  
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