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a guest May 16th, 2018 111 Never
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  1. # LSBATCH: User input
  2. #!/bin/bash
  3. ### job name
  4. #BSUB -J BLAST4
  5. #BSUB -n 1 # request 1 CPUs
  6. #BSUB -M 2 # request 2GB of memory
  7. #BSUB -e /users/mplunkett/Trial1/Sample2/BLASTOutput/Blast4.%J.err
  8. echo 'working directory is ' $LS_SUBCWD
  9. echo -n 'Executed on ' $LSB_HOSTS
  10.  
  11.  
  12.  
  13. ##### run my app
  14. /users/mplunkett/blast-2.2.25/bin/blastall -p blastn -F F -d /users/mplunkett/Trial1/release10_27_unaligned.fa -i /users/mplunkett/Trial1/Sample2/FNAFiles/323--Sample4.fna -o /users/mplunkett/Trial1/Sample2/BLASTOutput/323--Sample4.fna.blout
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