# LSBATCH: User input
#!/bin/bash
### job name
#BSUB -J BLAST4
#BSUB -n 1 # request 1 CPUs
#BSUB -M 2 # request 2GB of memory
#BSUB -e /users/mplunkett/Trial1/Sample2/BLASTOutput/Blast4.%J.err
echo 'working directory is ' $LS_SUBCWD
echo -n 'Executed on ' $LSB_HOSTS



##### run my app
/users/mplunkett/blast-2.2.25/bin/blastall -p blastn -F F -d /users/mplunkett/Trial1/release10_27_unaligned.fa -i /users/mplunkett/Trial1/Sample2/FNAFiles/323--Sample4.fna -o /users/mplunkett/Trial1/Sample2/BLASTOutput/323--Sample4.fna.blout