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  1. 2018-06-15 08:57:35,814 6177 [ main] INFO ormats.importer.cli.LoggingImportMonitor - FILESET_UPLOAD_START
  2. 2018-06-15 08:57:35,847 6210 [ main] INFO s.importer.transfers.SymlinkFileTransfer - Transferring /data/import/u1473606/RPE1Sec61gfp_16_11_17/RPE1-ser61bGFP_siRDNA_noco_wash1H_2_4_R3D.dv...
  3. 2018-06-15 08:57:36,030 6393 [ main] INFO ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /data/import/u1473606/RPE1Sec61gfp_16_11_17/RPE1-ser61bGFP_siRDNA_noco_wash1H_2_4_R3D.dv
  4. 2018-06-15 08:58:34,298 64661 [1-thread-1] DEBUG ome.formats.OMEROMetadataStoreClient - KeepAlive ping.
  5. 2018-06-15 08:58:45,414 75777 [ main] DEBUG ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_BYTES uploaded: 12130855936 of: 12130855936 bytes (ETA: 0' 0")
  6. 2018-06-15 08:58:45,500 75863 [ main] DEBUG ormats.importer.cli.LoggingImportMonitor - FILE_EXCEPTION: /data/import/u1473606/RPE1Sec61gfp_16_11_17/RPE1-ser61bGFP_siRDNA_noco_wash1H_2_4_R3D.dv
  7. 2018-06-15 08:58:45,501 75864 [ main] ERROR ome.formats.importer.cli.ErrorHandler - FILE_EXCEPTION: /data/import/u1473606/RPE1Sec61gfp_16_11_17/RPE1-ser61bGFP_siRDNA_noco_wash1H_2_4_R3D.dv
  8. omero.ResourceError: null
  9. at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) ~[na:1.8.0_171]
  10. at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) ~[na:1.8.0_171]
  11. at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) ~[na:1.8.0_171]
  12. at java.lang.reflect.Constructor.newInstance(Constructor.java:423) ~[na:1.8.0_171]
  13. at java.lang.Class.newInstance(Class.java:442) ~[na:1.8.0_171]
  14. at IceInternal.BasicStream.createUserException(BasicStream.java:2779) ~[ice.jar:na]
  15. at IceInternal.BasicStream.access$300(BasicStream.java:14) ~[ice.jar:na]
  16. at IceInternal.BasicStream$EncapsDecoder10.throwException(BasicStream.java:3298) ~[ice.jar:na]
  17. at IceInternal.BasicStream.throwException(BasicStream.java:2291) ~[ice.jar:na]
  18. at IceInternal.OutgoingAsync.throwUserException(OutgoingAsync.java:399) ~[ice.jar:na]
  19. at omero.api.RawFileStorePrxHelper.end_save(RawFileStorePrxHelper.java:724) ~[blitz.jar:na]
  20. at omero.api.RawFileStorePrxHelper.save(RawFileStorePrxHelper.java:611) ~[blitz.jar:na]
  21. at omero.api.RawFileStorePrxHelper.save(RawFileStorePrxHelper.java:598) ~[blitz.jar:na]
  22. at ome.formats.importer.transfers.TransferState.save(TransferState.java:128) ~[blitz.jar:na]
  23. at ome.formats.importer.transfers.AbstractFileTransfer.finish(AbstractFileTransfer.java:114) ~[blitz.jar:na]
  24. at ome.formats.importer.transfers.AbstractExecFileTransfer.transfer(AbstractExecFileTransfer.java:70) ~[blitz.jar:na]
  25. at ome.formats.importer.ImportLibrary.uploadFile(ImportLibrary.java:437) [blitz.jar:na]
  26. at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:518) [blitz.jar:na]
  27. at ome.formats.importer.ImportLibrary.importCandidates(ImportLibrary.java:289) [blitz.jar:na]
  28. at ome.formats.importer.cli.CommandLineImporter.start(CommandLineImporter.java:289) [blitz.jar:na]
  29. at ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:967) [blitz.jar:na]
  30. 2018-06-15 08:58:45,506 75869 [ main] DEBUG ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_ERROR
  31. 2018-06-15 08:58:45,507 75870 [ main] ERROR ome.formats.importer.ImportLibrary - Error on import: cannot flush /data/omerodata/ManagedRepository/root_0/2018-06/15/08-57-34.727/RPE1-ser61bGFP_siRDNA_noco_wash1H_2_4_R3D.dv: java.io.IOException: Permission denied
  32. omero.ResourceError: null
  33. at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) ~[na:1.8.0_171]
  34. at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) ~[na:1.8.0_171]
  35. at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) ~[na:1.8.0_171]
  36. at java.lang.reflect.Constructor.newInstance(Constructor.java:423) ~[na:1.8.0_171]
  37. at java.lang.Class.newInstance(Class.java:442) ~[na:1.8.0_171]
  38. at IceInternal.BasicStream.createUserException(BasicStream.java:2779) ~[ice.jar:na]
  39. at IceInternal.BasicStream.access$300(BasicStream.java:14) ~[ice.jar:na]
  40. at IceInternal.BasicStream$EncapsDecoder10.throwException(BasicStream.java:3298) ~[ice.jar:na]
  41. at IceInternal.BasicStream.throwException(BasicStream.java:2291) ~[ice.jar:na]
  42. at IceInternal.OutgoingAsync.throwUserException(OutgoingAsync.java:399) ~[ice.jar:na]
  43. at omero.api.RawFileStorePrxHelper.end_save(RawFileStorePrxHelper.java:724) ~[blitz.jar:na]
  44. at omero.api.RawFileStorePrxHelper.save(RawFileStorePrxHelper.java:611) ~[blitz.jar:na]
  45. at omero.api.RawFileStorePrxHelper.save(RawFileStorePrxHelper.java:598) ~[blitz.jar:na]
  46. at ome.formats.importer.transfers.TransferState.save(TransferState.java:128) ~[blitz.jar:na]
  47. at ome.formats.importer.transfers.AbstractFileTransfer.finish(AbstractFileTransfer.java:114) ~[blitz.jar:na]
  48. at ome.formats.importer.transfers.AbstractExecFileTransfer.transfer(AbstractExecFileTransfer.java:70) ~[blitz.jar:na]
  49. at ome.formats.importer.ImportLibrary.uploadFile(ImportLibrary.java:437) ~[blitz.jar:na]
  50. at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:518) ~[blitz.jar:na]
  51. at ome.formats.importer.ImportLibrary.importCandidates(ImportLibrary.java:289) ~[blitz.jar:na]
  52. at ome.formats.importer.cli.CommandLineImporter.start(CommandLineImporter.java:289) [blitz.jar:na]
  53. at ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:967) [blitz.jar:na]
  54. 2018-06-15 08:58:45,507 75870 [ main] INFO ome.formats.importer.ImportLibrary - Exiting on error
  55.  
  56. ==> Summary
  57. 0 files uploaded, 0 filesets created, 0 images imported, 2 errors in 0:01:11.067
  58. 2018-06-15 08:58:45,555 75918 [ main] DEBUG ome.formats.OMEROMetadataStoreClient - closing client session.
  59. 2018-06-15 08:58:45,558 75921 [ main] DEBUG ome.formats.OMEROMetadataStoreClient - client closed.
  60. 2018-06-15 08:58:45,558 75921 [ main] DEBUG ome.formats.OMEROMetadataStoreClient - Logout called, shutting keep alive down.
  61. 2018-06-15 08:58:45,558 75921 [ main] DEBUG ome.formats.OMEROMetadataStoreClient - keepalive shut down.
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