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misnomer001

hajji_firuz_ia

misnomer001
Apr 25th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1486716654
  4. read 1073741824 bytes
  5. read 2146675633 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. Iran_IA_HajjiFiruz
  11. Iran_C_HajjiFiruz
  12. Kyrgyzstan_BA_Aygirdjal
  13.  
  14. right pops:
  15. Cameroon_SMA.DG
  16. EEHG
  17. WSHG
  18. PPN
  19. WEHG
  20. Anatolia_N
  21. Iran_GanjDareh_N
  22. Russia_UstBelaya_Angara
  23. ONG.SG
  24. Botai
  25. CHG
  26.  
  27. 0 Iran_IA_HajjiFiruz 1
  28. 1 Iran_C_HajjiFiruz 5
  29. 2 Kyrgyzstan_BA_Aygirdjal 2
  30. 3 Cameroon_SMA.DG 1
  31. 4 EEHG 5
  32. 5 WSHG 3
  33. 6 PPN 11
  34. 7 WEHG 33
  35. 8 Anatolia_N 22
  36. 9 Iran_GanjDareh_N 8
  37. 10 Russia_UstBelaya_Angara 8
  38. 11 ONG.SG 6
  39. 12 Botai 2
  40. 13 CHG 2
  41. jackknife block size: 0.050
  42. snps: 1150509 indivs: 109
  43. number of blocks for block jackknife: 713
  44. ## ncols: 1150509
  45. coverage: Iran_IA_HajjiFiruz 479454
  46. coverage: Iran_C_HajjiFiruz 1021945
  47. coverage: Kyrgyzstan_BA_Aygirdjal 818114
  48. coverage: Cameroon_SMA.DG 1140138
  49. coverage: EEHG 1052093
  50. coverage: WSHG 858019
  51. coverage: PPN 847771
  52. coverage: WEHG 1140599
  53. coverage: Anatolia_N 1139031
  54. coverage: Iran_GanjDareh_N 1057358
  55. coverage: Russia_UstBelaya_Angara 1072574
  56. coverage: ONG.SG 1143397
  57. coverage: Botai 926654
  58. coverage: CHG 1149558
  59. dof (jackknife): 620.895
  60. numsnps used: 1150509
  61. codimension 1
  62. f4info:
  63. f4rank: 1 dof: 9 chisq: 3.595 tail: 0.935985956 dofdiff: 11 chisqdiff: -3.595 taildiff: 1
  64. B:
  65. scale 1.000
  66. EEHG 1.101
  67. WSHG 1.789
  68. PPN -1.055
  69. WEHG 0.204
  70. Anatolia_N -0.962
  71. Iran_GanjDareh_N -0.013
  72. Russia_UstBelaya_Angara 0.939
  73. ONG.SG 0.449
  74. Botai 1.557
  75. CHG -0.015
  76. A:
  77. scale 626.420
  78. Iran_C_HajjiFiruz -0.409
  79. Kyrgyzstan_BA_Aygirdjal 1.354
  80.  
  81.  
  82. full rank
  83. f4info:
  84. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 3.595 taildiff: 0.935985956
  85. B:
  86. scale 1550.796 457.468
  87. EEHG -1.321 1.040
  88. WSHG -1.792 1.780
  89. PPN 0.891 -1.089
  90. WEHG -0.252 0.194
  91. Anatolia_N 1.070 -0.921
  92. Iran_GanjDareh_N -0.171 -0.052
  93. Russia_UstBelaya_Angara -0.709 0.997
  94. ONG.SG -0.227 0.504
  95. Botai -1.558 1.557
  96. CHG -0.173 -0.069
  97. A:
  98. scale 1.414 1.414
  99. Iran_C_HajjiFiruz 1.414 0.000
  100. Kyrgyzstan_BA_Aygirdjal 0.000 1.414
  101.  
  102.  
  103. best coefficients: 0.768 0.232
  104. Jackknife mean: 0.767776318 0.232223682
  105. std. errors: 0.030 0.030
  106.  
  107. error covariance (* 1,000,000)
  108. 918 -918
  109. -918 918
  110.  
  111.  
  112. summ: Iran_IA_HajjiFiruz 2 0.935986 0.768 0.232 918 -918 918
  113.  
  114. fixed pat wt dof chisq tail prob
  115. 00 0 9 3.595 0.935986 0.768 0.232
  116. 01 1 10 57.159 1.24429e-08 1.000 0.000
  117. 10 1 10 429.812 0 0.000 1.000
  118. best pat: 00 0.935986 - -
  119. best pat: 01 1.24429e-08 chi(nested): 53.564 p-value for nested model: 2.50311e-13
  120.  
  121. coeffs: 0.768 0.232
  122.  
  123. ## dscore:: f_4(Base, Fit, Rbase, right2)
  124. ## genstat:: f_4(Base, Fit, right1, right2)
  125.  
  126. details: Iran_C_HajjiFiruz EEHG -0.000852 -2.892329
  127. details: Kyrgyzstan_BA_Aygirdjal EEHG 0.002273 7.194499
  128. dscore: EEHG f4: -0.000126 Z: -0.455300
  129.  
  130. details: Iran_C_HajjiFiruz WSHG -0.001156 -3.439813
  131. details: Kyrgyzstan_BA_Aygirdjal WSHG 0.003891 10.816824
  132. dscore: WSHG f4: 0.000016 Z: 0.049603
  133.  
  134. details: Iran_C_HajjiFiruz PPN 0.000574 1.884235
  135. details: Kyrgyzstan_BA_Aygirdjal PPN -0.002380 -7.601958
  136. dscore: PPN f4: -0.000111 Z: -0.389657
  137.  
  138. details: Iran_C_HajjiFiruz WEHG -0.000163 -0.526544
  139. details: Kyrgyzstan_BA_Aygirdjal WEHG 0.000423 1.311729
  140. dscore: WEHG f4: -0.000027 Z: -0.092395
  141.  
  142. details: Iran_C_HajjiFiruz Anatolia_N 0.000690 2.304774
  143. details: Kyrgyzstan_BA_Aygirdjal Anatolia_N -0.002013 -6.567603
  144. dscore: Anatolia_N f4: 0.000063 Z: 0.221879
  145.  
  146. details: Iran_C_HajjiFiruz Iran_GanjDareh_N -0.000110 -0.380525
  147. details: Kyrgyzstan_BA_Aygirdjal Iran_GanjDareh_N -0.000114 -0.384031
  148. dscore: Iran_GanjDareh_N f4: -0.000111 Z: -0.409465
  149.  
  150. details: Iran_C_HajjiFiruz Russia_UstBelaya_Angara -0.000457 -1.619212
  151. details: Kyrgyzstan_BA_Aygirdjal Russia_UstBelaya_Angara 0.002178 7.146835
  152. dscore: Russia_UstBelaya_Angara f4: 0.000155 Z: 0.581055
  153.  
  154. details: Iran_C_HajjiFiruz ONG.SG -0.000146 -0.511512
  155. details: Kyrgyzstan_BA_Aygirdjal ONG.SG 0.001102 3.726138
  156. dscore: ONG.SG f4: 0.000143 Z: 0.540906
  157.  
  158. details: Iran_C_HajjiFiruz Botai -0.001005 -3.039947
  159. details: Kyrgyzstan_BA_Aygirdjal Botai 0.003403 9.674787
  160. dscore: Botai f4: 0.000018 Z: 0.059179
  161.  
  162. details: Iran_C_HajjiFiruz CHG -0.000112 -0.375429
  163. details: Kyrgyzstan_BA_Aygirdjal CHG -0.000150 -0.510527
  164. dscore: CHG f4: -0.000121 Z: -0.433470
  165.  
  166. gendstat: Cameroon_SMA.DG EEHG -0.455
  167. gendstat: Cameroon_SMA.DG WSHG 0.050
  168. gendstat: Cameroon_SMA.DG PPN -0.390
  169. gendstat: Cameroon_SMA.DG WEHG -0.092
  170. gendstat: Cameroon_SMA.DG Anatolia_N 0.222
  171. gendstat: Cameroon_SMA.DG Iran_GanjDareh_N -0.409
  172. gendstat: Cameroon_SMA.DG Russia_UstBelaya_Angara 0.581
  173. gendstat: Cameroon_SMA.DG ONG.SG 0.541
  174. gendstat: Cameroon_SMA.DG Botai 0.059
  175. gendstat: Cameroon_SMA.DG CHG -0.433
  176. gendstat: EEHG WSHG 0.590
  177. gendstat: EEHG PPN 0.055
  178. gendstat: EEHG WEHG 0.504
  179. gendstat: EEHG Anatolia_N 0.845
  180. gendstat: EEHG Iran_GanjDareh_N 0.062
  181. gendstat: EEHG Russia_UstBelaya_Angara 1.287
  182. gendstat: EEHG ONG.SG 1.089
  183. gendstat: EEHG Botai 0.608
  184. gendstat: EEHG CHG 0.021
  185. gendstat: WSHG PPN -0.392
  186. gendstat: WSHG WEHG -0.163
  187. gendstat: WSHG Anatolia_N 0.162
  188. gendstat: WSHG Iran_GanjDareh_N -0.438
  189. gendstat: WSHG Russia_UstBelaya_Angara 0.544
  190. gendstat: WSHG ONG.SG 0.444
  191. gendstat: WSHG Botai 0.010
  192. gendstat: WSHG CHG -0.441
  193. gendstat: PPN WEHG 0.353
  194. gendstat: PPN Anatolia_N 0.882
  195. gendstat: PPN Iran_GanjDareh_N 0.001
  196. gendstat: PPN Russia_UstBelaya_Angara 0.983
  197. gendstat: PPN ONG.SG 0.895
  198. gendstat: PPN Botai 0.424
  199. gendstat: PPN CHG -0.032
  200. gendstat: WEHG Anatolia_N 0.479
  201. gendstat: WEHG Iran_GanjDareh_N -0.345
  202. gendstat: WEHG Russia_UstBelaya_Angara 0.807
  203. gendstat: WEHG ONG.SG 0.705
  204. gendstat: WEHG Botai 0.181
  205. gendstat: WEHG CHG -0.348
  206. gendstat: Anatolia_N Iran_GanjDareh_N -0.762
  207. gendstat: Anatolia_N Russia_UstBelaya_Angara 0.404
  208. gendstat: Anatolia_N ONG.SG 0.336
  209. gendstat: Anatolia_N Botai -0.161
  210. gendstat: Anatolia_N CHG -0.718
  211. gendstat: Iran_GanjDareh_N Russia_UstBelaya_Angara 1.102
  212. gendstat: Iran_GanjDareh_N ONG.SG 1.035
  213. gendstat: Iran_GanjDareh_N Botai 0.466
  214. gendstat: Iran_GanjDareh_N CHG -0.039
  215. gendstat: Russia_UstBelaya_Angara ONG.SG -0.054
  216. gendstat: Russia_UstBelaya_Angara Botai -0.587
  217. gendstat: Russia_UstBelaya_Angara CHG -1.049
  218. gendstat: ONG.SG Botai -0.473
  219. gendstat: ONG.SG CHG -0.989
  220. gendstat: Botai CHG -0.467
  221.  
  222. ##end of qpAdm: 390.324 seconds cpu 1257.562 Mbytes in use
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