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Legend_9813

Arora-Khatri w/TKM_IA as outgroup

Legend_9813
Jun 28th, 2023
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. indivname: Indian.ind
  5. snpname: Indian.snp
  6. genotypename: Indian.geno
  7. popleft: left
  8. popright: right
  9. inbreed: NO
  10. allsnps: YES
  11. details: YES
  12. ## qpAdm version: 1520
  13. seed: -21792222
  14. inbreed set NO
  15. inbreed set NO
  16. tmp: /tmp/fsx.665
  17.  
  18. left pops:
  19. Arora-Khatri_mix
  20. Indus_Periphery_medAASI
  21. Russia_Andronovo.SG
  22.  
  23. right pops:
  24. Mbuti.DG
  25. EHG
  26. CHG
  27. WSHG
  28. Onge.DG
  29. Turkey_N
  30. Iraq_PPNA
  31. Levant_PPN
  32. CHN_Tarim_EMBA1
  33. Iran_GanjDareh_N
  34. Mongolia_North_N
  35. Serbia_IronGates_Mesolithic
  36. Turkmenistan_IA.SG
  37.  
  38. codimension 1
  39. f4info:
  40. f4rank: 1 dof: 11 chisq: 8.081 tail: 0.706051662 dofdiff: 13 chisqdiff: -8.081 taildiff: 1
  41. B:
  42. scale 1.000
  43. EHG 1.535
  44. CHG 0.564
  45. WSHG 0.964
  46. Onge.DG -0.528
  47. Turkey_N 1.166
  48. Iraq_PPNA 0.496
  49. Levant_PPN 0.991
  50. CHN_Tarim_EMBA1 0.860
  51. Iran_GanjDareh_N -0.238
  52. Mongolia_North_N -0.275
  53. Serbia_IronGates_Mesolithic 1.912
  54. Turkmenistan_IA.SG 1.001
  55. A:
  56. scale 103.779
  57. Indus_Periphery_medAASI -0.442
  58. Russia_Andronovo.SG 1.343
  59.  
  60.  
  61. full rank
  62. f4info:
  63. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 8.081 taildiff: 0.706051662
  64. B:
  65. scale 245.328 74.673
  66. EHG -1.511 1.522
  67. CHG -0.596 0.549
  68. WSHG -0.674 1.024
  69. Onge.DG 0.568 -0.495
  70. Turkey_N -1.163 1.162
  71. Iraq_PPNA -0.250 0.571
  72. Levant_PPN -0.661 1.071
  73. CHN_Tarim_EMBA1 -1.085 0.799
  74. Iran_GanjDareh_N 0.690 -0.118
  75. Mongolia_North_N 0.212 -0.274
  76. Serbia_IronGates_Mesolithic -1.752 1.927
  77. Turkmenistan_IA.SG -1.403 0.909
  78. A:
  79. scale 1.414 1.414
  80. Indus_Periphery_medAASI 1.414 0.000
  81. Russia_Andronovo.SG 0.000 1.414
  82.  
  83.  
  84. best coefficients: 0.752 0.248
  85. totmean: 0.752 0.248
  86. boot mean: 0.753 0.247
  87. std. errors: 0.026 0.026
  88.  
  89. error covariance (* 1,000,000)
  90. 656 -656
  91. -656 656
  92.  
  93.  
  94. summ: Arora-Khatri_mix 2 0.706052 0.753 0.247 656 -656 656
  95.  
  96. fixed pat wt dof chisq tail prob
  97. 00 0 11 8.081 0.706052 0.752 0.248
  98. 01 1 12 88.233 1.08415e-13 1.000 0.000
  99. 10 1 12 677.988 0 0.000 1.000
  100. best pat: 00 0.706052 - -
  101. best pat: 01 1.08415e-13 chi(nested): 80.153 p-value for nested model: 3.46571e-19
  102.  
  103. coeffs: 0.752 0.248
  104.  
  105. ## dscore:: f_4(Base, Fit, Rbase, right2)
  106. ## genstat:: f_4(Base, Fit, right1, right2)
  107.  
  108. details: Indus_Periphery_medAASI EHG -0.006159 -4.130016
  109. details: Russia_Andronovo.SG EHG 0.020384 14.175742
  110. dscore: EHG f4: 0.000411 Z: 0.296218
  111.  
  112. details: Indus_Periphery_medAASI CHG -0.002428 -1.401945
  113. details: Russia_Andronovo.SG CHG 0.007356 4.557995
  114. dscore: CHG f4: -0.000006 Z: -0.003881
  115.  
  116. details: Indus_Periphery_medAASI WSHG -0.002746 -1.532230
  117. details: Russia_Andronovo.SG WSHG 0.013710 7.797914
  118. dscore: WSHG f4: 0.001327 Z: 0.796858
  119.  
  120. details: Indus_Periphery_medAASI Onge.DG 0.002316 1.398499
  121. details: Russia_Andronovo.SG Onge.DG -0.006628 -4.206678
  122. dscore: Onge.DG f4: 0.000102 Z: 0.066978
  123.  
  124. details: Indus_Periphery_medAASI Turkey_N -0.004740 -3.927836
  125. details: Russia_Andronovo.SG Turkey_N 0.015561 13.223081
  126. dscore: Turkey_N f4: 0.000284 Z: 0.254402
  127.  
  128. details: Indus_Periphery_medAASI Iraq_PPNA -0.001018 -0.554285
  129. details: Russia_Andronovo.SG Iraq_PPNA 0.007647 4.345913
  130. dscore: Iraq_PPNA f4: 0.001127 Z: 0.661806
  131.  
  132. details: Indus_Periphery_medAASI Levant_PPN -0.002695 -1.732828
  133. details: Russia_Andronovo.SG Levant_PPN 0.014340 9.273996
  134. dscore: Levant_PPN f4: 0.001521 Z: 1.041850
  135.  
  136. details: Indus_Periphery_medAASI CHN_Tarim_EMBA1 -0.004424 -2.547893
  137. details: Russia_Andronovo.SG CHN_Tarim_EMBA1 0.010698 6.283601
  138. dscore: CHN_Tarim_EMBA1 f4: -0.000681 Z: -0.420300
  139.  
  140. details: Indus_Periphery_medAASI Iran_GanjDareh_N 0.002811 1.939481
  141. details: Russia_Andronovo.SG Iran_GanjDareh_N -0.001580 -1.169962
  142. dscore: Iran_GanjDareh_N f4: 0.001724 Z: 1.287898
  143.  
  144. details: Indus_Periphery_medAASI Mongolia_North_N 0.000863 0.588609
  145. details: Russia_Andronovo.SG Mongolia_North_N -0.003665 -2.430991
  146. dscore: Mongolia_North_N f4: -0.000257 Z: -0.184682
  147.  
  148. details: Indus_Periphery_medAASI Serbia_IronGates_Mesolithic -0.007140 -5.080368
  149. details: Russia_Andronovo.SG Serbia_IronGates_Mesolithic 0.025800 18.594806
  150. dscore: Serbia_IronGates_Mesolithic f4: 0.001013 Z: 0.772358
  151.  
  152. details: Indus_Periphery_medAASI Turkmenistan_IA.SG -0.005717 -3.038419
  153. details: Russia_Andronovo.SG Turkmenistan_IA.SG 0.012179 6.656815
  154. dscore: Turkmenistan_IA.SG f4: -0.001288 Z: -0.741944
  155.  
  156. gendstat: Mbuti.DG EHG 0.296
  157. gendstat: Mbuti.DG CHG -0.004
  158. gendstat: Mbuti.DG WSHG 0.797
  159. gendstat: Mbuti.DG Onge.DG 0.067
  160. gendstat: Mbuti.DG Turkey_N 0.254
  161. gendstat: Mbuti.DG Iraq_PPNA 0.662
  162. gendstat: Mbuti.DG Levant_PPN 1.042
  163. gendstat: Mbuti.DG CHN_Tarim_EMBA1 -0.420
  164. gendstat: Mbuti.DG Iran_GanjDareh_N 1.288
  165. gendstat: Mbuti.DG Mongolia_North_N -0.185
  166. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic 0.772
  167. gendstat: Mbuti.DG Turkmenistan_IA.SG -0.742
  168. gendstat: EHG CHG -0.269
  169. gendstat: EHG WSHG 0.777
  170. gendstat: EHG Onge.DG -0.196
  171. gendstat: EHG Turkey_N -0.115
  172. gendstat: EHG Iraq_PPNA 0.402
  173. gendstat: EHG Levant_PPN 0.755
  174. gendstat: EHG CHN_Tarim_EMBA1 -0.962
  175. gendstat: EHG Iran_GanjDareh_N 0.953
  176. gendstat: EHG Mongolia_North_N -0.477
  177. gendstat: EHG Serbia_IronGates_Mesolithic 0.649
  178. gendstat: EHG Turkmenistan_IA.SG -1.028
  179. gendstat: CHG WSHG 0.731
  180. gendstat: CHG Onge.DG 0.058
  181. gendstat: CHG Turkey_N 0.209
  182. gendstat: CHG Iraq_PPNA 0.600
  183. gendstat: CHG Levant_PPN 0.928
  184. gendstat: CHG CHN_Tarim_EMBA1 -0.387
  185. gendstat: CHG Iran_GanjDareh_N 1.164
  186. gendstat: CHG Mongolia_North_N -0.141
  187. gendstat: CHG Serbia_IronGates_Mesolithic 0.685
  188. gendstat: CHG Turkmenistan_IA.SG -0.678
  189. gendstat: WSHG Onge.DG -0.683
  190. gendstat: WSHG Turkey_N -0.697
  191. gendstat: WSHG Iraq_PPNA -0.102
  192. gendstat: WSHG Levant_PPN 0.111
  193. gendstat: WSHG CHN_Tarim_EMBA1 -1.418
  194. gendstat: WSHG Iran_GanjDareh_N 0.245
  195. gendstat: WSHG Mongolia_North_N -0.932
  196. gendstat: WSHG Serbia_IronGates_Mesolithic -0.218
  197. gendstat: WSHG Turkmenistan_IA.SG -1.349
  198. gendstat: Onge.DG Turkey_N 0.126
  199. gendstat: Onge.DG Iraq_PPNA 0.509
  200. gendstat: Onge.DG Levant_PPN 0.837
  201. gendstat: Onge.DG CHN_Tarim_EMBA1 -0.465
  202. gendstat: Onge.DG Iran_GanjDareh_N 0.968
  203. gendstat: Onge.DG Mongolia_North_N -0.259
  204. gendstat: Onge.DG Serbia_IronGates_Mesolithic 0.606
  205. gendstat: Onge.DG Turkmenistan_IA.SG -0.721
  206. gendstat: Turkey_N Iraq_PPNA 0.546
  207. gendstat: Turkey_N Levant_PPN 1.129
  208. gendstat: Turkey_N CHN_Tarim_EMBA1 -0.662
  209. gendstat: Turkey_N Iran_GanjDareh_N 1.261
  210. gendstat: Turkey_N Mongolia_North_N -0.399
  211. gendstat: Turkey_N Serbia_IronGates_Mesolithic 0.799
  212. gendstat: Turkey_N Turkmenistan_IA.SG -0.994
  213. gendstat: Iraq_PPNA Levant_PPN 0.228
  214. gendstat: Iraq_PPNA CHN_Tarim_EMBA1 -0.924
  215. gendstat: Iraq_PPNA Iran_GanjDareh_N 0.355
  216. gendstat: Iraq_PPNA Mongolia_North_N -0.719
  217. gendstat: Iraq_PPNA Serbia_IronGates_Mesolithic -0.066
  218. gendstat: Iraq_PPNA Turkmenistan_IA.SG -1.195
  219. gendstat: Levant_PPN CHN_Tarim_EMBA1 -1.296
  220. gendstat: Levant_PPN Iran_GanjDareh_N 0.139
  221. gendstat: Levant_PPN Mongolia_North_N -1.071
  222. gendstat: Levant_PPN Serbia_IronGates_Mesolithic -0.370
  223. gendstat: Levant_PPN Turkmenistan_IA.SG -1.526
  224. gendstat: CHN_Tarim_EMBA1 Iran_GanjDareh_N 1.513
  225. gendstat: CHN_Tarim_EMBA1 Mongolia_North_N 0.273
  226. gendstat: CHN_Tarim_EMBA1 Serbia_IronGates_Mesolithic 1.200
  227. gendstat: CHN_Tarim_EMBA1 Turkmenistan_IA.SG -0.337
  228. gendstat: Iran_GanjDareh_N Mongolia_North_N -1.278
  229. gendstat: Iran_GanjDareh_N Serbia_IronGates_Mesolithic -0.534
  230. gendstat: Iran_GanjDareh_N Turkmenistan_IA.SG -1.795
  231. gendstat: Mongolia_North_N Serbia_IronGates_Mesolithic 0.917
  232. gendstat: Mongolia_North_N Turkmenistan_IA.SG -0.560
  233. gendstat: Serbia_IronGates_Mesolithic Turkmenistan_IA.SG -1.373
  234.  
  235. removing /tmp/fsx.665
  236. ##end of qpAdm: 1.262 seconds cpu 0.782 Mbytes in use
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