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Openmrs upgrade error1

jerome24
Nov 18th, 2020
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  1. Nov 18, 2020 1:02:57 PM org.apache.coyote.AbstractProtocol pause
  2. INFO: Pausing ProtocolHandler ["http-bio-8080"]
  3. Nov 18, 2020 1:02:57 PM org.apache.catalina.core.StandardService stopInternal
  4. INFO: Stopping service Catalina
  5. ERROR - Context.getServiceContext(273) |2020-11-18 13:02:57,921| serviceContext is null. Creating new ServiceContext()
  6. WARN - LocaleUtility.getDefaultLocale(73) |2020-11-18 13:02:57,943| Unable to get locale global property value. Service not found: interface org.openmrs.api.AdministrationService
  7. Nov 18, 2020 1:02:57 PM org.apache.catalina.loader.WebappClassLoader clearReferencesJdbc
  8. SEVERE: The web application [/openmrs] registered the JDBC driver [com.mysql.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
  9. Nov 18, 2020 1:02:57 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
  10. SEVERE: The web application [/openmrs] appears to have started a thread named [FileWatchdog] but has failed to stop it. This is very likely to create a memory leak.
  11. Nov 18, 2020 1:02:57 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
  12. SEVERE: The web application [/openmrs] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak.
  13. Nov 18, 2020 1:02:58 PM org.apache.coyote.AbstractProtocol stop
  14. INFO: Stopping ProtocolHandler ["http-bio-8080"]
  15. Nov 18, 2020 1:02:58 PM org.apache.coyote.AbstractProtocol destroy
  16. INFO: Destroying ProtocolHandler ["http-bio-8080"]
  17. OpenJDK 64-Bit Server VM warning: ignoring option PermSize=256m; support was removed in 8.0
  18. OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1024m; support was removed in 8.0
  19. Nov 18, 2020 1:02:59 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
  20. WARNING: Problem with directory [/usr/share/tomcat7/common/classes], exists: [false], isDirectory: [false], canRead: [false]
  21. Nov 18, 2020 1:02:59 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
  22. WARNING: Problem with directory [/usr/share/tomcat7/common], exists: [false], isDirectory: [false], canRead: [false]
  23. Nov 18, 2020 1:02:59 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
  24. WARNING: Problem with directory [/usr/share/tomcat7/server/classes], exists: [false], isDirectory: [false], canRead: [false]
  25. Nov 18, 2020 1:02:59 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
  26. WARNING: Problem with directory [/usr/share/tomcat7/server], exists: [false], isDirectory: [false], canRead: [false]
  27. Nov 18, 2020 1:02:59 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
  28. WARNING: Problem with directory [/usr/share/tomcat7/shared/classes], exists: [false], isDirectory: [false], canRead: [false]
  29. Nov 18, 2020 1:02:59 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
  30. WARNING: Problem with directory [/usr/share/tomcat7/shared], exists: [false], isDirectory: [false], canRead: [false]
  31. Nov 18, 2020 1:03:00 PM org.apache.coyote.AbstractProtocol init
  32. INFO: Initializing ProtocolHandler ["http-bio-8080"]
  33. Nov 18, 2020 1:03:01 PM org.apache.catalina.startup.Catalina load
  34. INFO: Initialization processed in 1165 ms
  35. Nov 18, 2020 1:03:01 PM org.apache.catalina.core.StandardService startInternal
  36. INFO: Starting service Catalina
  37. Nov 18, 2020 1:03:01 PM org.apache.catalina.core.StandardEngine startInternal
  38. INFO: Starting Servlet Engine: Apache Tomcat/7.0.52 (Ubuntu)
  39. Nov 18, 2020 1:03:01 PM org.apache.catalina.startup.HostConfig deployDescriptor
  40. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/manager.xml
  41. Nov 18, 2020 1:03:01 PM org.apache.catalina.startup.HostConfig deployDescriptor
  42. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/host-manager.xml
  43. Nov 18, 2020 1:03:01 PM org.apache.catalina.startup.HostConfig deployWAR
  44. INFO: Deploying web application archive /var/lib/tomcat7/webapps/openmrs.war
  45. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2078) |2020-11-18 13:03:10,109| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  46. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2078) |2020-11-18 13:03:10,135| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  47. INFO - Listener.contextInitialized(173) |2020-11-18 13:03:10,135| Using runtime properties file: /usr/share/tomcat7/.OpenMRS/openmrs-runtime.properties
  48. INFO 11/18/20 1:03 PM:liquibase: Reading from `liquibasechangelog`
  49. WARNING 11/18/20 1:03 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  50. WARNING 11/18/20 1:03 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  51. WARNING 11/18/20 1:03 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  52. INFO 11/18/20 1:03 PM:liquibase: Reading from `liquibasechangelog`
  53. WARNING 11/18/20 1:03 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  54. WARNING 11/18/20 1:03 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  55. WARNING 11/18/20 1:03 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  56. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2078) |2020-11-18 13:03:16,319| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  57. Nov 18, 2020 1:03:16 PM org.apache.catalina.startup.HostConfig deployDirectory
  58. INFO: Deploying web application directory /var/lib/tomcat7/webapps/ROOT
  59. Nov 18, 2020 1:03:16 PM org.apache.coyote.AbstractProtocol start
  60. INFO: Starting ProtocolHandler ["http-bio-8080"]
  61. Nov 18, 2020 1:03:16 PM org.apache.catalina.startup.Catalina start
  62. INFO: Server startup in 15729 ms
  63. ERROR - CommonsLogLogChute.log(96) |2020-11-18 13:03:44,921| #parse() null argument
  64. ERROR - CommonsLogLogChute.log(96) |2020-11-18 13:03:44,962| #parse() null argument
  65. ERROR - CommonsLogLogChute.log(96) |2020-11-18 13:03:55,424| #parse() null argument
  66. ERROR - CommonsLogLogChute.log(96) |2020-11-18 13:03:55,449| #parse() null argument
  67. ERROR - CommonsLogLogChute.log(96) |2020-11-18 13:04:00,809| #parse() null argument
  68. ERROR - CommonsLogLogChute.log(96) |2020-11-18 13:04:00,821| #parse() null argument
  69. INFO 11/18/20 1:04 PM:liquibase: Reading from `liquibasechangelog`
  70. WARNING 11/18/20 1:04 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  71. WARNING 11/18/20 1:04 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  72. WARNING 11/18/20 1:04 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  73. INFO 11/18/20 1:04 PM:liquibase: Successfully acquired change log lock
  74. WARNING 11/18/20 1:04 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  75. WARNING 11/18/20 1:04 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  76. WARNING 11/18/20 1:04 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  77. INFO 11/18/20 1:04 PM:liquibase: Reading from `liquibasechangelog`
  78. INFO 11/18/20 1:04 PM:liquibase: Marking ChangeSet: liquibase-update-to-latest.xml::TRUNK-4976-20170403-1::darius::(Checksum: 3:bc865b90609f6ac5e9cbfee7fc974ed1) ran despite precondition failure due to onFail='MARK_RAN':
  79. liquibase-update-to-latest.xml : Not precondition failed
  80.  
  81.  
  82. ERROR - CommonsLogLogChute.log(96) |2020-11-18 13:45:32,712| #parse() null argument
  83. ERROR - CommonsLogLogChute.log(96) |2020-11-18 13:45:32,713| #parse() null argument
  84. ERROR - CommonsLogLogChute.log(96) |2020-11-18 13:56:26,941| #parse() null argument
  85. ERROR - CommonsLogLogChute.log(96) |2020-11-18 13:56:26,953| #parse() null argument
  86.  
  87. ERROR - CommonsLogLogChute.log(96) |2020-11-18 14:45:50,400| #parse() null argument
  88. ERROR - CommonsLogLogChute.log(96) |2020-11-18 14:45:50,411| #parse() null argument
  89.  
  90.  
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