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jerome24

Openmrs error while upgrading from 2.0.6 to 2.3.2

jerome24
Nov 17th, 2020
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  1. INFO: Starting service Catalina
  2. Nov 17, 2020 5:01:23 PM org.apache.catalina.core.StandardEngine startInternal
  3. INFO: Starting Servlet Engine: Apache Tomcat/7.0.52 (Ubuntu)
  4. Nov 17, 2020 5:01:23 PM org.apache.catalina.startup.HostConfig deployDescriptor
  5. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/manager.xml
  6. Nov 17, 2020 5:01:24 PM org.apache.catalina.startup.HostConfig deployDescriptor
  7. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/host-manager.xml
  8. Nov 17, 2020 5:01:24 PM org.apache.catalina.startup.HostConfig deployWAR
  9. INFO: Deploying web application archive /var/lib/tomcat7/webapps/openmrs.war
  10. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2078) |2020-11-17 17:01:35,920| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  11. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2078) |2020-11-17 17:01:35,987| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  12. INFO - Listener.contextInitialized(173) |2020-11-17 17:01:35,988| Using runtime properties file: /usr/share/tomcat7/.OpenMRS/openmrs-runtime.properties
  13. INFO 11/17/20 5:01 PM:liquibase: Reading from `liquibasechangelog`
  14. WARNING 11/17/20 5:01 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  15. WARNING 11/17/20 5:01 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  16. WARNING 11/17/20 5:01 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  17. INFO 11/17/20 5:01 PM:liquibase: Reading from `liquibasechangelog`
  18. WARNING 11/17/20 5:01 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  19. WARNING 11/17/20 5:01 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  20. WARNING 11/17/20 5:01 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  21. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2078) |2020-11-17 17:01:41,866| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  22. Nov 17, 2020 5:01:42 PM org.apache.catalina.startup.HostConfig deployDirectory
  23. INFO: Deploying web application directory /var/lib/tomcat7/webapps/ROOT
  24. Nov 17, 2020 5:01:42 PM org.apache.coyote.AbstractProtocol start
  25. INFO: Starting ProtocolHandler ["http-bio-8080"]
  26. Nov 17, 2020 5:01:42 PM org.apache.catalina.startup.Catalina start
  27. INFO: Server startup in 18715 ms
  28. ERROR - CommonsLogLogChute.log(96) |2020-11-17 17:03:09,329| #parse() null argument
  29. ERROR - CommonsLogLogChute.log(96) |2020-11-17 17:03:09,382| #parse() null argument
  30. ERROR - CommonsLogLogChute.log(96) |2020-11-17 17:03:22,596| #parse() null argument
  31. ERROR - CommonsLogLogChute.log(96) |2020-11-17 17:03:22,623| #parse() null argument
  32. ERROR - CommonsLogLogChute.log(96) |2020-11-17 17:03:28,079| #parse() null argument
  33. ERROR - CommonsLogLogChute.log(96) |2020-11-17 17:03:28,147| #parse() null argument
  34. INFO 11/17/20 5:03 PM:liquibase: Reading from `liquibasechangelog`
  35. WARNING 11/17/20 5:03 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  36. WARNING 11/17/20 5:03 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  37. WARNING 11/17/20 5:03 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  38. ERROR - DatabaseUpdater.executeChangelog(230) |2020-11-17 17:03:29,832| Could not release lock
  39. liquibase.exception.LockException: liquibase.exception.LockException: Did not update change log lock correctly.
  40.  
  41. 0 rows were updated instead of the expected 1 row using executor liquibase.executor.jvm.JdbcExecutor there are 0 rows in the table
  42. at liquibase.lockservice.LockService.releaseLock(LockService.java:152)
  43. at org.openmrs.util.DatabaseUpdater.executeChangelog(DatabaseUpdater.java:227)
  44. at org.openmrs.util.DatabaseUpdater.executeChangelog(DatabaseUpdater.java:150)
  45. at org.openmrs.web.filter.update.UpdateFilter$UpdateFilterCompletion$1.run(UpdateFilter.java:726)
  46. at java.lang.Thread.run(Thread.java:748)
  47. Caused by: liquibase.exception.LockException: Did not update change log lock correctly.
  48.  
  49. 0 rows were updated instead of the expected 1 row using executor liquibase.executor.jvm.JdbcExecutor there are 0 rows in the table
  50. at liquibase.lockservice.LockService.releaseLock(LockService.java:140)
  51. ... 4 more
  52. ERROR - UpdateFilter$UpdateFilterCompletion$1.run(742) |2020-11-17 17:03:29,839| Unable to update the database
  53. org.openmrs.util.DatabaseUpdateException: There was an error while updating the database to the latest. file: liquibase-update-to-latest.xml. Error: liquibase.exception.DatabaseException: Empty result set, expected one row
  54. at org.openmrs.util.DatabaseUpdater.executeChangelog(DatabaseUpdater.java:154)
  55. at org.openmrs.web.filter.update.UpdateFilter$UpdateFilterCompletion$1.run(UpdateFilter.java:726)
  56. at java.lang.Thread.run(Thread.java:748)
  57. Caused by: liquibase.exception.LockException: liquibase.exception.DatabaseException: Empty result set, expected one row
  58. at liquibase.lockservice.LockService.acquireLock(LockService.java:121)
  59. at liquibase.lockservice.LockService.waitForLock(LockService.java:61)
  60. at org.openmrs.util.DatabaseUpdater.executeChangelog(DatabaseUpdater.java:208)
  61. at org.openmrs.util.DatabaseUpdater.executeChangelog(DatabaseUpdater.java:150)
  62. ... 2 more
  63. Caused by: liquibase.exception.DatabaseException: Empty result set, expected one row
  64. at liquibase.util.JdbcUtils.requiredSingleResult(JdbcUtils.java:124)
  65. at liquibase.executor.jvm.JdbcExecutor.queryForObject(JdbcExecutor.java:159)
  66. at liquibase.executor.jvm.JdbcExecutor.queryForObject(JdbcExecutor.java:167)
  67. at liquibase.executor.jvm.JdbcExecutor.queryForObject(JdbcExecutor.java:163)
  68. at liquibase.lockservice.LockService.acquireLock(LockService.java:96)
  69. ... 5 more
  70. INFO 11/17/20 5:03 PM:liquibase: Reading from `liquibasechangelog`
  71. WARNING 11/17/20 5:03 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  72. WARNING 11/17/20 5:03 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  73. WARNING 11/17/20 5:03 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  74.  
  75.  
  76.  
  77. ERROR - CommonsLogLogChute.log(96) |2020-11-17 17:19:58,815| #parse() null argument
  78. ERROR - CommonsLogLogChute.log(96) |2020-11-17 17:19:58,821| #parse() null argument
  79. INFO 11/17/20 5:19 PM:liquibase: Reading from `liquibasechangelog`
  80. WARNING 11/17/20 5:20 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  81. WARNING 11/17/20 5:20 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  82. WARNING 11/17/20 5:20 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  83. ERROR - DatabaseUpdater.executeChangelog(230) |2020-11-17 17:20:00,296| Could not release lock
  84. liquibase.exception.LockException: liquibase.exception.LockException: Did not update change log lock correctly.
  85.  
  86. 0 rows were updated instead of the expected 1 row using executor liquibase.executor.jvm.JdbcExecutor there are 0 rows in the table
  87. at liquibase.lockservice.LockService.releaseLock(LockService.java:152)
  88. at org.openmrs.util.DatabaseUpdater.executeChangelog(DatabaseUpdater.java:227)
  89. at org.openmrs.util.DatabaseUpdater.executeChangelog(DatabaseUpdater.java:150)
  90. at org.openmrs.web.filter.update.UpdateFilter$UpdateFilterCompletion$1.run(UpdateFilter.java:726)
  91. at java.lang.Thread.run(Thread.java:748)
  92. Caused by: liquibase.exception.LockException: Did not update change log lock correctly.
  93.  
  94. 0 rows were updated instead of the expected 1 row using executor liquibase.executor.jvm.JdbcExecutor there are 0 rows in the table
  95. at liquibase.lockservice.LockService.releaseLock(LockService.java:140)
  96. ... 4 more
  97. ERROR - UpdateFilter$UpdateFilterCompletion$1.run(742) |2020-11-17 17:20:00,298| Unable to update the database
  98. org.openmrs.util.DatabaseUpdateException: There was an error while updating the database to the latest. file: liquibase-update-to-latest.xml. Error: liquibase.exception.DatabaseException: Empty result set, expected one row
  99. at org.openmrs.util.DatabaseUpdater.executeChangelog(DatabaseUpdater.java:154)
  100. at org.openmrs.web.filter.update.UpdateFilter$UpdateFilterCompletion$1.run(UpdateFilter.java:726)
  101. at java.lang.Thread.run(Thread.java:748)
  102. Caused by: liquibase.exception.LockException: liquibase.exception.DatabaseException: Empty result set, expected one row
  103. at liquibase.lockservice.LockService.acquireLock(LockService.java:121)
  104. at liquibase.lockservice.LockService.waitForLock(LockService.java:61)
  105. at org.openmrs.util.DatabaseUpdater.executeChangelog(DatabaseUpdater.java:208)
  106. at org.openmrs.util.DatabaseUpdater.executeChangelog(DatabaseUpdater.java:150)
  107. ... 2 more
  108. Caused by: liquibase.exception.DatabaseException: Empty result set, expected one row
  109. at liquibase.util.JdbcUtils.requiredSingleResult(JdbcUtils.java:124)
  110. at liquibase.executor.jvm.JdbcExecutor.queryForObject(JdbcExecutor.java:159)
  111. at liquibase.executor.jvm.JdbcExecutor.queryForObject(JdbcExecutor.java:167)
  112. at liquibase.executor.jvm.JdbcExecutor.queryForObject(JdbcExecutor.java:163)
  113. at liquibase.lockservice.LockService.acquireLock(LockService.java:96)
  114. ... 5 more
  115. INFO 11/17/20 5:20 PM:liquibase: Reading from `liquibasechangelog`
  116. WARNING 11/17/20 5:20 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  117. WARNING 11/17/20 5:20 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  118. WARNING 11/17/20 5:20 PM:liquibase: modifyDataType will lose primary key/autoincrement/not null settings for mysql. Use <sql> and re-specify all configuration if this is the case
  119.  
  120.  
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