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misnomer001

Udegram krasnoyarsk Gonur Fail

misnomer001
Jan 10th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 810
  3. seed: 1869721541
  4.  
  5. left pops:
  6. Udegram_IA
  7. InPe
  8. Gonur1_BA
  9. Krasnoyarsk_MLBA
  10.  
  11. right pops:
  12. Kazakhstan_Botai.SG
  13. Ganj_Dareh_N
  14. PPN
  15. Anatolia_N
  16. Iberia_MN
  17. Russia_MA1.SG
  18. Georgia_Satsurblia.SG
  19. Kostenki14.SG
  20. Russia_Karelia_HG
  21. Serbia_Iron_Gates_HG
  22. Tyumen_HG
  23. Onge.DG
  24. Russia_Shamanka_EN.SG
  25.  
  26. 0 Udegram_IA 12
  27. 1 InPe 10
  28. 2 Gonur1_BA 18
  29. 3 Krasnoyarsk_MLBA 16
  30. 4 Kazakhstan_Botai.SG 3
  31. 5 Ganj_Dareh_N 7
  32. 6 PPN 8
  33. 7 Anatolia_N 22
  34. 8 Iberia_MN 4
  35. 9 Russia_MA1.SG 1
  36. 10 Georgia_Satsurblia.SG 1
  37. 11 Kostenki14.SG 1
  38. 12 Russia_Karelia_HG 2
  39. 13 Serbia_Iron_Gates_HG 32
  40. 14 Tyumen_HG 2
  41. 15 Onge.DG 2
  42. 16 Russia_Shamanka_EN.SG 10
  43. jackknife block size: 0.050
  44. snps: 1150476 indivs: 151
  45. number of blocks for block jackknife: 552
  46. ## ncols: 1150476
  47. coverage: Udegram_IA 1086384
  48. coverage: InPe 878190
  49. coverage: Gonur1_BA 949932
  50. coverage: Krasnoyarsk_MLBA 1082457
  51. coverage: Kazakhstan_Botai.SG 1149870
  52. coverage: Ganj_Dareh_N 1029695
  53. coverage: PPN 835499
  54. coverage: Anatolia_N 1134099
  55. coverage: Iberia_MN 967760
  56. coverage: Russia_MA1.SG 805960
  57. coverage: Georgia_Satsurblia.SG 801311
  58. coverage: Kostenki14.SG 1048972
  59. coverage: Russia_Karelia_HG 1010733
  60. coverage: Serbia_Iron_Gates_HG 1139259
  61. coverage: Tyumen_HG 807474
  62. coverage: Onge.DG 1120748
  63. coverage: Russia_Shamanka_EN.SG 1149998
  64. dof (jackknife): 468.321
  65. numsnps used: 1150476
  66. codimension 1
  67. f4info:
  68. f4rank: 2 dof: 10 chisq: 26.809 tail: 0.00279195702 dofdiff: 12 chisqdiff: -26.809 taildiff: 1
  69. B:
  70. scale 1.000 1.000
  71. Ganj_Dareh_N 1.907 1.703
  72. PPN 0.128 1.207
  73. Anatolia_N -0.211 1.385
  74. Iberia_MN -0.489 0.963
  75. Russia_MA1.SG 0.329 -0.054
  76. Georgia_Satsurblia.SG 0.887 1.346
  77. Kostenki14.SG 0.453 0.194
  78. Russia_Karelia_HG -0.708 0.161
  79. Serbia_Iron_Gates_HG -1.264 0.479
  80. Tyumen_HG -0.056 -0.208
  81. Onge.DG 1.736 -1.228
  82. Russia_Shamanka_EN.SG 1.358 -1.065
  83. A:
  84. scale 663.627 1179.935
  85. InPe 0.437 -0.086
  86. Gonur1_BA 0.160 1.720
  87. Krasnoyarsk_MLBA -1.668 0.184
  88.  
  89.  
  90. full rank
  91. f4info:
  92. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 26.809 taildiff: 0.00279195702
  93. B:
  94. scale 1.000 1.000 1.000
  95. Ganj_Dareh_N 1.925 1.583 -1.483
  96. PPN 0.146 1.207 -0.223
  97. Anatolia_N -0.208 1.431 -0.394
  98. Iberia_MN -0.476 1.029 0.521
  99. Russia_MA1.SG 0.335 -0.052 0.253
  100. Georgia_Satsurblia.SG 0.864 1.290 -1.485
  101. Kostenki14.SG 0.448 0.184 0.439
  102. Russia_Karelia_HG -0.709 0.214 1.365
  103. Serbia_Iron_Gates_HG -1.266 0.609 1.674
  104. Tyumen_HG -0.043 -0.156 0.681
  105. Onge.DG 1.741 -1.258 1.304
  106. Russia_Shamanka_EN.SG 1.344 -1.099 0.184
  107. A:
  108. scale 682.930 1016.516 3256.286
  109. InPe 0.669 0.304 1.393
  110. Gonur1_BA 0.338 1.659 0.565
  111. Krasnoyarsk_MLBA -1.561 0.392 0.860
  112.  
  113.  
  114. best coefficients: 0.778 0.017 0.205
  115. Jackknife mean: 0.777435882 0.017188137 0.205375981
  116. std. errors: 0.031 0.035 0.016
  117.  
  118. error covariance (* 1000000)
  119. 963 -981 18
  120. -981 1251 -269
  121. 18 -269 251
  122.  
  123.  
  124. summ: Udegram_IA 3 0.002792 0.777 0.017 0.205 963 -981 18 1251 -269 251
  125.  
  126. fixed pat wt dof chisq tail prob
  127. 000 0 10 26.809 0.00279196 0.778 0.017 0.205
  128. 001 1 11 190.527 0 0.865 0.135 -0.000
  129. 010 1 11 27.142 0.00437339 0.791 -0.000 0.209
  130. 100 1 11 788.073 0 0.000 0.842 0.158
  131. 011 2 12 203.009 0 1.000 0.000 -0.000
  132. 101 2 12 852.358 0 0.000 1.000 -0.000
  133. 110 2 12 2179.910 0 0.000 -0.000 1.000
  134. best pat: 000 0.00279196 - -
  135. best pat: 010 0.00437339 chi(nested): 0.333 p-value for nested model: 0.563712
  136. best pat: 011 7.80167e-37 chi(nested): 175.867 p-value for nested model: 3.87246e-40
  137.  
  138. coeffs: 0.778 0.017 0.205
  139.  
  140. ## dscore:: f_4(Base, Fit, Rbase, right2)
  141. ## genstat:: f_4(Base, Fit, right1, right2)
  142.  
  143. details: InPe Ganj_Dareh_N 0.001766 8.292196
  144. details: Gonur1_BA Ganj_Dareh_N 0.003328 16.993481
  145. details: Krasnoyarsk_MLBA Ganj_Dareh_N -0.004161 -20.541218
  146. dscore: Ganj_Dareh_N f4: 0.000575 Z: 3.091383
  147.  
  148. details: InPe PPN 0.000456 1.996450
  149. details: Gonur1_BA PPN 0.002058 9.892744
  150. details: Krasnoyarsk_MLBA PPN 0.000102 0.504341
  151. dscore: PPN f4: 0.000410 Z: 2.071829
  152.  
  153. details: InPe Anatolia_N 0.000131 0.723290
  154. details: Gonur1_BA Anatolia_N 0.002224 12.783871
  155. details: Krasnoyarsk_MLBA Anatolia_N 0.000959 5.083498
  156. dscore: Anatolia_N f4: 0.000336 Z: 2.124245
  157.  
  158. details: InPe Iberia_MN 0.000115 0.591949
  159. details: Gonur1_BA Iberia_MN 0.001594 8.479220
  160. details: Krasnoyarsk_MLBA Iberia_MN 0.001647 8.328738
  161. dscore: Iberia_MN f4: 0.000454 Z: 2.697581
  162.  
  163. details: InPe Russia_MA1.SG 0.000481 2.207553
  164. details: Gonur1_BA Russia_MA1.SG 0.000157 0.822556
  165. details: Krasnoyarsk_MLBA Russia_MA1.SG -0.000699 -3.423215
  166. dscore: Russia_MA1.SG f4: 0.000233 Z: 1.242950
  167.  
  168. details: InPe Georgia_Satsurblia.SG 0.000594 2.498023
  169. details: Gonur1_BA Georgia_Satsurblia.SG 0.002334 11.145800
  170. details: Krasnoyarsk_MLBA Georgia_Satsurblia.SG -0.001863 -8.247412
  171. dscore: Georgia_Satsurblia.SG f4: 0.000119 Z: 0.576728
  172.  
  173. details: InPe Kostenki14.SG 0.000753 3.183616
  174. details: Gonur1_BA Kostenki14.SG 0.000664 2.921574
  175. details: Krasnoyarsk_MLBA Kostenki14.SG -0.000787 -3.244259
  176. dscore: Kostenki14.SG f4: 0.000435 Z: 2.104087
  177.  
  178. details: InPe Russia_Karelia_HG 0.000035 0.163732
  179. details: Gonur1_BA Russia_Karelia_HG 0.000290 1.435961
  180. details: Krasnoyarsk_MLBA Russia_Karelia_HG 0.002131 10.275708
  181. dscore: Russia_Karelia_HG f4: 0.000470 Z: 2.494622
  182.  
  183. details: InPe Serbia_Iron_Gates_HG -0.000303 -1.771012
  184. details: Gonur1_BA Serbia_Iron_Gates_HG 0.000710 4.346311
  185. details: Krasnoyarsk_MLBA Serbia_Iron_Gates_HG 0.003604 19.474101
  186. dscore: Serbia_Iron_Gates_HG f4: 0.000516 Z: 3.431546
  187.  
  188. details: InPe Tyumen_HG 0.000247 1.133199
  189. details: Gonur1_BA Tyumen_HG -0.000126 -0.646571
  190. details: Krasnoyarsk_MLBA Tyumen_HG 0.000249 1.330168
  191. dscore: Tyumen_HG f4: 0.000241 Z: 1.272481
  192.  
  193. details: InPe Onge.DG 0.001945 8.951907
  194. details: Gonur1_BA Onge.DG -0.000923 -4.431120
  195. details: Krasnoyarsk_MLBA Onge.DG -0.004110 -18.459636
  196. dscore: Onge.DG f4: 0.000654 Z: 3.386868
  197.  
  198. details: InPe Russia_Shamanka_EN.SG 0.001123 6.247032
  199. details: Gonur1_BA Russia_Shamanka_EN.SG -0.001045 -6.439215
  200. details: Krasnoyarsk_MLBA Russia_Shamanka_EN.SG -0.003417 -20.206169
  201. dscore: Russia_Shamanka_EN.SG f4: 0.000155 Z: 0.980108
  202.  
  203. gendstat: Kazakhstan_Botai.SG Ganj_Dareh_N 3.091
  204. gendstat: Kazakhstan_Botai.SG PPN 2.072
  205. gendstat: Kazakhstan_Botai.SG Anatolia_N 2.124
  206. gendstat: Kazakhstan_Botai.SG Iberia_MN 2.698
  207. gendstat: Kazakhstan_Botai.SG Russia_MA1.SG 1.243
  208. gendstat: Kazakhstan_Botai.SG Georgia_Satsurblia.SG 0.577
  209. gendstat: Kazakhstan_Botai.SG Kostenki14.SG 2.104
  210. gendstat: Kazakhstan_Botai.SG Russia_Karelia_HG 2.495
  211. gendstat: Kazakhstan_Botai.SG Serbia_Iron_Gates_HG 3.432
  212. gendstat: Kazakhstan_Botai.SG Tyumen_HG 1.272
  213. gendstat: Kazakhstan_Botai.SG Onge.DG 3.387
  214. gendstat: Kazakhstan_Botai.SG Russia_Shamanka_EN.SG 0.980
  215. gendstat: Ganj_Dareh_N PPN -0.882
  216. gendstat: Ganj_Dareh_N Anatolia_N -1.598
  217. gendstat: Ganj_Dareh_N Iberia_MN -0.723
  218. gendstat: Ganj_Dareh_N Russia_MA1.SG -1.516
  219. gendstat: Ganj_Dareh_N Georgia_Satsurblia.SG -2.293
  220. gendstat: Ganj_Dareh_N Kostenki14.SG -0.642
  221. gendstat: Ganj_Dareh_N Russia_Karelia_HG -0.487
  222. gendstat: Ganj_Dareh_N Serbia_Iron_Gates_HG -0.338
  223. gendstat: Ganj_Dareh_N Tyumen_HG -1.483
  224. gendstat: Ganj_Dareh_N Onge.DG 0.407
  225. gendstat: Ganj_Dareh_N Russia_Shamanka_EN.SG -2.261
  226. gendstat: PPN Anatolia_N -0.547
  227. gendstat: PPN Iberia_MN 0.276
  228. gendstat: PPN Russia_MA1.SG -0.727
  229. gendstat: PPN Georgia_Satsurblia.SG -1.333
  230. gendstat: PPN Kostenki14.SG 0.112
  231. gendstat: PPN Russia_Karelia_HG 0.267
  232. gendstat: PPN Serbia_Iron_Gates_HG 0.615
  233. gendstat: PPN Tyumen_HG -0.686
  234. gendstat: PPN Onge.DG 1.142
  235. gendstat: PPN Russia_Shamanka_EN.SG -1.289
  236. gendstat: Anatolia_N Iberia_MN 1.011
  237. gendstat: Anatolia_N Russia_MA1.SG -0.500
  238. gendstat: Anatolia_N Georgia_Satsurblia.SG -1.168
  239. gendstat: Anatolia_N Kostenki14.SG 0.527
  240. gendstat: Anatolia_N Russia_Karelia_HG 0.696
  241. gendstat: Anatolia_N Serbia_Iron_Gates_HG 1.527
  242. gendstat: Anatolia_N Tyumen_HG -0.439
  243. gendstat: Anatolia_N Onge.DG 1.808
  244. gendstat: Anatolia_N Russia_Shamanka_EN.SG -1.160
  245. gendstat: Iberia_MN Russia_MA1.SG -1.030
  246. gendstat: Iberia_MN Georgia_Satsurblia.SG -1.567
  247. gendstat: Iberia_MN Kostenki14.SG -0.094
  248. gendstat: Iberia_MN Russia_Karelia_HG 0.075
  249. gendstat: Iberia_MN Serbia_Iron_Gates_HG 0.472
  250. gendstat: Iberia_MN Tyumen_HG -0.932
  251. gendstat: Iberia_MN Onge.DG 1.009
  252. gendstat: Iberia_MN Russia_Shamanka_EN.SG -1.706
  253. gendstat: Russia_MA1.SG Georgia_Satsurblia.SG -0.457
  254. gendstat: Russia_MA1.SG Kostenki14.SG 0.838
  255. gendstat: Russia_MA1.SG Russia_Karelia_HG 0.999
  256. gendstat: Russia_MA1.SG Serbia_Iron_Gates_HG 1.457
  257. gendstat: Russia_MA1.SG Tyumen_HG 0.033
  258. gendstat: Russia_MA1.SG Onge.DG 1.857
  259. gendstat: Russia_MA1.SG Russia_Shamanka_EN.SG -0.370
  260. gendstat: Georgia_Satsurblia.SG Kostenki14.SG 1.309
  261. gendstat: Georgia_Satsurblia.SG Russia_Karelia_HG 1.459
  262. gendstat: Georgia_Satsurblia.SG Serbia_Iron_Gates_HG 1.966
  263. gendstat: Georgia_Satsurblia.SG Tyumen_HG 0.502
  264. gendstat: Georgia_Satsurblia.SG Onge.DG 2.360
  265. gendstat: Georgia_Satsurblia.SG Russia_Shamanka_EN.SG 0.170
  266. gendstat: Kostenki14.SG Russia_Karelia_HG 0.151
  267. gendstat: Kostenki14.SG Serbia_Iron_Gates_HG 0.426
  268. gendstat: Kostenki14.SG Tyumen_HG -0.754
  269. gendstat: Kostenki14.SG Onge.DG 0.985
  270. gendstat: Kostenki14.SG Russia_Shamanka_EN.SG -1.353
  271. gendstat: Russia_Karelia_HG Serbia_Iron_Gates_HG 0.261
  272. gendstat: Russia_Karelia_HG Tyumen_HG -0.979
  273. gendstat: Russia_Karelia_HG Onge.DG 0.822
  274. gendstat: Russia_Karelia_HG Russia_Shamanka_EN.SG -1.520
  275. gendstat: Serbia_Iron_Gates_HG Tyumen_HG -1.332
  276. gendstat: Serbia_Iron_Gates_HG Onge.DG 0.742
  277. gendstat: Serbia_Iron_Gates_HG Russia_Shamanka_EN.SG -2.231
  278. gendstat: Tyumen_HG Onge.DG 1.696
  279. gendstat: Tyumen_HG Russia_Shamanka_EN.SG -0.402
  280. gendstat: Onge.DG Russia_Shamanka_EN.SG -3.142
  281.  
  282. ## end of run
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