API tools faq
paste
Legend_9813

Kapu_static qpAdm

Legend_9813
Jan 14th, 2023
291
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 9.13 KB | None | 0 0
raw download clone embed print report
  1. qpAdm: parameter file: param
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. fstatsname: fstats
  5. popleft: left
  6. popright: right
  7. details: YES
  8. ## qpAdm version: 1520
  9. seed: -23208889
  10. *** recommended that inbreed be explicitly set ***
  11. inbreed set NO
  12.  
  13. left pops:
  14. Kapu.DG
  15. Onge.DG
  16. Turkmenistan_Gonur2_BA
  17. Central_Steppe_MLBA
  18.  
  19. right pops:
  20. Mbuti.DG
  21. EHG
  22. CHG
  23. WSHG
  24. China_Tianyuan
  25. Turkey_N
  26. China_Xinjiang_Xiaohe_BA
  27. Iran_GanjDareh_N
  28. Russia_Shamanka_EN
  29. Serbia_IronGates_Mesolithic
  30.  
  31. codimension 1
  32. f4info:
  33. f4rank: 2 dof: 7 chisq: 5.147 tail: 0.642027678 dofdiff: 9 chisqdiff: -5.147 taildiff: 1
  34. B:
  35. scale 1.000 1.000
  36. EHG 1.323 0.762
  37. CHG 0.914 -1.100
  38. WSHG 1.071 0.413
  39. China_Tianyuan -0.461 0.957
  40. Turkey_N 1.240 0.199
  41. China_Xinjiang_Xiaohe_BA 0.851 0.145
  42. Iran_GanjDareh_N 0.727 -1.898
  43. Russia_Shamanka_EN -0.437 0.795
  44. Serbia_IronGates_Mesolithic 1.439 1.353
  45. A:
  46. scale 214.691 804.822
  47. Onge.DG -0.745 1.111
  48. Turkmenistan_Gonur2_BA 0.460 -1.131
  49. Central_Steppe_MLBA 1.495 0.697
  50.  
  51.  
  52. full rank
  53. f4info:
  54. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 7 chisqdiff: 5.147 taildiff: 0.642027678
  55. B:
  56. scale 266.535 421.953 141.912
  57. EHG -0.966 0.684 1.397
  58. CHG -1.377 1.241 0.735
  59. WSHG -0.813 0.752 1.123
  60. China_Tianyuan 0.791 -1.022 -0.330
  61. Turkey_N -1.084 0.965 1.249
  62. China_Xinjiang_Xiaohe_BA -0.728 0.662 0.867
  63. Iran_GanjDareh_N -1.394 1.706 0.481
  64. Russia_Shamanka_EN 0.659 -0.980 -0.343
  65. Serbia_IronGates_Mesolithic -0.896 0.377 1.574
  66. A:
  67. scale 1.732 1.732 1.732
  68. Onge.DG 1.732 0.000 0.000
  69. Turkmenistan_Gonur2_BA 0.000 1.732 0.000
  70. Central_Steppe_MLBA 0.000 0.000 1.732
  71.  
  72.  
  73. best coefficients: 0.445 0.482 0.073
  74. totmean: 0.445 0.482 0.073
  75. boot mean: 0.445 0.482 0.073
  76. std. errors: 0.019 0.032 0.021
  77.  
  78. error covariance (* 1,000,000)
  79. 363 -460 97
  80. -460 994 -534
  81. 97 -534 438
  82.  
  83.  
  84. summ: Kapu.DG 3 0.642028 0.445 0.482 0.073 363 -460 97 994 -534 ...
  85. 438
  86.  
  87. fixed pat wt dof chisq tail prob
  88. 000 0 7 5.147 0.642028 0.445 0.482 0.073
  89. 001 1 8 16.685 0.0335661 0.431 0.569 0.000
  90. 010 1 8 235.555 0 0.676 0.000 0.324
  91. 100 1 8 282.499 0 0.000 1.198 -0.198 infeasible
  92. 011 2 9 629.097 0 1.000 0.000 0.000
  93. 101 2 9 333.905 0 0.000 1.000 0.000
  94. 110 2 9 3193.599 0 0.000 0.000 1.000
  95. best pat: 000 0.642028 - -
  96. best pat: 001 0.0335661 chi(nested): 11.538 p-value for nested model: 0.000682032
  97. best pat: 101 1.64473e-66 chi(nested): 317.220 p-value for nested model: 5.84033e-71
  98.  
  99. coeffs: 0.445 0.482 0.073
  100.  
  101. ## dscore:: f_4(Base, Fit, Rbase, right2)
  102. ## genstat:: f_4(Base, Fit, right1, right2)
  103.  
  104. details: Onge.DG EHG -0.003623 -8.743428
  105. details: Turkmenistan_Gonur2_BA EHG 0.001620 3.761202
  106. details: Central_Steppe_MLBA EHG 0.009844 31.332520
  107. dscore: EHG f4: -0.000108 Z: -0.322695
  108.  
  109. details: Onge.DG CHG -0.005165 -12.701292
  110. details: Turkmenistan_Gonur2_BA CHG 0.002940 6.351433
  111. details: Central_Steppe_MLBA CHG 0.005181 15.844812
  112. dscore: CHG f4: -0.000500 Z: -1.466634
  113.  
  114. details: Onge.DG WSHG -0.003050 -7.231723
  115. details: Turkmenistan_Gonur2_BA WSHG 0.001781 3.867206
  116. details: Central_Steppe_MLBA WSHG 0.007914 23.354951
  117. dscore: WSHG f4: 0.000082 Z: 0.237192
  118.  
  119. details: Onge.DG China_Tianyuan 0.002968 5.843660
  120. details: Turkmenistan_Gonur2_BA China_Tianyuan -0.002422 -4.677165
  121. details: Central_Steppe_MLBA China_Tianyuan -0.002328 -6.399211
  122. dscore: China_Tianyuan f4: -0.000018 Z: -0.044574
  123.  
  124. details: Onge.DG Turkey_N -0.004065 -12.131370
  125. details: Turkmenistan_Gonur2_BA Turkey_N 0.002287 6.750918
  126. details: Central_Steppe_MLBA Turkey_N 0.008800 35.238052
  127. dscore: Turkey_N f4: -0.000060 Z: -0.230933
  128.  
  129. details: Onge.DG China_Xinjiang_Xiaohe_BA -0.002731 -6.546623
  130. details: Turkmenistan_Gonur2_BA China_Xinjiang_Xiaohe_BA 0.001569 3.640185
  131. details: Central_Steppe_MLBA China_Xinjiang_Xiaohe_BA 0.006107 18.229295
  132. dscore: China_Xinjiang_Xiaohe_BA f4: -0.000011 Z: -0.032170
  133.  
  134. details: Onge.DG Iran_GanjDareh_N -0.005232 -15.105672
  135. details: Turkmenistan_Gonur2_BA Iran_GanjDareh_N 0.004043 10.341025
  136. details: Central_Steppe_MLBA Iran_GanjDareh_N 0.003388 12.301353
  137. dscore: Iran_GanjDareh_N f4: -0.000130 Z: -0.450746
  138.  
  139. details: Onge.DG Russia_Shamanka_EN 0.002473 6.839122
  140. details: Turkmenistan_Gonur2_BA Russia_Shamanka_EN -0.002323 -5.955392
  141. details: Central_Steppe_MLBA Russia_Shamanka_EN -0.002415 -8.666240
  142. dscore: Russia_Shamanka_EN f4: -0.000197 Z: -0.677098
  143.  
  144. details: Onge.DG Serbia_IronGates_Mesolithic -0.003362 -9.173698
  145. details: Turkmenistan_Gonur2_BA Serbia_IronGates_Mesolithic 0.000894 2.402687
  146. details: Central_Steppe_MLBA Serbia_IronGates_Mesolithic 0.011092 39.635266
  147. dscore: Serbia_IronGates_Mesolithic f4: -0.000250 Z: -0.850320
  148.  
  149. gendstat: Mbuti.DG EHG -0.323
  150. gendstat: Mbuti.DG CHG -1.467
  151. gendstat: Mbuti.DG WSHG 0.237
  152. gendstat: Mbuti.DG China_Tianyuan -0.045
  153. gendstat: Mbuti.DG Turkey_N -0.231
  154. gendstat: Mbuti.DG China_Xinjiang_Xiaohe_BA -0.032
  155. gendstat: Mbuti.DG Iran_GanjDareh_N -0.451
  156. gendstat: Mbuti.DG Russia_Shamanka_EN -0.677
  157. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -0.850
  158. gendstat: EHG CHG -1.113
  159. gendstat: EHG WSHG 0.622
  160. gendstat: EHG China_Tianyuan 0.208
  161. gendstat: EHG Turkey_N 0.177
  162. gendstat: EHG China_Xinjiang_Xiaohe_BA 0.335
  163. gendstat: EHG Iran_GanjDareh_N -0.071
  164. gendstat: EHG Russia_Shamanka_EN -0.280
  165. gendstat: EHG Serbia_IronGates_Mesolithic -0.574
  166. gendstat: CHG WSHG 1.523
  167. gendstat: CHG China_Tianyuan 1.071
  168. gendstat: CHG Turkey_N 1.563
  169. gendstat: CHG China_Xinjiang_Xiaohe_BA 1.311
  170. gendstat: CHG Iran_GanjDareh_N 1.211
  171. gendstat: CHG Russia_Shamanka_EN 0.857
  172. gendstat: CHG Serbia_IronGates_Mesolithic 0.790
  173. gendstat: WSHG China_Tianyuan -0.223
  174. gendstat: WSHG Turkey_N -0.472
  175. gendstat: WSHG China_Xinjiang_Xiaohe_BA -0.320
  176. gendstat: WSHG Iran_GanjDareh_N -0.633
  177. gendstat: WSHG Russia_Shamanka_EN -0.867
  178. gendstat: WSHG Serbia_IronGates_Mesolithic -1.083
  179. gendstat: China_Tianyuan Turkey_N -0.106
  180. gendstat: China_Tianyuan China_Xinjiang_Xiaohe_BA 0.017
  181. gendstat: China_Tianyuan Iran_GanjDareh_N -0.268
  182. gendstat: China_Tianyuan Russia_Shamanka_EN -0.489
  183. gendstat: China_Tianyuan Serbia_IronGates_Mesolithic -0.564
  184. gendstat: Turkey_N China_Xinjiang_Xiaohe_BA 0.163
  185. gendstat: Turkey_N Iran_GanjDareh_N -0.306
  186. gendstat: Turkey_N Russia_Shamanka_EN -0.503
  187. gendstat: Turkey_N Serbia_IronGates_Mesolithic -1.040
  188. gendstat: China_Xinjiang_Xiaohe_BA Iran_GanjDareh_N -0.376
  189. gendstat: China_Xinjiang_Xiaohe_BA Russia_Shamanka_EN -0.615
  190. gendstat: China_Xinjiang_Xiaohe_BA Serbia_IronGates_Mesolithic -0.784
  191. gendstat: Iran_GanjDareh_N Russia_Shamanka_EN -0.221
  192. gendstat: Iran_GanjDareh_N Serbia_IronGates_Mesolithic -0.437
  193. gendstat: Russia_Shamanka_EN Serbia_IronGates_Mesolithic -0.186
  194.  
  195. ##end of qpAdm: 3.253 seconds cpu 0.807 Mbytes in use
Advertisement
Add Comment
Please, Sign In to add comment
Public Pastes
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!