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- // ask user to select a folder
- dir = getDirectory("Select A folder");
- // get the list of files (& folders) in it
- fileList = getFileList(dir);
- // prepare a folder to output the images
- output_dir = dir + File.separator + " output" + File.separator ;
- File.makeDirectory(output_dir);
- //activate batch mode
- setBatchMode(true);
- // LOOP to process the list of files
- for (i = 0; i < lengthOf(fileList); i++) {
- // define the "path"
- // by concatenation of dir and the i element of the array fileList
- current_imagePath = dir+fileList[i];
- // check that the currentFile is not a directory
- if (!File.isDirectory(current_imagePath)){
- // open the image and split
- open(current_imagePath);
- // get some info about the image
- getDimensions(width, height, channels, slices, frames);
- // if it's a multi channel image
- if (channels > 1) run("Split Channels");
- // now we save all the generated images as tif in the output_dir
- ch_nbr = nImages ;
- for ( c = 1 ; c <= ch_nbr ; c++){
- selectImage(c);
- currentImage_name = getTitle();
- saveAs("tiff", output_dir+currentImage_name);
- }
- // make sure to close every images befores opening the next one
- run("Close All");
- }
- }
- setBatchMode(false);
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