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Jun 19th, 2019
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  1. dataWO <- data %>%
  2. filter(Species == "QUGA") %>%
  3. filter(!is.na(BAI_avg))
  4.  
  5. # unstandardized
  6. dataWO_n <- dataWO
  7.  
  8. # standardize variables
  9. dataWO$DBH <- arm::rescale(dataWO$DBH)
  10. dataWO$H_14m_all <- arm::rescale(dataWO$H_14m_all)
  11. dataWO$H_14m_DF <- arm::rescale(dataWO$H_14m_DF)
  12. dataWO$H_14m_nDF <- arm::rescale(dataWO$H_14m_nDF)
  13. dataWO$H_12m_all <- arm::rescale(dataWO$H_12m_all)
  14. dataWO$H_12m_DF <- arm::rescale(dataWO$H_12m_DF)
  15. dataWO$H_12m_nDF <- arm::rescale(dataWO$H_12m_nDF)
  16. dataWO$DF_shade <- arm::rescale(dataWO$DF_shade)
  17. dataWO$nDF_shade <- arm::rescale(dataWO$nDF_shade)
  18.  
  19. M3_B_WO.17 <- lme(fixed = log(BAI_avg) ~ DBH + H_14m_nDF + DF_shade, data=dataWO, random = ~ 1|Plot_No)
  20. AICc(M3_B_WO.17)
  21.  
  22. ## [1] 174.8177
  23.  
  24. M3_B_WO.17_n <- lme(fixed = log(BAI_avg) ~ DBH + H_14m_nDF + DF_shade, data=dataWO_n, random = ~ 1|Plot_No)
  25. AICc(M3_B_WO.17_n)
  26.  
  27. ## [1] 184.1404
  28.  
  29. M3_B_WO.31 <- lme(fixed = log(BAI_avg) ~ DBH + H_12m_DF + H_14m_nDF, data=dataWO, random = ~ 1|Plot_No)
  30. AICc(M3_B_WO.31)
  31.  
  32. ## [1] 178.2103
  33.  
  34. M3_B_WO.31_n <- lme(fixed = log(BAI_avg) ~ DBH + H_12m_DF + H_14m_nDF, data=dataWO_n, random = ~ 1|Plot_No)
  35. AICc(M3_B_WO.31_n)
  36.  
  37. ## [1] 191.7922
  38.  
  39. M3_B_WO.71 <- lme(fixed = log(BAI_avg) ~ DBH + H_14m_all, data=dataWO, random = ~ 1|Plot_No)
  40. AICc(M3_B_WO.71)
  41.  
  42. ## [1] 179.2528
  43.  
  44. M3_B_WO.71_n <- lme(fixed = log(BAI_avg) ~ DBH + H_14m_all, data=dataWO_n, random = ~ 1|Plot_No)
  45. AICc(M3_B_WO.71_n)
  46.  
  47. ## [1] 190.5091
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