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misnomer001

sarazm with tutkaul

misnomer001
Dec 25th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. fstatsname: ttkfstats2.txt
  5. popleft: left
  6. popright: right
  7. details: YES
  8. ## qpAdm version: 1520
  9. seed: 1940564394
  10. *** recommended that inbreed be explicitly set ***
  11. inbreed set NO
  12.  
  13. left pops:
  14. Tajikistan_C_Sarazm
  15. Tutkaul
  16. CHG_Kotias
  17. Iran_GanjDareh_N
  18. Turkey_N
  19.  
  20. right pops:
  21. Mbuti.DG
  22. Armenia_Aknashen_N
  23. China_Xinjiang_Xiaohe_BA
  24. EHG
  25. PPNB
  26. Russia_Steppe_Eneolithic
  27. Serbia_IronGates_Mesolithic
  28. Turkmenistan_C_TepeAnau
  29. ONG.SG
  30. Russia_AfontovaGora3
  31. Turkey_Epipaleolithic
  32. CHG_Satsurblia
  33.  
  34. codimension 1
  35. f4info:
  36. f4rank: 3 dof: 8 chisq: 11.919 tail: 0.154834774 dofdiff: 10 chisqdiff: -11.919 taildiff: 1
  37. B:
  38. scale 1.000 1.000 1.000
  39. Armenia_Aknashen_N -0.225 0.546 0.494
  40. China_Xinjiang_Xiaohe_BA 2.171 0.059 -0.194
  41. EHG 1.117 0.576 0.253
  42. PPNB -0.448 1.794 -0.233
  43. Russia_Steppe_Eneolithic 0.685 0.042 0.757
  44. Serbia_IronGates_Mesolithic 0.195 1.206 0.321
  45. Turkmenistan_C_TepeAnau 0.142 -0.732 -0.270
  46. ONG.SG 0.342 0.065 0.072
  47. Russia_AfontovaGora3 1.963 0.062 -0.332
  48. Turkey_Epipaleolithic -0.535 2.215 -0.030
  49. CHG_Satsurblia -0.028 -0.492 3.120
  50. A:
  51. scale 208.621 390.447 650.012
  52. Tutkaul 1.715 0.820 0.044
  53. CHG_Kotias -0.430 0.135 1.973
  54. Iran_GanjDareh_N -0.594 -0.446 -0.319
  55. Turkey_N -0.723 1.764 -0.072
  56.  
  57.  
  58. full rank
  59. f4info:
  60. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 8 chisqdiff: 11.919 taildiff: 0.154834774
  61. B:
  62. scale 119.308 265.831 314.570 168.933
  63. Armenia_Aknashen_N -0.239 0.332 -0.438 0.393
  64. China_Xinjiang_Xiaohe_BA 2.121 -1.393 -2.054 -1.253
  65. EHG 1.260 -0.386 -1.303 -0.220
  66. PPNB 0.038 0.293 -0.216 1.648
  67. Russia_Steppe_Eneolithic 0.640 0.134 -0.916 -0.420
  68. Serbia_IronGates_Mesolithic 0.467 0.179 -0.794 0.764
  69. Turkmenistan_C_TepeAnau -0.072 -0.409 0.069 -0.666
  70. ONG.SG 0.303 -0.188 -0.482 -0.194
  71. Russia_AfontovaGora3 2.031 -1.265 -1.702 -1.068
  72. Turkey_Epipaleolithic 0.018 0.474 -0.415 1.996
  73. CHG_Satsurblia -0.078 2.576 -0.261 -0.383
  74. A:
  75. scale 2.000 2.000 2.000 2.000
  76. Tutkaul 2.000 0.000 0.000 0.000
  77. CHG_Kotias 0.000 2.000 0.000 0.000
  78. Iran_GanjDareh_N 0.000 0.000 2.000 0.000
  79. Turkey_N 0.000 0.000 0.000 2.000
  80.  
  81.  
  82. best coefficients: 0.252 0.096 0.620 0.032
  83. totmean: 0.252 0.096 0.620 0.032
  84. boot mean: 0.252 0.096 0.620 0.032
  85. std. errors: 0.015 0.038 0.038 0.020
  86.  
  87. error covariance (* 1,000,000)
  88. 213 -64 -186 38
  89. -64 1462 -1124 -275
  90. -186 -1124 1464 -154
  91. 38 -275 -154 391
  92.  
  93.  
  94. summ: Tajikistan_C_Sarazm 4 0.154835 0.252 0.096 0.620 0.032 213 -64 -186 38 1462 ...
  95. -1124 -275 1464 -154 391
  96.  
  97. fixed pat wt dof chisq tail prob
  98. 0000 0 8 11.919 0.154835 0.252 0.096 0.620 0.032
  99. 0001 1 9 16.401 0.0589621 0.247 0.115 0.637 0.000
  100. 0010 1 9 208.902 0 0.281 0.682 0.000 0.037
  101. 0100 1 9 18.337 0.0314617 0.259 0.000 0.693 0.048
  102. 1000 1 9 286.629 0 0.000 0.083 0.978 -0.061 infeasible
  103. 0011 2 10 211.996 0 0.273 0.727 0.000 0.000
  104. 0101 2 10 26.539 0.00307926 0.252 0.000 0.748 0.000
  105. 0110 2 10 702.603 0 0.590 0.000 0.000 0.410
  106. 1001 2 10 647.043 0 0.000 -0.229 1.229 0.000 infeasible
  107. 1010 2 10 365.045 0 0.000 1.193 0.000 -0.193 infeasible
  108. 1100 2 10 288.296 0 0.000 0.000 1.048 -0.048 infeasible
  109. 0111 3 11 1161.436 0 1.000 0.000 0.000 0.000
  110. 1011 3 11 394.520 0 0.000 1.000 0.000 0.000
  111. 1101 3 11 293.793 0 0.000 0.000 1.000 0.000
  112. 1110 3 11 2500.983 0 0.000 0.000 0.000 1.000
  113. best pat: 0000 0.154835 - -
  114. best pat: 0001 0.0589621 chi(nested): 4.482 p-value for nested model: 0.0342588
  115. best pat: 0101 0.00307926 chi(nested): 10.138 p-value for nested model: 0.00145273
  116. best pat: 1101 1.77762e-56 chi(nested): 267.254 p-value for nested model: 4.50221e-60
  117.  
  118. coeffs: 0.252 0.096 0.620 0.032
  119.  
  120. ## dscore:: f_4(Base, Fit, Rbase, right2)
  121. ## genstat:: f_4(Base, Fit, right1, right2)
  122.  
  123. details: Tutkaul Armenia_Aknashen_N -0.002004 -2.130058
  124. details: CHG_Kotias Armenia_Aknashen_N 0.001250 1.684818
  125. details: Iran_GanjDareh_N Armenia_Aknashen_N -0.001394 -2.360664
  126. details: Turkey_N Armenia_Aknashen_N 0.002329 4.128953
  127. dscore: Armenia_Aknashen_N f4: -0.001174 Z: -2.093963
  128.  
  129. details: Tutkaul China_Xinjiang_Xiaohe_BA 0.017773 27.201752
  130. details: CHG_Kotias China_Xinjiang_Xiaohe_BA -0.005239 -9.641628
  131. details: Iran_GanjDareh_N China_Xinjiang_Xiaohe_BA -0.006529 -14.444709
  132. details: Turkey_N China_Xinjiang_Xiaohe_BA -0.007415 -17.701397
  133. dscore: China_Xinjiang_Xiaohe_BA f4: -0.000301 Z: -0.722363
  134.  
  135. details: Tutkaul EHG 0.010559 17.565201
  136. details: CHG_Kotias EHG -0.001453 -2.676714
  137. details: Iran_GanjDareh_N EHG -0.004143 -9.851146
  138. details: Turkey_N EHG -0.001304 -3.333537
  139. dscore: EHG f4: -0.000084 Z: -0.216285
  140.  
  141. details: Tutkaul PPNB 0.000315 0.542438
  142. details: CHG_Kotias PPNB 0.001103 2.228129
  143. details: Iran_GanjDareh_N PPNB -0.000687 -1.742260
  144. details: Turkey_N PPNB 0.009754 26.093478
  145. dscore: PPNB f4: 0.000073 Z: 0.197764
  146.  
  147. details: Tutkaul Russia_Steppe_Eneolithic 0.005368 9.997897
  148. details: CHG_Kotias Russia_Steppe_Eneolithic 0.000506 1.068625
  149. details: Iran_GanjDareh_N Russia_Steppe_Eneolithic -0.002911 -7.703396
  150. details: Turkey_N Russia_Steppe_Eneolithic -0.002486 -7.331896
  151. dscore: Russia_Steppe_Eneolithic f4: -0.000481 Z: -1.380841
  152.  
  153. details: Tutkaul Serbia_IronGates_Mesolithic 0.003911 8.139305
  154. details: CHG_Kotias Serbia_IronGates_Mesolithic 0.000673 1.513247
  155. details: Iran_GanjDareh_N Serbia_IronGates_Mesolithic -0.002526 -7.411095
  156. details: Turkey_N Serbia_IronGates_Mesolithic 0.004523 14.171746
  157. dscore: Serbia_IronGates_Mesolithic f4: -0.000368 Z: -1.183434
  158.  
  159. details: Tutkaul Turkmenistan_C_TepeAnau -0.000600 -1.055056
  160. details: CHG_Kotias Turkmenistan_C_TepeAnau -0.001538 -3.216433
  161. details: Iran_GanjDareh_N Turkmenistan_C_TepeAnau 0.000218 0.586041
  162. details: Turkey_N Turkmenistan_C_TepeAnau -0.003943 -11.181386
  163. dscore: Turkmenistan_C_TepeAnau f4: -0.000290 Z: -0.814008
  164.  
  165. details: Tutkaul ONG.SG 0.002538 4.315149
  166. details: CHG_Kotias ONG.SG -0.000706 -1.536363
  167. details: Iran_GanjDareh_N ONG.SG -0.001531 -3.981501
  168. details: Turkey_N ONG.SG -0.001146 -3.200172
  169. dscore: ONG.SG f4: -0.000413 Z: -1.116916
  170.  
  171. details: Tutkaul Russia_AfontovaGora3 0.017027 15.984906
  172. details: CHG_Kotias Russia_AfontovaGora3 -0.004759 -6.507845
  173. details: Iran_GanjDareh_N Russia_AfontovaGora3 -0.005410 -8.857662
  174. details: Turkey_N Russia_AfontovaGora3 -0.006321 -11.141340
  175. dscore: Russia_AfontovaGora3 f4: 0.000285 Z: 0.478769
  176.  
  177. details: Tutkaul Turkey_Epipaleolithic 0.000152 0.205186
  178. details: CHG_Kotias Turkey_Epipaleolithic 0.001781 2.906973
  179. details: Iran_GanjDareh_N Turkey_Epipaleolithic -0.001320 -2.790799
  180. details: Turkey_N Turkey_Epipaleolithic 0.011814 25.470712
  181. dscore: Turkey_Epipaleolithic f4: -0.000230 Z: -0.511774
  182.  
  183. details: Tutkaul CHG_Satsurblia -0.000650 -0.799063
  184. details: CHG_Kotias CHG_Satsurblia 0.009692 13.145983
  185. details: Iran_GanjDareh_N CHG_Satsurblia -0.000831 -1.595997
  186. details: Turkey_N CHG_Satsurblia -0.002270 -4.642634
  187. dscore: CHG_Satsurblia f4: 0.000177 Z: 0.361365
  188.  
  189. gendstat: Mbuti.DG Armenia_Aknashen_N -2.094
  190. gendstat: Mbuti.DG China_Xinjiang_Xiaohe_BA -0.722
  191. gendstat: Mbuti.DG EHG -0.216
  192. gendstat: Mbuti.DG PPNB 0.198
  193. gendstat: Mbuti.DG Russia_Steppe_Eneolithic -1.381
  194. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -1.183
  195. gendstat: Mbuti.DG Turkmenistan_C_TepeAnau -0.814
  196. gendstat: Mbuti.DG ONG.SG -1.117
  197. gendstat: Mbuti.DG Russia_AfontovaGora3 0.479
  198. gendstat: Mbuti.DG Turkey_Epipaleolithic -0.512
  199. gendstat: Mbuti.DG CHG_Satsurblia 0.361
  200. gendstat: Armenia_Aknashen_N China_Xinjiang_Xiaohe_BA 1.450
  201. gendstat: Armenia_Aknashen_N EHG 1.894
  202. gendstat: Armenia_Aknashen_N PPNB 2.277
  203. gendstat: Armenia_Aknashen_N Russia_Steppe_Eneolithic 1.250
  204. gendstat: Armenia_Aknashen_N Serbia_IronGates_Mesolithic 1.532
  205. gendstat: Armenia_Aknashen_N Turkmenistan_C_TepeAnau 1.635
  206. gendstat: Armenia_Aknashen_N ONG.SG 1.273
  207. gendstat: Armenia_Aknashen_N Russia_AfontovaGora3 2.048
  208. gendstat: Armenia_Aknashen_N Turkey_Epipaleolithic 1.572
  209. gendstat: Armenia_Aknashen_N CHG_Satsurblia 2.106
  210. gendstat: China_Xinjiang_Xiaohe_BA EHG 0.626
  211. gendstat: China_Xinjiang_Xiaohe_BA PPNB 0.860
  212. gendstat: China_Xinjiang_Xiaohe_BA Russia_Steppe_Eneolithic -0.487
  213. gendstat: China_Xinjiang_Xiaohe_BA Serbia_IronGates_Mesolithic -0.191
  214. gendstat: China_Xinjiang_Xiaohe_BA Turkmenistan_C_TepeAnau 0.027
  215. gendstat: China_Xinjiang_Xiaohe_BA ONG.SG -0.287
  216. gendstat: China_Xinjiang_Xiaohe_BA Russia_AfontovaGora3 1.155
  217. gendstat: China_Xinjiang_Xiaohe_BA Turkey_Epipaleolithic 0.147
  218. gendstat: China_Xinjiang_Xiaohe_BA CHG_Satsurblia 0.887
  219. gendstat: EHG PPNB 0.394
  220. gendstat: EHG Russia_Steppe_Eneolithic -1.148
  221. gendstat: EHG Serbia_IronGates_Mesolithic -0.989
  222. gendstat: EHG Turkmenistan_C_TepeAnau -0.525
  223. gendstat: EHG ONG.SG -0.816
  224. gendstat: EHG Russia_AfontovaGora3 0.695
  225. gendstat: EHG Turkey_Epipaleolithic -0.325
  226. gendstat: EHG CHG_Satsurblia 0.510
  227. gendstat: PPNB Russia_Steppe_Eneolithic -1.445
  228. gendstat: PPNB Serbia_IronGates_Mesolithic -1.391
  229. gendstat: PPNB Turkmenistan_C_TepeAnau -1.018
  230. gendstat: PPNB ONG.SG -1.190
  231. gendstat: PPNB Russia_AfontovaGora3 0.362
  232. gendstat: PPNB Turkey_Epipaleolithic -0.703
  233. gendstat: PPNB CHG_Satsurblia 0.209
  234. gendstat: Russia_Steppe_Eneolithic Serbia_IronGates_Mesolithic 0.369
  235. gendstat: Russia_Steppe_Eneolithic Turkmenistan_C_TepeAnau 0.530
  236. gendstat: Russia_Steppe_Eneolithic ONG.SG 0.177
  237. gendstat: Russia_Steppe_Eneolithic Russia_AfontovaGora3 1.320
  238. gendstat: Russia_Steppe_Eneolithic Turkey_Epipaleolithic 0.556
  239. gendstat: Russia_Steppe_Eneolithic CHG_Satsurblia 1.330
  240. gendstat: Serbia_IronGates_Mesolithic Turkmenistan_C_TepeAnau 0.247
  241. gendstat: Serbia_IronGates_Mesolithic ONG.SG -0.128
  242. gendstat: Serbia_IronGates_Mesolithic Russia_AfontovaGora3 1.206
  243. gendstat: Serbia_IronGates_Mesolithic Turkey_Epipaleolithic 0.352
  244. gendstat: Serbia_IronGates_Mesolithic CHG_Satsurblia 1.189
  245. gendstat: Turkmenistan_C_TepeAnau ONG.SG -0.343
  246. gendstat: Turkmenistan_C_TepeAnau Russia_AfontovaGora3 0.990
  247. gendstat: Turkmenistan_C_TepeAnau Turkey_Epipaleolithic 0.137
  248. gendstat: Turkmenistan_C_TepeAnau CHG_Satsurblia 1.006
  249. gendstat: ONG.SG Russia_AfontovaGora3 1.230
  250. gendstat: ONG.SG Turkey_Epipaleolithic 0.397
  251. gendstat: ONG.SG CHG_Satsurblia 1.169
  252. gendstat: Russia_AfontovaGora3 Turkey_Epipaleolithic -0.840
  253. gendstat: Russia_AfontovaGora3 CHG_Satsurblia -0.161
  254. gendstat: Turkey_Epipaleolithic CHG_Satsurblia 0.750
  255.  
  256. ##end of qpAdm: 24.175 seconds cpu 1.286 Mbytes in use
  257.  
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