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- /AdmixTools.7.windows/qpAdm: parameter file: parqpadm_int.txt
- ### THE INPUT PARAMETERS
- ##PARAMETER NAME: VALUE
- indivname: v54.1.p1_1240K_public_merged.ind
- snpname: v54.1.p1_1240K_public_merged.snp
- genotypename: v54.1.p1_1240K_public_merged.geno
- popleft: left.txt
- popright: right.txt
- inbreed: NO
- allsnps: YES
- details: YES
- ## qpAdm version: 1201
- seed: -2108034067
- read 1073741824 bytes
- read 2147483648 bytes
- read 3221225472 bytes
- read 4294967296 bytes
- read 5368709120 bytes
- read 5421558161 bytes
- packed geno read OK
- end of inpack
- left pops:
- India_Zoroastrian
- Iranian_Fars_Shiraz
- Gujarati_US
- right pops:
- Mbuti.DG
- EHG
- CHG
- WSHG
- Onge.DG
- Turkey_N
- Levant_PPN
- Iran_GanjDareh_N
- Mongolia_North_N
- Serbia_IronGates_Mesolithic
- 0 India_Zoroastrian 13
- 1 Iranian_Fars_Shiraz 10
- 2 Gujarati_US 84
- 3 Mbuti.DG 14
- 4 EHG 21
- 5 CHG 2
- 6 WSHG 2
- 7 Onge.DG 2
- 8 Turkey_N 33
- 9 Levant_PPN 14
- 10 Iran_GanjDareh_N 10
- 11 Mongolia_North_N 5
- 12 Serbia_IronGates_Mesolithic 32
- jackknife block size: 0.050
- snps: 1150551 indivs: 242
- number of blocks for block jackknife: 714
- ## ncols: 1150551
- coverage: India_Zoroastrian 568227
- coverage: Iranian_Fars_Shiraz 586951
- coverage: Gujarati_US 1150397
- coverage: Mbuti.DG 1149711
- coverage: EHG 1121793
- coverage: CHG 1147700
- coverage: WSHG 856571
- coverage: Onge.DG 1120748
- coverage: Turkey_N 1139051
- coverage: Levant_PPN 630400
- coverage: Iran_GanjDareh_N 1057033
- coverage: Mongolia_North_N 1057835
- coverage: Serbia_IronGates_Mesolithic 1138678
- Effective number of blocks: 616.616
- numsnps used: 1150551
- codimension 1
- f4info:
- f4rank: 1 dof: 8 chisq: 14.427 tail: 0.0712880516 dofdiff: 10 chisqdiff: -14.427 taildiff: 1
- B:
- scale 1.000
- EHG 0.219
- CHG 0.756
- WSHG -0.298
- Onge.DG -1.462
- Turkey_N 1.569
- Levant_PPN 1.280
- Iran_GanjDareh_N 0.471
- Mongolia_North_N -1.163
- Serbia_IronGates_Mesolithic 0.694
- A:
- scale 803.319
- Iranian_Fars_Shiraz 0.524
- Gujarati_US -1.314
- full rank
- f4info:
- f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 8 chisqdiff: 14.427 taildiff: 0.0712880516
- B:
- scale 1548.145 603.720
- EHG -0.155 -0.306
- CHG 0.577 -0.803
- WSHG -0.377 0.271
- Onge.DG -1.916 1.325
- Turkey_N 1.313 -1.609
- Levant_PPN 0.919 -1.354
- Iran_GanjDareh_N 0.131 -0.546
- Mongolia_North_N -1.411 1.088
- Serbia_IronGates_Mesolithic 0.501 -0.727
- A:
- scale 1.414 1.414
- Iranian_Fars_Shiraz 1.414 0.000
- Gujarati_US 0.000 1.414
- best coefficients: 0.715 0.285
- Jackknife mean: 0.714944053 0.285055947
- std. errors: 0.014 0.014
- error covariance (* 1,000,000)
- 207 -207
- -207 207
- summ: India_Zoroastrian 2 0.071288 0.715 0.285 207 -207 207
- fixed pat wt dof chisq tail prob
- 00 0 8 14.427 0.0712881 0.715 0.285
- 01 1 9 296.697 0 1.000 0.000
- 10 1 9 1978.206 0 0.000 1.000
- best pat: 00 0.0712881 - -
- best pat: 01 1.30958e-58 chi(nested): 282.270 p-value for nested model: 2.40379e-63
- coeffs: 0.715 0.285
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: Iranian_Fars_Shiraz EHG -0.000100 -0.822436
- details: Gujarati_US EHG -0.000507 -4.591576
- dscore: EHG f4: -0.000216 Z: -2.060636
- details: Iranian_Fars_Shiraz CHG 0.000373 2.726378
- details: Gujarati_US CHG -0.001329 -10.656987
- dscore: CHG f4: -0.000113 Z: -0.952420
- details: Iranian_Fars_Shiraz WSHG -0.000244 -1.731845
- details: Gujarati_US WSHG 0.000449 3.548657
- dscore: WSHG f4: -0.000046 Z: -0.381981
- details: Iranian_Fars_Shiraz Onge.DG -0.001238 -9.026672
- details: Gujarati_US Onge.DG 0.002195 17.478716
- dscore: Onge.DG f4: -0.000259 Z: -2.201842
- details: Iranian_Fars_Shiraz Turkey_N 0.000848 7.474368
- details: Gujarati_US Turkey_N -0.002665 -24.954662
- dscore: Turkey_N f4: -0.000153 Z: -1.567992
- details: Iranian_Fars_Shiraz Levant_PPN 0.000593 5.079723
- details: Gujarati_US Levant_PPN -0.002243 -20.995592
- dscore: Levant_PPN f4: -0.000215 Z: -2.136288
- details: Iranian_Fars_Shiraz Iran_GanjDareh_N 0.000085 0.715519
- details: Gujarati_US Iran_GanjDareh_N -0.000904 -8.808070
- dscore: Iran_GanjDareh_N f4: -0.000197 Z: -1.952104
- details: Iranian_Fars_Shiraz Mongolia_North_N -0.000912 -7.482486
- details: Gujarati_US Mongolia_North_N 0.001803 16.031106
- dscore: Mongolia_North_N f4: -0.000138 Z: -1.315793
- details: Iranian_Fars_Shiraz Serbia_IronGates_Mesolithic 0.000324 2.526386
- details: Gujarati_US Serbia_IronGates_Mesolithic -0.001204 -9.888420
- dscore: Serbia_IronGates_Mesolithic f4: -0.000111 Z: -1.009185
- gendstat: Mbuti.DG EHG -2.061
- gendstat: Mbuti.DG CHG -0.952
- gendstat: Mbuti.DG WSHG -0.382
- gendstat: Mbuti.DG Onge.DG -2.202
- gendstat: Mbuti.DG Turkey_N -1.568
- gendstat: Mbuti.DG Levant_PPN -2.136
- gendstat: Mbuti.DG Iran_GanjDareh_N -1.952
- gendstat: Mbuti.DG Mongolia_North_N -1.316
- gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -1.009
- gendstat: EHG CHG 0.930
- gendstat: EHG WSHG 1.920
- gendstat: EHG Onge.DG -0.372
- gendstat: EHG Turkey_N 0.765
- gendstat: EHG Levant_PPN 0.014
- gendstat: EHG Iran_GanjDareh_N 0.193
- gendstat: EHG Mongolia_North_N 0.763
- gendstat: EHG Serbia_IronGates_Mesolithic 1.562
- gendstat: CHG WSHG 0.506
- gendstat: CHG Onge.DG -1.116
- gendstat: CHG Turkey_N -0.398
- gendstat: CHG Levant_PPN -0.875
- gendstat: CHG Iran_GanjDareh_N -0.774
- gendstat: CHG Mongolia_North_N -0.201
- gendstat: CHG Serbia_IronGates_Mesolithic 0.010
- gendstat: WSHG Onge.DG -1.592
- gendstat: WSHG Turkey_N -0.953
- gendstat: WSHG Levant_PPN -1.356
- gendstat: WSHG Iran_GanjDareh_N -1.304
- gendstat: WSHG Mongolia_North_N -0.767
- gendstat: WSHG Serbia_IronGates_Mesolithic -0.598
- gendstat: Onge.DG Turkey_N 0.928
- gendstat: Onge.DG Levant_PPN 0.344
- gendstat: Onge.DG Iran_GanjDareh_N 0.525
- gendstat: Onge.DG Mongolia_North_N 1.111
- gendstat: Onge.DG Serbia_IronGates_Mesolithic 1.229
- gendstat: Turkey_N Levant_PPN -0.796
- gendstat: Turkey_N Iran_GanjDareh_N -0.475
- gendstat: Turkey_N Mongolia_North_N 0.138
- gendstat: Turkey_N Serbia_IronGates_Mesolithic 0.550
- gendstat: Levant_PPN Iran_GanjDareh_N 0.167
- gendstat: Levant_PPN Mongolia_North_N 0.640
- gendstat: Levant_PPN Serbia_IronGates_Mesolithic 1.002
- gendstat: Iran_GanjDareh_N Mongolia_North_N 0.538
- gendstat: Iran_GanjDareh_N Serbia_IronGates_Mesolithic 0.829
- gendstat: Mongolia_North_N Serbia_IronGates_Mesolithic 0.239
- ##end of qpAdm: 107.421 seconds cpu 1190.789 Mbytes in use
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