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misnomer001

steppe_en = karelia+kotias+goksyur

misnomer001
Apr 24th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1863453338
  4. read 1073741824 bytes
  5. read 2146675633 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. Russia_Steppe_Eneolithic
  11. Russia_HG_Karelia
  12. Georgia_Kotias.SG
  13. Geoksyur_EN
  14.  
  15. right pops:
  16. Cameroon_SMA.DG
  17. Czech_Vestonice16
  18. Russia_Kostenki14
  19. Italy_North_Villabruna_HG
  20. Russia_MA1_HG.SG
  21. Iberia_ElMiron
  22. Morocco_Iberomaurusian
  23. Anatolia_Epipaleolithic
  24. Iran_GanjDareh_N
  25. Georgia_Satsurblia.SG
  26. Boisman_MN
  27. ONG.SG
  28.  
  29. 0 Russia_Steppe_Eneolithic 3
  30. 1 Russia_HG_Karelia 2
  31. 2 Georgia_Kotias.SG 1
  32. 3 Geoksyur_EN 21
  33. 4 Cameroon_SMA.DG 1
  34. 5 Czech_Vestonice16 1
  35. 6 Russia_Kostenki14 1
  36. 7 Italy_North_Villabruna_HG 1
  37. 8 Russia_MA1_HG.SG 1
  38. 9 Iberia_ElMiron 1
  39. 10 Morocco_Iberomaurusian 6
  40. 11 Anatolia_Epipaleolithic 1
  41. 12 Iran_GanjDareh_N 8
  42. 13 Georgia_Satsurblia.SG 1
  43. 14 Boisman_MN 12
  44. 15 ONG.SG 6
  45. jackknife block size: 0.050
  46. snps: 1150508 indivs: 67
  47. number of blocks for block jackknife: 713
  48. ## ncols: 1150508
  49. coverage: Russia_Steppe_Eneolithic 1008226
  50. coverage: Russia_HG_Karelia 1010733
  51. coverage: Georgia_Kotias.SG 1149097
  52. coverage: Geoksyur_EN 1020133
  53. coverage: Cameroon_SMA.DG 1140138
  54. coverage: Czech_Vestonice16 732091
  55. coverage: Russia_Kostenki14 1068326
  56. coverage: Italy_North_Villabruna_HG 883779
  57. coverage: Russia_MA1_HG.SG 805960
  58. coverage: Iberia_ElMiron 626974
  59. coverage: Morocco_Iberomaurusian 1101342
  60. coverage: Anatolia_Epipaleolithic 848431
  61. coverage: Iran_GanjDareh_N 1057358
  62. coverage: Georgia_Satsurblia.SG 801311
  63. coverage: Boisman_MN 1031750
  64. coverage: ONG.SG 1143397
  65. dof (jackknife): 617.898
  66. numsnps used: 1150508
  67. codimension 1
  68. f4info:
  69. f4rank: 2 dof: 9 chisq: 14.775 tail: 0.0972924298 dofdiff: 11 chisqdiff: -14.775 taildiff: 1
  70. B:
  71. scale 1.000 1.000
  72. Czech_Vestonice16 0.902 0.115
  73. Russia_Kostenki14 0.900 0.343
  74. Italy_North_Villabruna_HG 1.672 0.724
  75. Russia_MA1_HG.SG 1.713 0.120
  76. Iberia_ElMiron 1.020 0.481
  77. Morocco_Iberomaurusian 0.183 0.220
  78. Anatolia_Epipaleolithic 0.346 0.546
  79. Iran_GanjDareh_N -0.911 -0.983
  80. Georgia_Satsurblia.SG -1.025 2.958
  81. Boisman_MN 0.628 -0.073
  82. ONG.SG 0.425 0.171
  83. A:
  84. scale 426.319 1162.473
  85. Russia_HG_Karelia 1.056 0.043
  86. Georgia_Kotias.SG -1.071 1.290
  87. Geoksyur_EN -0.859 -1.155
  88.  
  89.  
  90. full rank
  91. f4info:
  92. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 14.775 taildiff: 0.0972924298
  93. B:
  94. scale 437.941 347.932 399.317
  95. Czech_Vestonice16 1.002 -0.747 -0.794
  96. Russia_Kostenki14 0.645 -0.857 -1.028
  97. Italy_North_Villabruna_HG 1.625 -1.327 -1.762
  98. Russia_MA1_HG.SG 1.465 -1.709 -1.652
  99. Iberia_ElMiron 0.958 -0.842 -1.127
  100. Morocco_Iberomaurusian 0.085 -0.150 -0.303
  101. Anatolia_Epipaleolithic 0.094 -0.301 -0.676
  102. Iran_GanjDareh_N -1.319 0.194 0.945
  103. Georgia_Satsurblia.SG -1.265 1.904 -0.491
  104. Boisman_MN 0.631 -0.614 -0.532
  105. ONG.SG 0.350 -0.406 -0.496
  106. A:
  107. scale 1.732 1.732 1.732
  108. Russia_HG_Karelia 1.732 0.000 0.000
  109. Georgia_Kotias.SG 0.000 1.732 0.000
  110. Geoksyur_EN 0.000 0.000 1.732
  111.  
  112.  
  113. best coefficients: 0.475 0.240 0.285
  114. Jackknife mean: 0.475071393 0.239383238 0.285545368
  115. std. errors: 0.019 0.031 0.033
  116.  
  117. error covariance (* 1,000,000)
  118. 360 -123 -237
  119. -123 979 -856
  120. -237 -856 1094
  121.  
  122.  
  123. summ: Russia_Steppe_Eneolithic 3 0.097292 0.475 0.239 0.286 360 -123 -237 979 -856 ...
  124. 1094
  125.  
  126. fixed pat wt dof chisq tail prob
  127. 000 0 9 14.775 0.0972924 0.475 0.240 0.285
  128. 001 1 10 69.888 4.6607e-11 0.524 0.476 0.000
  129. 010 1 10 75.786 3.34457e-12 0.506 0.000 0.494
  130. 100 1 10 338.043 0 0.000 2.046 -1.046 infeasible
  131. 011 2 11 435.590 0 1.000 0.000 0.000
  132. 101 2 11 377.675 0 0.000 1.000 0.000
  133. 110 2 11 742.965 0 0.000 0.000 1.000
  134. best pat: 000 0.0972924 - -
  135. best pat: 001 4.6607e-11 chi(nested): 55.112 p-value for nested model: 1.13836e-13
  136. best pat: 101 3.33345e-74 chi(nested): 307.787 p-value for nested model: 6.62639e-69
  137.  
  138. coeffs: 0.475 0.240 0.285
  139.  
  140. ## dscore:: f_4(Base, Fit, Rbase, right2)
  141. ## genstat:: f_4(Base, Fit, right1, right2)
  142.  
  143. details: Russia_HG_Karelia Czech_Vestonice16 0.002287 5.444060
  144. details: Georgia_Kotias.SG Czech_Vestonice16 -0.002148 -4.854283
  145. details: Geoksyur_EN Czech_Vestonice16 -0.001988 -6.960333
  146. dscore: Czech_Vestonice16 f4: 0.000004 Z: 0.014257
  147.  
  148. details: Russia_HG_Karelia Russia_Kostenki14 0.001472 3.085970
  149. details: Georgia_Kotias.SG Russia_Kostenki14 -0.002464 -5.055204
  150. details: Geoksyur_EN Russia_Kostenki14 -0.002575 -8.452203
  151. dscore: Russia_Kostenki14 f4: -0.000626 Z: -1.951097
  152.  
  153. details: Russia_HG_Karelia Italy_North_Villabruna_HG 0.003710 7.778279
  154. details: Georgia_Kotias.SG Italy_North_Villabruna_HG -0.003814 -7.643092
  155. details: Geoksyur_EN Italy_North_Villabruna_HG -0.004412 -14.085154
  156. dscore: Italy_North_Villabruna_HG f4: -0.000411 Z: -1.241700
  157.  
  158. details: Russia_HG_Karelia Russia_MA1_HG.SG 0.003345 7.532479
  159. details: Georgia_Kotias.SG Russia_MA1_HG.SG -0.004910 -10.547253
  160. details: Geoksyur_EN Russia_MA1_HG.SG -0.004136 -13.268546
  161. dscore: Russia_MA1_HG.SG f4: -0.000768 Z: -2.456708
  162.  
  163. details: Russia_HG_Karelia Iberia_ElMiron 0.002188 5.774476
  164. details: Georgia_Kotias.SG Iberia_ElMiron -0.002419 -6.049842
  165. details: Geoksyur_EN Iberia_ElMiron -0.002822 -10.253340
  166. dscore: Iberia_ElMiron f4: -0.000346 Z: -1.288939
  167.  
  168. details: Russia_HG_Karelia Morocco_Iberomaurusian 0.000194 0.561904
  169. details: Georgia_Kotias.SG Morocco_Iberomaurusian -0.000432 -1.158123
  170. details: Geoksyur_EN Morocco_Iberomaurusian -0.000759 -3.114448
  171. dscore: Morocco_Iberomaurusian f4: -0.000228 Z: -0.929550
  172.  
  173. details: Russia_HG_Karelia Anatolia_Epipaleolithic 0.000214 0.530005
  174. details: Georgia_Kotias.SG Anatolia_Epipaleolithic -0.000866 -1.920198
  175. details: Geoksyur_EN Anatolia_Epipaleolithic -0.001693 -5.655187
  176. dscore: Anatolia_Epipaleolithic f4: -0.000589 Z: -2.019227
  177.  
  178. details: Russia_HG_Karelia Iran_GanjDareh_N -0.003012 -8.726982
  179. details: Georgia_Kotias.SG Iran_GanjDareh_N 0.000557 1.467382
  180. details: Geoksyur_EN Iran_GanjDareh_N 0.002367 9.268487
  181. dscore: Iran_GanjDareh_N f4: -0.000621 Z: -2.481273
  182.  
  183. details: Russia_HG_Karelia Georgia_Satsurblia.SG -0.002889 -7.735186
  184. details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.005473 11.486971
  185. details: Geoksyur_EN Georgia_Satsurblia.SG -0.001229 -4.172339
  186. dscore: Georgia_Satsurblia.SG f4: -0.000411 Z: -1.488896
  187.  
  188. details: Russia_HG_Karelia Boisman_MN 0.001441 4.026889
  189. details: Georgia_Kotias.SG Boisman_MN -0.001764 -4.453388
  190. details: Geoksyur_EN Boisman_MN -0.001333 -5.178957
  191. dscore: Boisman_MN f4: -0.000119 Z: -0.459950
  192.  
  193. details: Russia_HG_Karelia ONG.SG 0.000800 2.160756
  194. details: Georgia_Kotias.SG ONG.SG -0.001167 -2.952755
  195. details: Geoksyur_EN ONG.SG -0.001242 -4.832964
  196. dscore: ONG.SG f4: -0.000254 Z: -0.991368
  197.  
  198. gendstat: Cameroon_SMA.DG Czech_Vestonice16 0.014
  199. gendstat: Cameroon_SMA.DG Russia_Kostenki14 -1.951
  200. gendstat: Cameroon_SMA.DG Italy_North_Villabruna_HG -1.242
  201. gendstat: Cameroon_SMA.DG Russia_MA1_HG.SG -2.457
  202. gendstat: Cameroon_SMA.DG Iberia_ElMiron -1.289
  203. gendstat: Cameroon_SMA.DG Morocco_Iberomaurusian -0.930
  204. gendstat: Cameroon_SMA.DG Anatolia_Epipaleolithic -2.019
  205. gendstat: Cameroon_SMA.DG Iran_GanjDareh_N -2.481
  206. gendstat: Cameroon_SMA.DG Georgia_Satsurblia.SG -1.489
  207. gendstat: Cameroon_SMA.DG Boisman_MN -0.460
  208. gendstat: Cameroon_SMA.DG ONG.SG -0.991
  209. gendstat: Czech_Vestonice16 Russia_Kostenki14 -1.872
  210. gendstat: Czech_Vestonice16 Italy_North_Villabruna_HG -1.165
  211. gendstat: Czech_Vestonice16 Russia_MA1_HG.SG -2.221
  212. gendstat: Czech_Vestonice16 Iberia_ElMiron -1.072
  213. gendstat: Czech_Vestonice16 Morocco_Iberomaurusian -0.754
  214. gendstat: Czech_Vestonice16 Anatolia_Epipaleolithic -1.721
  215. gendstat: Czech_Vestonice16 Iran_GanjDareh_N -1.969
  216. gendstat: Czech_Vestonice16 Georgia_Satsurblia.SG -1.149
  217. gendstat: Czech_Vestonice16 Boisman_MN -0.396
  218. gendstat: Czech_Vestonice16 ONG.SG -0.834
  219. gendstat: Russia_Kostenki14 Italy_North_Villabruna_HG 0.592
  220. gendstat: Russia_Kostenki14 Russia_MA1_HG.SG -0.401
  221. gendstat: Russia_Kostenki14 Iberia_ElMiron 0.837
  222. gendstat: Russia_Kostenki14 Morocco_Iberomaurusian 1.258
  223. gendstat: Russia_Kostenki14 Anatolia_Epipaleolithic 0.106
  224. gendstat: Russia_Kostenki14 Iran_GanjDareh_N 0.016
  225. gendstat: Russia_Kostenki14 Georgia_Satsurblia.SG 0.606
  226. gendstat: Russia_Kostenki14 Boisman_MN 1.649
  227. gendstat: Russia_Kostenki14 ONG.SG 1.206
  228. gendstat: Italy_North_Villabruna_HG Russia_MA1_HG.SG -0.969
  229. gendstat: Italy_North_Villabruna_HG Iberia_ElMiron 0.197
  230. gendstat: Italy_North_Villabruna_HG Morocco_Iberomaurusian 0.543
  231. gendstat: Italy_North_Villabruna_HG Anatolia_Epipaleolithic -0.497
  232. gendstat: Italy_North_Villabruna_HG Iran_GanjDareh_N -0.622
  233. gendstat: Italy_North_Villabruna_HG Georgia_Satsurblia.SG -0.002
  234. gendstat: Italy_North_Villabruna_HG Boisman_MN 0.842
  235. gendstat: Italy_North_Villabruna_HG ONG.SG 0.461
  236. gendstat: Russia_MA1_HG.SG Iberia_ElMiron 1.233
  237. gendstat: Russia_MA1_HG.SG Morocco_Iberomaurusian 1.657
  238. gendstat: Russia_MA1_HG.SG Anatolia_Epipaleolithic 0.503
  239. gendstat: Russia_MA1_HG.SG Iran_GanjDareh_N 0.481
  240. gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG 0.983
  241. gendstat: Russia_MA1_HG.SG Boisman_MN 2.111
  242. gendstat: Russia_MA1_HG.SG ONG.SG 1.660
  243. gendstat: Iberia_ElMiron Morocco_Iberomaurusian 0.391
  244. gendstat: Iberia_ElMiron Anatolia_Epipaleolithic -0.746
  245. gendstat: Iberia_ElMiron Iran_GanjDareh_N -0.929
  246. gendstat: Iberia_ElMiron Georgia_Satsurblia.SG -0.195
  247. gendstat: Iberia_ElMiron Boisman_MN 0.750
  248. gendstat: Iberia_ElMiron ONG.SG 0.308
  249. gendstat: Morocco_Iberomaurusian Anatolia_Epipaleolithic -1.205
  250. gendstat: Morocco_Iberomaurusian Iran_GanjDareh_N -1.513
  251. gendstat: Morocco_Iberomaurusian Georgia_Satsurblia.SG -0.616
  252. gendstat: Morocco_Iberomaurusian Boisman_MN 0.399
  253. gendstat: Morocco_Iberomaurusian ONG.SG -0.096
  254. gendstat: Anatolia_Epipaleolithic Iran_GanjDareh_N -0.108
  255. gendstat: Anatolia_Epipaleolithic Georgia_Satsurblia.SG 0.522
  256. gendstat: Anatolia_Epipaleolithic Boisman_MN 1.475
  257. gendstat: Anatolia_Epipaleolithic ONG.SG 1.092
  258. gendstat: Iran_GanjDareh_N Georgia_Satsurblia.SG 0.804
  259. gendstat: Iran_GanjDareh_N Boisman_MN 2.034
  260. gendstat: Iran_GanjDareh_N ONG.SG 1.467
  261. gendstat: Georgia_Satsurblia.SG Boisman_MN 0.951
  262. gendstat: Georgia_Satsurblia.SG ONG.SG 0.542
  263. gendstat: Boisman_MN ONG.SG -0.616
  264.  
  265. ##end of qpAdm: 370.846 seconds cpu 1349.874 Mbytes in use
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