BLASR

cd /scratch/jungminh/bins/blasr
##SZIP
wget http://www.hdfgroup.org/ftp/lib-external/szip/2.1/src/szip-2.1.tar.gz
 tar zxvf szip-2.1.tar.gz
 cd szip-2.1/
 ./configure --prefix=/home/jungminh/scratch/bins/blasr && make && make install

##HDF5
wget http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.13.tar.gz
tar zxvf hdf5-1.8.13.tar.gz
cd hdf5-1.8.13/
./configure --prefix=//home/jungminh/scratch/bins/blasr --with-szlib=/home/jungminh/scratch/bins/blasr --enable-cxx --enable-threadsafe --enable-unsupported --with-pthread && make && make install

##BLASR
export HDF5INCLUDEDIR=/scratch/jungminh/bins/blasr/include
export HDF5LIBDIR=/scratch/jungminh/bins/blasr/lib
echo "STATIC = -Wl,-rpath,/scratch/jungminh/bins/blasr/lib" >> common.mk
make ASSEMBLY_HOME=/scratch/jungminh/bins/blasr
make install ASSEMBLY_HOME=/scratch/jungminh/bins/blasr

/home/jungminh/scratch/bins/blasr/bin