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misnomer001

Dali MLBA

misnomer001
Jan 9th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 810
  3. seed: 1891957031
  4.  
  5. left pops:
  6. Dali_MLBA
  7. Oy_Dzhaylau_MLBA
  8. Dali_EBA
  9.  
  10. right pops:
  11. Kazakhstan_Botai.SG
  12. Ganj_Dareh_N
  13. PPN
  14. Anatolia_N
  15. Iberia_MN
  16. Russia_MA1.SG
  17. Georgia_Satsurblia.SG
  18. Kostenki14.SG
  19. Russia_Karelia_HG
  20. Serbia_Iron_Gates_HG
  21. Tyumen_HG
  22. Onge.DG
  23. Russia_Shamanka_EN.SG
  24.  
  25. 0 Dali_MLBA 3
  26. 1 Oy_Dzhaylau_MLBA 6
  27. 2 Dali_EBA 1
  28. 3 Kazakhstan_Botai.SG 3
  29. 4 Ganj_Dareh_N 7
  30. 5 PPN 8
  31. 6 Anatolia_N 22
  32. 7 Iberia_MN 4
  33. 8 Russia_MA1.SG 1
  34. 9 Georgia_Satsurblia.SG 1
  35. 10 Kostenki14.SG 1
  36. 11 Russia_Karelia_HG 2
  37. 12 Serbia_Iron_Gates_HG 32
  38. 13 Tyumen_HG 2
  39. 14 Onge.DG 2
  40. 15 Russia_Shamanka_EN.SG 10
  41. jackknife block size: 0.050
  42. snps: 1150475 indivs: 105
  43. number of blocks for block jackknife: 552
  44. ## ncols: 1150475
  45. coverage: Dali_MLBA 931588
  46. coverage: Oy_Dzhaylau_MLBA 999558
  47. coverage: Dali_EBA 774708
  48. coverage: Kazakhstan_Botai.SG 1149870
  49. coverage: Ganj_Dareh_N 1029695
  50. coverage: PPN 835499
  51. coverage: Anatolia_N 1134099
  52. coverage: Iberia_MN 967760
  53. coverage: Russia_MA1.SG 805960
  54. coverage: Georgia_Satsurblia.SG 801311
  55. coverage: Kostenki14.SG 1048972
  56. coverage: Russia_Karelia_HG 1010733
  57. coverage: Serbia_Iron_Gates_HG 1139259
  58. coverage: Tyumen_HG 807474
  59. coverage: Onge.DG 1120748
  60. coverage: Russia_Shamanka_EN.SG 1149998
  61. dof (jackknife): 465.502
  62. numsnps used: 1150475
  63. codimension 1
  64. f4info:
  65. f4rank: 1 dof: 11 chisq: 15.151 tail: 0.175698067 dofdiff: 13 chisqdiff: -15.151 taildiff: 1
  66. B:
  67. scale 1.000
  68. Ganj_Dareh_N 0.994
  69. PPN 1.436
  70. Anatolia_N 1.556
  71. Iberia_MN 1.527
  72. Russia_MA1.SG 0.089
  73. Georgia_Satsurblia.SG 0.766
  74. Kostenki14.SG 0.876
  75. Russia_Karelia_HG 0.545
  76. Serbia_Iron_Gates_HG 1.389
  77. Tyumen_HG -0.059
  78. Onge.DG 0.701
  79. Russia_Shamanka_EN.SG 0.340
  80. A:
  81. scale 253.812
  82. Oy_Dzhaylau_MLBA 0.281
  83. Dali_EBA -1.386
  84.  
  85.  
  86. full rank
  87. f4info:
  88. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 15.151 taildiff: 0.175698067
  89. B:
  90. scale 1.000 1.000
  91. Ganj_Dareh_N 0.993 0.498
  92. PPN 1.439 -1.336
  93. Anatolia_N 1.555 0.360
  94. Iberia_MN 1.531 -0.714
  95. Russia_MA1.SG 0.085 -0.642
  96. Georgia_Satsurblia.SG 0.768 0.526
  97. Kostenki14.SG 0.873 -0.780
  98. Russia_Karelia_HG 0.541 0.306
  99. Serbia_Iron_Gates_HG 1.384 0.146
  100. Tyumen_HG -0.068 -1.454
  101. Onge.DG 0.701 1.984
  102. Russia_Shamanka_EN.SG 0.338 1.366
  103. A:
  104. scale 254.587 4648.607
  105. Oy_Dzhaylau_MLBA 0.276 -1.061
  106. Dali_EBA -1.387 -0.935
  107.  
  108.  
  109. best coefficients: 0.832 0.168
  110. Jackknife mean: 0.831067984 0.168932016
  111. std. errors: 0.026 0.026
  112.  
  113. error covariance (* 1000000)
  114. 653 -653
  115. -653 653
  116.  
  117.  
  118. summ: Dali_MLBA 2 0.175698 0.831 0.169 653 -653 653
  119.  
  120. fixed pat wt dof chisq tail prob
  121. 00 0 11 15.151 0.175698 0.832 0.168
  122. 01 1 12 54.941 1.85477e-07 1.000 -0.000
  123. 10 1 12 627.335 0 0.000 1.000
  124. best pat: 00 0.175698 - -
  125. best pat: 01 1.85477e-07 chi(nested): 39.790 p-value for nested model: 2.82801e-10
  126.  
  127. coeffs: 0.832 0.168
  128.  
  129. ## dscore:: f_4(Base, Fit, Rbase, right2)
  130. ## genstat:: f_4(Base, Fit, right1, right2)
  131.  
  132. details: Oy_Dzhaylau_MLBA Ganj_Dareh_N 0.000915 2.823875
  133. details: Dali_EBA Ganj_Dareh_N -0.005614 -13.773264
  134. dscore: Ganj_Dareh_N f4: -0.000185 Z: -0.603700
  135.  
  136. details: Oy_Dzhaylau_MLBA PPN 0.001816 5.263319
  137. details: Dali_EBA PPN -0.007699 -17.355714
  138. dscore: PPN f4: 0.000213 Z: 0.652923
  139.  
  140. details: Oy_Dzhaylau_MLBA Anatolia_N 0.001608 4.873311
  141. details: Dali_EBA Anatolia_N -0.008597 -21.458470
  142. dscore: Anatolia_N f4: -0.000111 Z: -0.361039
  143.  
  144. details: Oy_Dzhaylau_MLBA Iberia_MN 0.001747 5.026214
  145. details: Dali_EBA Iberia_MN -0.008314 -20.440463
  146. dscore: Iberia_MN f4: 0.000052 Z: 0.160093
  147.  
  148. details: Oy_Dzhaylau_MLBA Russia_MA1.SG 0.000252 0.899598
  149. details: Dali_EBA Russia_MA1.SG -0.000357 -0.998586
  150. dscore: Russia_MA1.SG f4: 0.000149 Z: 0.574647
  151.  
  152. details: Oy_Dzhaylau_MLBA Georgia_Satsurblia.SG 0.000651 1.982461
  153. details: Dali_EBA Georgia_Satsurblia.SG -0.004415 -10.932924
  154. dscore: Georgia_Satsurblia.SG f4: -0.000203 Z: -0.661756
  155.  
  156. details: Oy_Dzhaylau_MLBA Kostenki14.SG 0.001100 3.173225
  157. details: Dali_EBA Kostenki14.SG -0.004677 -10.673859
  158. dscore: Kostenki14.SG f4: 0.000126 Z: 0.390685
  159.  
  160. details: Oy_Dzhaylau_MLBA Russia_Karelia_HG 0.000534 1.653309
  161. details: Dali_EBA Russia_Karelia_HG -0.003028 -7.533747
  162. dscore: Russia_Karelia_HG f4: -0.000066 Z: -0.217992
  163.  
  164. details: Oy_Dzhaylau_MLBA Serbia_Iron_Gates_HG 0.001481 4.866253
  165. details: Dali_EBA Serbia_Iron_Gates_HG -0.007582 -20.016156
  166. dscore: Serbia_Iron_Gates_HG f4: -0.000046 Z: -0.160769
  167.  
  168. details: Oy_Dzhaylau_MLBA Tyumen_HG 0.000288 1.032360
  169. details: Dali_EBA Tyumen_HG 0.000713 1.682067
  170. dscore: Tyumen_HG f4: 0.000360 Z: 1.332039
  171.  
  172. details: Oy_Dzhaylau_MLBA Onge.DG 0.000205 0.642423
  173. details: Dali_EBA Onge.DG -0.004367 -10.822994
  174. dscore: Onge.DG f4: -0.000565 Z: -1.882089
  175.  
  176. details: Oy_Dzhaylau_MLBA Russia_Shamanka_EN.SG 0.000001 0.004549
  177. details: Dali_EBA Russia_Shamanka_EN.SG -0.002225 -6.166024
  178. dscore: Russia_Shamanka_EN.SG f4: -0.000374 Z: -1.505357
  179.  
  180. gendstat: Kazakhstan_Botai.SG Ganj_Dareh_N -0.604
  181. gendstat: Kazakhstan_Botai.SG PPN 0.653
  182. gendstat: Kazakhstan_Botai.SG Anatolia_N -0.361
  183. gendstat: Kazakhstan_Botai.SG Iberia_MN 0.160
  184. gendstat: Kazakhstan_Botai.SG Russia_MA1.SG 0.575
  185. gendstat: Kazakhstan_Botai.SG Georgia_Satsurblia.SG -0.662
  186. gendstat: Kazakhstan_Botai.SG Kostenki14.SG 0.391
  187. gendstat: Kazakhstan_Botai.SG Russia_Karelia_HG -0.218
  188. gendstat: Kazakhstan_Botai.SG Serbia_Iron_Gates_HG -0.161
  189. gendstat: Kazakhstan_Botai.SG Tyumen_HG 1.332
  190. gendstat: Kazakhstan_Botai.SG Onge.DG -1.882
  191. gendstat: Kazakhstan_Botai.SG Russia_Shamanka_EN.SG -1.505
  192. gendstat: Ganj_Dareh_N PPN 1.455
  193. gendstat: Ganj_Dareh_N Anatolia_N 0.325
  194. gendstat: Ganj_Dareh_N Iberia_MN 0.880
  195. gendstat: Ganj_Dareh_N Russia_MA1.SG 1.012
  196. gendstat: Ganj_Dareh_N Georgia_Satsurblia.SG -0.061
  197. gendstat: Ganj_Dareh_N Kostenki14.SG 0.949
  198. gendstat: Ganj_Dareh_N Russia_Karelia_HG 0.326
  199. gendstat: Ganj_Dareh_N Serbia_Iron_Gates_HG 0.501
  200. gendstat: Ganj_Dareh_N Tyumen_HG 1.506
  201. gendstat: Ganj_Dareh_N Onge.DG -1.280
  202. gendstat: Ganj_Dareh_N Russia_Shamanka_EN.SG -0.663
  203. gendstat: PPN Anatolia_N -1.602
  204. gendstat: PPN Iberia_MN -0.631
  205. gendstat: PPN Russia_MA1.SG -0.181
  206. gendstat: PPN Georgia_Satsurblia.SG -1.332
  207. gendstat: PPN Kostenki14.SG -0.254
  208. gendstat: PPN Russia_Karelia_HG -0.770
  209. gendstat: PPN Serbia_Iron_Gates_HG -0.993
  210. gendstat: PPN Tyumen_HG 0.394
  211. gendstat: PPN Onge.DG -2.458
  212. gendstat: PPN Russia_Shamanka_EN.SG -1.971
  213. gendstat: Anatolia_N Iberia_MN 0.895
  214. gendstat: Anatolia_N Russia_MA1.SG 0.797
  215. gendstat: Anatolia_N Georgia_Satsurblia.SG -0.321
  216. gendstat: Anatolia_N Kostenki14.SG 0.774
  217. gendstat: Anatolia_N Russia_Karelia_HG 0.132
  218. gendstat: Anatolia_N Serbia_Iron_Gates_HG 0.317
  219. gendstat: Anatolia_N Tyumen_HG 1.312
  220. gendstat: Anatolia_N Onge.DG -1.580
  221. gendstat: Anatolia_N Russia_Shamanka_EN.SG -0.995
  222. gendstat: Iberia_MN Russia_MA1.SG 0.280
  223. gendstat: Iberia_MN Georgia_Satsurblia.SG -0.836
  224. gendstat: Iberia_MN Kostenki14.SG 0.228
  225. gendstat: Iberia_MN Russia_Karelia_HG -0.334
  226. gendstat: Iberia_MN Serbia_Iron_Gates_HG -0.443
  227. gendstat: Iberia_MN Tyumen_HG 0.805
  228. gendstat: Iberia_MN Onge.DG -1.996
  229. gendstat: Iberia_MN Russia_Shamanka_EN.SG -1.492
  230. gendstat: Russia_MA1.SG Georgia_Satsurblia.SG -0.978
  231. gendstat: Russia_MA1.SG Kostenki14.SG -0.065
  232. gendstat: Russia_MA1.SG Russia_Karelia_HG -0.622
  233. gendstat: Russia_MA1.SG Serbia_Iron_Gates_HG -0.627
  234. gendstat: Russia_MA1.SG Tyumen_HG 0.655
  235. gendstat: Russia_MA1.SG Onge.DG -2.173
  236. gendstat: Russia_MA1.SG Russia_Shamanka_EN.SG -1.729
  237. gendstat: Georgia_Satsurblia.SG Kostenki14.SG 0.948
  238. gendstat: Georgia_Satsurblia.SG Russia_Karelia_HG 0.371
  239. gendstat: Georgia_Satsurblia.SG Serbia_Iron_Gates_HG 0.510
  240. gendstat: Georgia_Satsurblia.SG Tyumen_HG 1.520
  241. gendstat: Georgia_Satsurblia.SG Onge.DG -1.098
  242. gendstat: Georgia_Satsurblia.SG Russia_Shamanka_EN.SG -0.565
  243. gendstat: Kostenki14.SG Russia_Karelia_HG -0.510
  244. gendstat: Kostenki14.SG Serbia_Iron_Gates_HG -0.578
  245. gendstat: Kostenki14.SG Tyumen_HG 0.618
  246. gendstat: Kostenki14.SG Onge.DG -2.065
  247. gendstat: Kostenki14.SG Russia_Shamanka_EN.SG -1.633
  248. gendstat: Russia_Karelia_HG Serbia_Iron_Gates_HG 0.065
  249. gendstat: Russia_Karelia_HG Tyumen_HG 1.180
  250. gendstat: Russia_Karelia_HG Onge.DG -1.320
  251. gendstat: Russia_Karelia_HG Russia_Shamanka_EN.SG -0.903
  252. gendstat: Serbia_Iron_Gates_HG Tyumen_HG 1.199
  253. gendstat: Serbia_Iron_Gates_HG Onge.DG -1.711
  254. gendstat: Serbia_Iron_Gates_HG Russia_Shamanka_EN.SG -1.193
  255. gendstat: Tyumen_HG Onge.DG -2.661
  256. gendstat: Tyumen_HG Russia_Shamanka_EN.SG -2.284
  257. gendstat: Onge.DG Russia_Shamanka_EN.SG 0.762
  258.  
  259. ## end of run
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