“Doomsday”
Both:
Doctor Who Reboot, Series 2 Episode 13
MTG Masterpiece Series Amonkhet Invocations

“Snowblind”
MTG:
MTG Ice Age

“Underworld”
DW:
Doctor Who Classic, Season 15 Serial 5
Several MTG cards contain the word “Underworld” but none are just called “Underworld”.

“Tooth and Claw”
Both:
Doctor Who Reboot, Series 2 Episode 2
MTG Eternal Masters

“Blink”
DW:
Doctor Who Reboot, Series 3 Episode 10

“Dragon’s Claw”
MTG:
MTG Magic 2012

“Hide”
Both:
Doctor Who Reboot, Series 7 Episode 9
MTG Dissension

“Forest of the Dead”
DW:
Doctor Who Reboot, Series 4 Episode 9

“Dark Water”
DW:
Doctor Who Reboot, Series 8 Episode 11
Multiple MTG cards are the “Darkwater [something]” but “Dark Water” is not a card.

“Terminus”
Both:
Doctor Who Classic, Season 20 Serial 4
MTG Modern Masters 2017 Edition