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Legend_9813

Khvalynsk_EHG+Tajikistan_C_Sarazm w/CHG in right

Legend_9813
Jan 22nd, 2023
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. indivname: Steppe_Eneolithic.ind
  5. snpname: Steppe_Eneolithic.snp
  6. genotypename: Steppe_Eneolithic.geno
  7. popleft: left
  8. popright: right
  9. inbreed: NO
  10. allsnps: YES
  11. ## qpAdm version: 1520
  12. seed: 9453478
  13. inbreed set NO
  14. inbreed set NO
  15. tmp: /tmp/fsx.288
  16.  
  17. left pops:
  18. RUS_Khvalynsk_EN
  19. EHG_highANE
  20. Tajikistan_C_Sarazm
  21.  
  22. right pops:
  23. Mbuti.DG
  24. WHG
  25. Turkey_N
  26. Levant_PPN
  27. EHG_Mesolithic
  28. CHG_Satsurblia
  29. IRQ_Nemrik9_PPN
  30. Iran_GanjDareh_N
  31. Russia_Tyumen_HG
  32. CHG_Kotias
  33. Russia_Shamanka_EN
  34. Turkey_Boncuklu_PPN
  35. Russia_AfontovaGora3
  36. Serbia_IronGates_Mesolithic
  37.  
  38. codimension 1
  39. f4info:
  40. f4rank: 1 dof: 12 chisq: 41.040 tail: 4.8248389e-05 dofdiff: 14 chisqdiff: -41.040 taildiff: 1
  41. B:
  42. scale 1.000
  43. WHG 1.258
  44. Turkey_N 0.069
  45. Levant_PPN 0.082
  46. EHG_Mesolithic 2.028
  47. CHG_Satsurblia -0.414
  48. IRQ_Nemrik9_PPN -0.309
  49. Iran_GanjDareh_N -0.630
  50. Russia_Tyumen_HG 1.508
  51. CHG_Kotias -0.317
  52. Russia_Shamanka_EN 0.375
  53. Turkey_Boncuklu_PPN 0.163
  54. Russia_AfontovaGora3 1.465
  55. Serbia_IronGates_Mesolithic 1.393
  56. A:
  57. scale 64.034
  58. EHG_highANE 0.357
  59. Tajikistan_C_Sarazm -1.368
  60.  
  61.  
  62. full rank
  63. f4info:
  64. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 12 chisqdiff: 41.040 taildiff: 4.8248389e-05
  65. B:
  66. scale 167.488 45.530
  67. WHG 0.409 -1.396
  68. Turkey_N -0.398 -0.185
  69. Levant_PPN -0.136 -0.121
  70. EHG_Mesolithic 1.984 -1.986
  71. CHG_Satsurblia -1.185 0.166
  72. IRQ_Nemrik9_PPN -0.575 0.228
  73. Iran_GanjDareh_N -0.602 0.597
  74. Russia_Tyumen_HG 1.496 -1.475
  75. CHG_Kotias -1.027 0.116
  76. Russia_Shamanka_EN 0.288 -0.394
  77. Turkey_Boncuklu_PPN -0.286 -0.267
  78. Russia_AfontovaGora3 1.591 -1.414
  79. Serbia_IronGates_Mesolithic 0.797 -1.486
  80. A:
  81. scale 1.414 1.414
  82. EHG_highANE 1.414 0.000
  83. Tajikistan_C_Sarazm 0.000 1.414
  84.  
  85.  
  86. best coefficients: 0.793 0.207
  87. totmean: 0.793 0.207
  88. boot mean: 0.793 0.207
  89. std. errors: 0.016 0.016
  90.  
  91. error covariance (* 1,000,000)
  92. 242 -242
  93. -242 242
  94.  
  95.  
  96. summ: RUS_Khvalynsk_EN 2 0.000048 0.793 0.207 242 -242 242
  97.  
  98. fixed pat wt dof chisq tail prob
  99. 00 0 12 41.040 4.82484e-05 0.793 0.207
  100. 01 1 13 215.811 0 1.000 0.000
  101. 10 1 13 1608.926 0 0.000 1.000
  102. best pat: 00 4.82484e-05 - -
  103. best pat: 01 7.62533e-39 chi(nested): 174.771 p-value for nested model: 6.71842e-40
  104.  
  105. coeffs: 0.793 0.207
  106.  
  107. ## dscore:: f_4(Base, Fit, Rbase, right2)
  108. ## genstat:: f_4(Base, Fit, right1, right2)
  109.  
  110. details: EHG_highANE WHG 0.002441 1.797075
  111. details: Tajikistan_C_Sarazm WHG -0.030667 -18.475454
  112. dscore: WHG f4: -0.004406 Z: -3.449508
  113.  
  114. details: EHG_highANE Turkey_N -0.002378 -2.604393
  115. details: Tajikistan_C_Sarazm Turkey_N -0.004058 -3.416327
  116. dscore: Turkey_N f4: -0.002726 Z: -3.122000
  117.  
  118. details: EHG_highANE Levant_PPN -0.000812 -0.663439
  119. details: Tajikistan_C_Sarazm Levant_PPN -0.002661 -1.899732
  120. dscore: Levant_PPN f4: -0.001195 Z: -1.042074
  121.  
  122. details: EHG_highANE EHG_Mesolithic 0.011847 8.669668
  123. details: Tajikistan_C_Sarazm EHG_Mesolithic -0.043609 -24.850606
  124. dscore: EHG_Mesolithic f4: 0.000378 Z: 0.287055
  125.  
  126. details: EHG_highANE CHG_Satsurblia -0.007073 -4.523652
  127. details: Tajikistan_C_Sarazm CHG_Satsurblia 0.003644 1.736603
  128. dscore: CHG_Satsurblia f4: -0.004856 Z: -3.218020
  129.  
  130. details: EHG_highANE IRQ_Nemrik9_PPN -0.003435 -2.011496
  131. details: Tajikistan_C_Sarazm IRQ_Nemrik9_PPN 0.005011 2.467720
  132. dscore: IRQ_Nemrik9_PPN f4: -0.001688 Z: -1.047122
  133.  
  134. details: EHG_highANE Iran_GanjDareh_N -0.003592 -3.601063
  135. details: Tajikistan_C_Sarazm Iran_GanjDareh_N 0.013115 9.834518
  136. dscore: Iran_GanjDareh_N f4: -0.000137 Z: -0.143891
  137.  
  138. details: EHG_highANE Russia_Tyumen_HG 0.008929 5.477223
  139. details: Tajikistan_C_Sarazm Russia_Tyumen_HG -0.032391 -16.268305
  140. dscore: Russia_Tyumen_HG f4: 0.000384 Z: 0.247440
  141.  
  142. details: EHG_highANE CHG_Kotias -0.006133 -4.201663
  143. details: Tajikistan_C_Sarazm CHG_Kotias 0.002547 1.384952
  144. dscore: CHG_Kotias f4: -0.004338 Z: -3.156342
  145.  
  146. details: EHG_highANE Russia_Shamanka_EN 0.001717 1.649203
  147. details: Tajikistan_C_Sarazm Russia_Shamanka_EN -0.008657 -6.225398
  148. dscore: Russia_Shamanka_EN f4: -0.000428 Z: -0.426107
  149.  
  150. details: EHG_highANE Turkey_Boncuklu_PPN -0.001710 -1.579895
  151. details: Tajikistan_C_Sarazm Turkey_Boncuklu_PPN -0.005874 -4.191213
  152. dscore: Turkey_Boncuklu_PPN f4: -0.002571 Z: -2.475342
  153.  
  154. details: EHG_highANE Russia_AfontovaGora3 0.009499 4.459512
  155. details: Tajikistan_C_Sarazm Russia_AfontovaGora3 -0.031065 -12.485766
  156. dscore: Russia_AfontovaGora3 f4: 0.001110 Z: 0.546836
  157.  
  158. details: EHG_highANE Serbia_IronGates_Mesolithic 0.004756 4.369569
  159. details: Tajikistan_C_Sarazm Serbia_IronGates_Mesolithic -0.032632 -23.569103
  160. dscore: Serbia_IronGates_Mesolithic f4: -0.002976 Z: -2.852383
  161.  
  162. gendstat: Mbuti.DG WHG -3.450
  163. gendstat: Mbuti.DG Turkey_N -3.122
  164. gendstat: Mbuti.DG Levant_PPN -1.042
  165. gendstat: Mbuti.DG EHG_Mesolithic 0.287
  166. gendstat: Mbuti.DG CHG_Satsurblia -3.218
  167. gendstat: Mbuti.DG IRQ_Nemrik9_PPN -1.047
  168. gendstat: Mbuti.DG Iran_GanjDareh_N -0.144
  169. gendstat: Mbuti.DG Russia_Tyumen_HG 0.247
  170. gendstat: Mbuti.DG CHG_Kotias -3.156
  171. gendstat: Mbuti.DG Russia_Shamanka_EN -0.426
  172. gendstat: Mbuti.DG Turkey_Boncuklu_PPN -2.475
  173. gendstat: Mbuti.DG Russia_AfontovaGora3 0.547
  174. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -2.852
  175. gendstat: WHG Turkey_N 1.568
  176. gendstat: WHG Levant_PPN 2.461
  177. gendstat: WHG EHG_Mesolithic 3.433
  178. gendstat: WHG CHG_Satsurblia -0.257
  179. gendstat: WHG IRQ_Nemrik9_PPN 1.578
  180. gendstat: WHG Iran_GanjDareh_N 3.340
  181. gendstat: WHG Russia_Tyumen_HG 2.747
  182. gendstat: WHG CHG_Kotias 0.042
  183. gendstat: WHG Russia_Shamanka_EN 3.213
  184. gendstat: WHG Turkey_Boncuklu_PPN 1.535
  185. gendstat: WHG Russia_AfontovaGora3 2.631
  186. gendstat: WHG Serbia_IronGates_Mesolithic 1.756
  187. gendstat: Turkey_N Levant_PPN 1.760
  188. gendstat: Turkey_N EHG_Mesolithic 2.546
  189. gendstat: Turkey_N CHG_Satsurblia -1.497
  190. gendstat: Turkey_N IRQ_Nemrik9_PPN 0.719
  191. gendstat: Turkey_N Iran_GanjDareh_N 3.190
  192. gendstat: Turkey_N Russia_Tyumen_HG 2.036
  193. gendstat: Turkey_N CHG_Kotias -1.300
  194. gendstat: Turkey_N Russia_Shamanka_EN 2.568
  195. gendstat: Turkey_N Turkey_Boncuklu_PPN 0.215
  196. gendstat: Turkey_N Russia_AfontovaGora3 1.956
  197. gendstat: Turkey_N Serbia_IronGates_Mesolithic -0.320
  198. gendstat: Levant_PPN EHG_Mesolithic 1.121
  199. gendstat: Levant_PPN CHG_Satsurblia -2.302
  200. gendstat: Levant_PPN IRQ_Nemrik9_PPN -0.299
  201. gendstat: Levant_PPN Iran_GanjDareh_N 0.961
  202. gendstat: Levant_PPN Russia_Tyumen_HG 0.931
  203. gendstat: Levant_PPN CHG_Kotias -2.091
  204. gendstat: Levant_PPN Russia_Shamanka_EN 0.654
  205. gendstat: Levant_PPN Turkey_Boncuklu_PPN -1.254
  206. gendstat: Levant_PPN Russia_AfontovaGora3 1.089
  207. gendstat: Levant_PPN Serbia_IronGates_Mesolithic -1.603
  208. gendstat: EHG_Mesolithic CHG_Satsurblia -2.922
  209. gendstat: EHG_Mesolithic IRQ_Nemrik9_PPN -1.113
  210. gendstat: EHG_Mesolithic Iran_GanjDareh_N -0.378
  211. gendstat: EHG_Mesolithic Russia_Tyumen_HG 0.004
  212. gendstat: EHG_Mesolithic CHG_Kotias -2.880
  213. gendstat: EHG_Mesolithic Russia_Shamanka_EN -0.602
  214. gendstat: EHG_Mesolithic Turkey_Boncuklu_PPN -2.224
  215. gendstat: EHG_Mesolithic Russia_AfontovaGora3 0.372
  216. gendstat: EHG_Mesolithic Serbia_IronGates_Mesolithic -2.865
  217. gendstat: CHG_Satsurblia IRQ_Nemrik9_PPN 1.626
  218. gendstat: CHG_Satsurblia Iran_GanjDareh_N 3.182
  219. gendstat: CHG_Satsurblia Russia_Tyumen_HG 2.656
  220. gendstat: CHG_Satsurblia CHG_Kotias 0.312
  221. gendstat: CHG_Satsurblia Russia_Shamanka_EN 2.835
  222. gendstat: CHG_Satsurblia Turkey_Boncuklu_PPN 1.514
  223. gendstat: CHG_Satsurblia Russia_AfontovaGora3 2.610
  224. gendstat: CHG_Satsurblia Serbia_IronGates_Mesolithic 1.198
  225. gendstat: IRQ_Nemrik9_PPN Iran_GanjDareh_N 0.992
  226. gendstat: IRQ_Nemrik9_PPN Russia_Tyumen_HG 0.972
  227. gendstat: IRQ_Nemrik9_PPN CHG_Kotias -1.455
  228. gendstat: IRQ_Nemrik9_PPN Russia_Shamanka_EN 0.782
  229. gendstat: IRQ_Nemrik9_PPN Turkey_Boncuklu_PPN -0.561
  230. gendstat: IRQ_Nemrik9_PPN Russia_AfontovaGora3 1.171
  231. gendstat: IRQ_Nemrik9_PPN Serbia_IronGates_Mesolithic -0.823
  232. gendstat: Iran_GanjDareh_N Russia_Tyumen_HG 0.327
  233. gendstat: Iran_GanjDareh_N CHG_Kotias -3.134
  234. gendstat: Iran_GanjDareh_N Russia_Shamanka_EN -0.282
  235. gendstat: Iran_GanjDareh_N Turkey_Boncuklu_PPN -2.355
  236. gendstat: Iran_GanjDareh_N Russia_AfontovaGora3 0.628
  237. gendstat: Iran_GanjDareh_N Serbia_IronGates_Mesolithic -2.758
  238. gendstat: Russia_Tyumen_HG CHG_Kotias -2.561
  239. gendstat: Russia_Tyumen_HG Russia_Shamanka_EN -0.550
  240. gendstat: Russia_Tyumen_HG Turkey_Boncuklu_PPN -1.753
  241. gendstat: Russia_Tyumen_HG Russia_AfontovaGora3 0.356
  242. gendstat: Russia_Tyumen_HG Serbia_IronGates_Mesolithic -2.159
  243. gendstat: CHG_Kotias Russia_Shamanka_EN 2.760
  244. gendstat: CHG_Kotias Turkey_Boncuklu_PPN 1.271
  245. gendstat: CHG_Kotias Russia_AfontovaGora3 2.500
  246. gendstat: CHG_Kotias Serbia_IronGates_Mesolithic 0.960
  247. gendstat: Russia_Shamanka_EN Turkey_Boncuklu_PPN -1.991
  248. gendstat: Russia_Shamanka_EN Russia_AfontovaGora3 0.798
  249. gendstat: Russia_Shamanka_EN Serbia_IronGates_Mesolithic -2.422
  250. gendstat: Turkey_Boncuklu_PPN Russia_AfontovaGora3 1.801
  251. gendstat: Turkey_Boncuklu_PPN Serbia_IronGates_Mesolithic -0.411
  252. gendstat: Russia_AfontovaGora3 Serbia_IronGates_Mesolithic -2.108
  253.  
  254. removing /tmp/fsx.288
  255. ##end of qpAdm: 1.870 seconds cpu 0.774 Mbytes in use
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