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- //shared_directory/projects/Fiji.app/ImageJ-linux64 --headless
- -macro //shared_directory/projects/retracted/fiji_scripts/patch_cropper.txt
- java.awt.HeadlessException
- at java.awt.GraphicsEnvironment.checkHeadless(GraphicsEnvironment.java:204)
- at java.awt.Window.<init>(Window.java:536)
- at java.awt.Frame.<init>(Frame.java:420)
- at ij.plugin.frame.PlugInFrame.<init>(PlugInFrame.java:13)
- at ij.plugin.frame.RoiManager.<init>(RoiManager.java:94)
- at ij.macro.Interpreter.getBatchModeRoiManager(Interpreter.java:1875)
- at ij.plugin.frame.RoiManager.getInstance(RoiManager.java:1795)
- at ij.ImagePlus.deleteRoi(ImagePlus.java:1735)
- at ij.ImagePlus.close(ImagePlus.java:391)
- at ij.plugin.Commands.closeImage(Commands.java:136)
- at ij.plugin.Commands.close(Commands.java:83)
- at ij.plugin.Commands.run(Commands.java:29)
- at ij.IJ.runPlugIn(IJ.java:187)
- at ij.Executer.runCommand(Executer.java:137)
- at ij.Executer.run(Executer.java:66)
- at ij.IJ.run(IJ.java:297)
- at ij.IJ.run(IJ.java:272)
- at ij.macro.Functions.doRun(Functions.java:603)
- at ij.macro.Functions.doFunction(Functions.java:96)
- at ij.macro.Interpreter.doStatement(Interpreter.java:230)
- at ij.macro.Interpreter.doStatements(Interpreter.java:218)
- at ij.macro.Interpreter.run(Interpreter.java:115)
- at ij.macro.Interpreter.run(Interpreter.java:85)
- at ij.macro.Interpreter.run(Interpreter.java:96)
- at ij.plugin.Macro_Runner.runMacro(Macro_Runner.java:155)
- at ij.plugin.Macro_Runner.runMacroFile(Macro_Runner.java:139)
- at ij.IJ.runMacroFile(IJ.java:148)
- at net.imagej.legacy.IJ1Helper$4.call(IJ1Helper.java:1056)
- at net.imagej.legacy.IJ1Helper$4.call(IJ1Helper.java:1052)
- at net.imagej.legacy.IJ1Helper.runMacroFriendly(IJ1Helper.java:986)
- at net.imagej.legacy.IJ1Helper.runMacroFile(IJ1Helper.java:1052)
- at net.imagej.legacy.LegacyCommandline$Macro.handle(LegacyCommandline.java:188)
- at org.scijava.console.DefaultConsoleService.processArgs(DefaultConsoleService.java:102)
- at net.imagej.legacy.LegacyConsoleService.processArgs(LegacyConsoleService.java:81)
- at org.scijava.AbstractGateway.launch(AbstractGateway.java:95)
- at net.imagej.Main.launch(Main.java:62)
- at net.imagej.Main.main(Main.java:68)
- at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
- at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
- at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
- at java.lang.reflect.Method.invoke(Method.java:497)
- at net.imagej.launcher.ClassLauncher.launch(ClassLauncher.java:279)
- at net.imagej.launcher.ClassLauncher.run(ClassLauncher.java:186)
- at net.imagej.launcher.ClassLauncher.main(ClassLauncher.java:77)
- Java HotSpot(TM) 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
- Java HotSpot(TM) 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
- java.lang.IllegalArgumentException: Cannot handle app name in ij.gui.YesNoCancelDialog's public <init>(java.awt.Frame parent, java.lang.String title, java.lang.String msg)
- at net.imagej.patcher.CodeHacker.replaceAppNameInCall(CodeHacker.java:446)
- at net.imagej.patcher.LegacyExtensions.insertAppNameHooks(LegacyExtensions.java:419)
- at net.imagej.patcher.LegacyExtensions.injectHooks(LegacyExtensions.java:291)
- at net.imagej.patcher.LegacyInjector.inject(LegacyInjector.java:308)
- at net.imagej.patcher.LegacyInjector.injectHooks(LegacyInjector.java:109)
- at net.imagej.patcher.LegacyEnvironment.initialize(LegacyEnvironment.java:101)
- at net.imagej.patcher.LegacyEnvironment.applyPatches(LegacyEnvironment.java:495)
- at net.imagej.patcher.LegacyInjector.preinit(LegacyInjector.java:397)
- at net.imagej.patcher.LegacyInjector.preinit(LegacyInjector.java:376)
- at net.imagej.legacy.LegacyService.<clinit>(LegacyService.java:134)
- at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
- at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
- at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
- at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
- at java.lang.Class.newInstance(Class.java:442)
- at org.scijava.service.ServiceHelper.createServiceRecursively(ServiceHelper.java:302)
- at org.scijava.service.ServiceHelper.createExactService(ServiceHelper.java:269)
- at org.scijava.service.ServiceHelper.loadService(ServiceHelper.java:231)
- at org.scijava.service.ServiceHelper.createServiceRecursively(ServiceHelper.java:340)
- at org.scijava.service.ServiceHelper.createExactService(ServiceHelper.java:269)
- at org.scijava.service.ServiceHelper.loadService(ServiceHelper.java:231)
- at org.scijava.service.ServiceHelper.loadService(ServiceHelper.java:194)
- at org.scijava.service.ServiceHelper.loadServices(ServiceHelper.java:166)
- at org.scijava.Context.<init>(Context.java:278)
- at org.scijava.Context.<init>(Context.java:234)
- at org.scijava.Context.<init>(Context.java:174)
- at org.scijava.Context.<init>(Context.java:160)
- at net.imagej.ImageJ.<init>(ImageJ.java:77)
- at net.imagej.Main.launch(Main.java:61)
- at net.imagej.Main.main(Main.java:68)
- at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
- at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
- at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
- at java.lang.reflect.Method.invoke(Method.java:497)
- at net.imagej.launcher.ClassLauncher.launch(ClassLauncher.java:279)
- at net.imagej.launcher.ClassLauncher.run(ClassLauncher.java:186)
- at net.imagej.launcher.ClassLauncher.main(ClassLauncher.java:77)
- Caused by: javassist.CannotCompileException: No code replaced!
- at net.imagej.patcher.CodeHacker$EagerExprEditor.instrument(CodeHacker.java:1280)
- at net.imagej.patcher.CodeHacker.replaceAppNameInCall(CodeHacker.java:443)
- ... 36 more
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