API tools faq
paste
misnomer001

spgt=swat_inpe+dali+bmac success

misnomer001
Jan 21st, 2020
179
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 13.98 KB | None | 0 0
raw download clone embed print report
  1. allsnps: YES
  2. ## qpAdm version: 810
  3. seed: 2097649777
  4.  
  5. left pops:
  6. SPGT
  7. Swat_InPe
  8. Dali_MLBA
  9. Bustan_BA
  10.  
  11. right pops:
  12. Sarazm_EN
  13. Ganj_Dareh_N
  14. PPN
  15. Anatolia_N
  16. Iberia_MN
  17. CHG
  18. EEHG
  19. WEHG
  20. WSHG
  21. Onge.DG
  22. Russia_Shamanka_EN.SG
  23. Steppe_Eneolithic
  24. Caucasus_Eneolithic
  25. Kazakhstan_Botai.SG
  26.  
  27. 0 SPGT 78
  28. 1 Swat_InPe 6
  29. 2 Dali_MLBA 3
  30. 3 Bustan_BA 10
  31. 4 Sarazm_EN 2
  32. 5 Ganj_Dareh_N 7
  33. 6 PPN 8
  34. 7 Anatolia_N 22
  35. 8 Iberia_MN 4
  36. 9 CHG 2
  37. 10 EEHG 4
  38. 11 WEHG 36
  39. 12 WSHG 3
  40. 13 Onge.DG 2
  41. 14 Russia_Shamanka_EN.SG 10
  42. 15 Steppe_Eneolithic 3
  43. 16 Caucasus_Eneolithic 3
  44. 17 Kazakhstan_Botai.SG 3
  45. jackknife block size: 0.050
  46. snps: 1150478 indivs: 206
  47. number of blocks for block jackknife: 552
  48. ## ncols: 1150478
  49. coverage: SPGT 1133715
  50. coverage: Swat_InPe 984400
  51. coverage: Dali_MLBA 931588
  52. coverage: Bustan_BA 971774
  53. coverage: Sarazm_EN 867960
  54. coverage: Ganj_Dareh_N 1029695
  55. coverage: PPN 835499
  56. coverage: Anatolia_N 1134099
  57. coverage: Iberia_MN 967760
  58. coverage: CHG 1149558
  59. coverage: EEHG 1029995
  60. coverage: WEHG 1141246
  61. coverage: WSHG 858019
  62. coverage: Onge.DG 1120748
  63. coverage: Russia_Shamanka_EN.SG 1149998
  64. coverage: Steppe_Eneolithic 1017729
  65. coverage: Caucasus_Eneolithic 784983
  66. coverage: Kazakhstan_Botai.SG 1149870
  67. dof (jackknife): 465.081
  68. numsnps used: 1150478
  69. codimension 1
  70. f4info:
  71. f4rank: 2 dof: 11 chisq: 8.762 tail: 0.643877002 dofdiff: 13 chisqdiff: -8.762 taildiff: 1
  72. B:
  73. scale 1.000 1.000
  74. Ganj_Dareh_N -0.503 -0.671
  75. PPN 0.498 -0.496
  76. Anatolia_N 0.774 -0.796
  77. Iberia_MN 0.990 -0.490
  78. CHG 0.196 -0.732
  79. EEHG 1.742 -0.067
  80. WEHG 1.820 -0.301
  81. WSHG 1.235 0.585
  82. Onge.DG 0.096 2.348
  83. Russia_Shamanka_EN.SG 0.422 2.034
  84. Steppe_Eneolithic 0.957 -0.419
  85. Caucasus_Eneolithic 0.321 -0.577
  86. Kazakhstan_Botai.SG 1.343 0.545
  87. A:
  88. scale 563.879 1248.877
  89. Swat_InPe -0.201 0.617
  90. Dali_MLBA 1.648 -0.470
  91. Bustan_BA -0.492 -1.549
  92.  
  93.  
  94. full rank
  95. f4info:
  96. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 8.762 taildiff: 0.643877002
  97. B:
  98. scale 1.000 1.000 1.000
  99. Ganj_Dareh_N -0.510 -0.672 -0.039
  100. PPN 0.493 -0.504 0.296
  101. Anatolia_N 0.764 -0.788 1.971
  102. Iberia_MN 0.981 -0.475 -0.192
  103. CHG 0.187 -0.738 -0.745
  104. EEHG 1.739 -0.048 0.233
  105. WEHG 1.813 -0.279 -0.066
  106. WSHG 1.246 0.588 -2.637
  107. Onge.DG 0.128 2.351 0.135
  108. Russia_Shamanka_EN.SG 0.451 2.038 -0.253
  109. Steppe_Eneolithic 0.955 -0.402 0.249
  110. Caucasus_Eneolithic 0.314 -0.574 0.731
  111. Kazakhstan_Botai.SG 1.350 0.555 0.863
  112. A:
  113. scale 561.455 1256.729 20290.333
  114. Swat_InPe -0.196 0.668 1.420
  115. Dali_MLBA 1.653 -0.503 0.734
  116. Bustan_BA -0.479 -1.517 0.668
  117.  
  118.  
  119. best coefficients: 0.644 0.142 0.213
  120. Jackknife mean: 0.643724139 0.142345409 0.213930453
  121. std. errors: 0.018 0.012 0.019
  122.  
  123. error covariance (* 1000000)
  124. 329 -61 -268
  125. -61 135 -74
  126. -268 -74 342
  127.  
  128.  
  129. summ: SPGT 3 0.643877 0.644 0.142 0.214 329 -61 -268 135 -74 342
  130.  
  131. fixed pat wt dof chisq tail prob
  132. 000 0 11 8.762 0.643877 0.644 0.142 0.213
  133. 001 1 12 99.872 5.89879e-16 0.822 0.178 0.000
  134. 010 1 12 126.072 3.78249e-21 0.741 0.000 0.259
  135. 100 1 12 726.049 0 0.000 0.255 0.745
  136. 011 2 13 220.401 0 1.000 0.000 -0.000
  137. 101 2 13 975.697 0 0.000 1.000 -0.000
  138. 110 2 13 827.313 0 0.000 0.000 1.000
  139. best pat: 000 0.643877 - -
  140. best pat: 001 5.89879e-16 chi(nested): 91.110 p-value for nested model: 1.35887e-21
  141. best pat: 011 8.61519e-40 chi(nested): 120.529 p-value for nested model: 4.84428e-28
  142.  
  143. coeffs: 0.644 0.142 0.213
  144.  
  145. ## dscore:: f_4(Base, Fit, Rbase, right2)
  146. ## genstat:: f_4(Base, Fit, right1, right2)
  147.  
  148. details: Swat_InPe Ganj_Dareh_N -0.000157 -0.952560
  149. details: Dali_MLBA Ganj_Dareh_N -0.001116 -4.430470
  150. details: Bustan_BA Ganj_Dareh_N 0.001229 6.222130
  151. dscore: Ganj_Dareh_N f4: 0.000003 Z: 0.021322
  152.  
  153. details: Swat_InPe PPN -0.000359 -1.914877
  154. details: Dali_MLBA PPN 0.001831 6.045574
  155. details: Bustan_BA PPN 0.000207 1.034534
  156. dscore: PPN f4: 0.000073 Z: 0.516317
  157.  
  158. details: Swat_InPe Anatolia_N -0.000536 -3.562514
  159. details: Dali_MLBA Anatolia_N 0.002788 10.527048
  160. details: Bustan_BA Anatolia_N 0.000346 1.924076
  161. dscore: Anatolia_N f4: 0.000125 Z: 1.075981
  162.  
  163. details: Swat_InPe Iberia_MN -0.000560 -3.366537
  164. details: Dali_MLBA Iberia_MN 0.003252 10.801289
  165. details: Bustan_BA Iberia_MN -0.000263 -1.335324
  166. dscore: Iberia_MN f4: 0.000046 Z: 0.354547
  167.  
  168. details: Swat_InPe CHG -0.000508 -2.822045
  169. details: Dali_MLBA CHG 0.000937 3.209886
  170. details: Bustan_BA CHG 0.000684 3.276970
  171. dscore: CHG f4: -0.000048 Z: -0.354099
  172.  
  173. details: Swat_InPe EEHG -0.000607 -3.202855
  174. details: Dali_MLBA EEHG 0.005277 17.073298
  175. details: Bustan_BA EEHG -0.001419 -6.874091
  176. dscore: EEHG f4: 0.000056 Z: 0.400439
  177.  
  178. details: Swat_InPe WEHG -0.000748 -4.394591
  179. details: Dali_MLBA WEHG 0.005625 17.905882
  180. details: Bustan_BA WEHG -0.001206 -6.349901
  181. dscore: WEHG f4: 0.000061 Z: 0.470721
  182.  
  183. details: Swat_InPe WSHG -0.000364 -1.883781
  184. details: Dali_MLBA WSHG 0.003415 11.015284
  185. details: Bustan_BA WSHG -0.001901 -9.244232
  186. dscore: WSHG f4: -0.000155 Z: -1.113206
  187.  
  188. details: Swat_InPe Onge.DG 0.001264 6.366421
  189. details: Dali_MLBA Onge.DG -0.000419 -1.327897
  190. details: Bustan_BA Onge.DG -0.002953 -13.194699
  191. dscore: Onge.DG f4: 0.000124 Z: 0.832998
  192.  
  193. details: Swat_InPe Russia_Shamanka_EN.SG 0.000932 5.224407
  194. details: Dali_MLBA Russia_Shamanka_EN.SG 0.000638 2.171647
  195. details: Bustan_BA Russia_Shamanka_EN.SG -0.002883 -14.109137
  196. dscore: Russia_Shamanka_EN.SG f4: 0.000076 Z: 0.573840
  197.  
  198. details: Swat_InPe Steppe_Eneolithic -0.000507 -3.190113
  199. details: Dali_MLBA Steppe_Eneolithic 0.003119 11.151863
  200. details: Bustan_BA Steppe_Eneolithic -0.000353 -1.833745
  201. dscore: Steppe_Eneolithic f4: 0.000041 Z: 0.344075
  202.  
  203. details: Swat_InPe Caucasus_Eneolithic -0.000317 -1.732528
  204. details: Dali_MLBA Caucasus_Eneolithic 0.001345 4.629547
  205. details: Bustan_BA Caucasus_Eneolithic 0.000450 2.206948
  206. dscore: Caucasus_Eneolithic f4: 0.000083 Z: 0.602000
  207.  
  208. details: Swat_InPe Kazakhstan_Botai.SG -0.000126 -0.719385
  209. details: Dali_MLBA Kazakhstan_Botai.SG 0.003866 12.931905
  210. details: Bustan_BA Kazakhstan_Botai.SG -0.001809 -9.184857
  211. dscore: Kazakhstan_Botai.SG f4: 0.000082 Z: 0.633511
  212.  
  213. gendstat: Sarazm_EN Ganj_Dareh_N 0.021
  214. gendstat: Sarazm_EN PPN 0.516
  215. gendstat: Sarazm_EN Anatolia_N 1.076
  216. gendstat: Sarazm_EN Iberia_MN 0.355
  217. gendstat: Sarazm_EN CHG -0.354
  218. gendstat: Sarazm_EN EEHG 0.400
  219. gendstat: Sarazm_EN WEHG 0.471
  220. gendstat: Sarazm_EN WSHG -1.113
  221. gendstat: Sarazm_EN Onge.DG 0.833
  222. gendstat: Sarazm_EN Russia_Shamanka_EN.SG 0.574
  223. gendstat: Sarazm_EN Steppe_Eneolithic 0.344
  224. gendstat: Sarazm_EN Caucasus_Eneolithic 0.602
  225. gendstat: Sarazm_EN Kazakhstan_Botai.SG 0.634
  226. gendstat: Ganj_Dareh_N PPN 0.535
  227. gendstat: Ganj_Dareh_N Anatolia_N 1.158
  228. gendstat: Ganj_Dareh_N Iberia_MN 0.351
  229. gendstat: Ganj_Dareh_N CHG -0.395
  230. gendstat: Ganj_Dareh_N EEHG 0.387
  231. gendstat: Ganj_Dareh_N WEHG 0.480
  232. gendstat: Ganj_Dareh_N WSHG -1.160
  233. gendstat: Ganj_Dareh_N Onge.DG 0.845
  234. gendstat: Ganj_Dareh_N Russia_Shamanka_EN.SG 0.575
  235. gendstat: Ganj_Dareh_N Steppe_Eneolithic 0.329
  236. gendstat: Ganj_Dareh_N Caucasus_Eneolithic 0.573
  237. gendstat: Ganj_Dareh_N Kazakhstan_Botai.SG 0.628
  238. gendstat: PPN Anatolia_N 0.520
  239. gendstat: PPN Iberia_MN -0.230
  240. gendstat: PPN CHG -0.914
  241. gendstat: PPN EEHG -0.117
  242. gendstat: PPN WEHG -0.102
  243. gendstat: PPN WSHG -1.598
  244. gendstat: PPN Onge.DG 0.348
  245. gendstat: PPN Russia_Shamanka_EN.SG 0.024
  246. gendstat: PPN Steppe_Eneolithic -0.252
  247. gendstat: PPN Caucasus_Eneolithic 0.073
  248. gendstat: PPN Kazakhstan_Botai.SG 0.068
  249. gendstat: Anatolia_N Iberia_MN -0.937
  250. gendstat: Anatolia_N CHG -1.557
  251. gendstat: Anatolia_N EEHG -0.612
  252. gendstat: Anatolia_N WEHG -0.800
  253. gendstat: Anatolia_N WSHG -2.343
  254. gendstat: Anatolia_N Onge.DG -0.006
  255. gendstat: Anatolia_N Russia_Shamanka_EN.SG -0.476
  256. gendstat: Anatolia_N Steppe_Eneolithic -0.851
  257. gendstat: Anatolia_N Caucasus_Eneolithic -0.354
  258. gendstat: Anatolia_N Kazakhstan_Botai.SG -0.403
  259. gendstat: Iberia_MN CHG -0.737
  260. gendstat: Iberia_MN EEHG 0.085
  261. gendstat: Iberia_MN WEHG 0.157
  262. gendstat: Iberia_MN WSHG -1.506
  263. gendstat: Iberia_MN Onge.DG 0.576
  264. gendstat: Iberia_MN Russia_Shamanka_EN.SG 0.262
  265. gendstat: Iberia_MN Steppe_Eneolithic -0.037
  266. gendstat: Iberia_MN Caucasus_Eneolithic 0.279
  267. gendstat: Iberia_MN Kazakhstan_Botai.SG 0.293
  268. gendstat: CHG EEHG 0.754
  269. gendstat: CHG WEHG 0.887
  270. gendstat: CHG WSHG -0.775
  271. gendstat: CHG Onge.DG 1.191
  272. gendstat: CHG Russia_Shamanka_EN.SG 0.955
  273. gendstat: CHG Steppe_Eneolithic 0.746
  274. gendstat: CHG Caucasus_Eneolithic 0.940
  275. gendstat: CHG Kazakhstan_Botai.SG 0.964
  276. gendstat: EEHG WEHG 0.043
  277. gendstat: EEHG WSHG -1.647
  278. gendstat: EEHG Onge.DG 0.461
  279. gendstat: EEHG Russia_Shamanka_EN.SG 0.160
  280. gendstat: EEHG Steppe_Eneolithic -0.125
  281. gendstat: EEHG Caucasus_Eneolithic 0.181
  282. gendstat: EEHG Kazakhstan_Botai.SG 0.227
  283. gendstat: WEHG WSHG -1.810
  284. gendstat: WEHG Onge.DG 0.518
  285. gendstat: WEHG Russia_Shamanka_EN.SG 0.152
  286. gendstat: WEHG Steppe_Eneolithic -0.183
  287. gendstat: WEHG Caucasus_Eneolithic 0.173
  288. gendstat: WEHG Kazakhstan_Botai.SG 0.207
  289. gendstat: WSHG Onge.DG 1.878
  290. gendstat: WSHG Russia_Shamanka_EN.SG 1.876
  291. gendstat: WSHG Steppe_Eneolithic 1.603
  292. gendstat: WSHG Caucasus_Eneolithic 1.632
  293. gendstat: WSHG Kazakhstan_Botai.SG 2.146
  294. gendstat: Onge.DG Russia_Shamanka_EN.SG -0.427
  295. gendstat: Onge.DG Steppe_Eneolithic -0.622
  296. gendstat: Onge.DG Caucasus_Eneolithic -0.258
  297. gendstat: Onge.DG Kazakhstan_Botai.SG -0.326
  298. gendstat: Russia_Shamanka_EN.SG Steppe_Eneolithic -0.307
  299. gendstat: Russia_Shamanka_EN.SG Caucasus_Eneolithic 0.049
  300. gendstat: Russia_Shamanka_EN.SG Kazakhstan_Botai.SG 0.058
  301. gendstat: Steppe_Eneolithic Caucasus_Eneolithic 0.314
  302. gendstat: Steppe_Eneolithic Kazakhstan_Botai.SG 0.376
  303. gendstat: Caucasus_Eneolithic Kazakhstan_Botai.SG -0.007
  304.  
  305. ## end of run
Add Comment
Please, Sign In to add comment
Public Pastes
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!