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misnomer001

Ror Fail namazga + sintashta + onge

misnomer001
Sep 7th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. popleft: left
  5. popright: right
  6. details: YES
  7. allsnps: YES
  8. inbreed: YES
  9. oldallsnps: NO
  10. S1: newpush2
  11. S1X: newpush2
  12. indivname: newpush2.ind
  13. snpname: newpush2.snp
  14. genotypename: newpush2.geno
  15. ## qpAdm version: 1520
  16. seed: 1789434486
  17. inbreed set YES
  18. inbreed set YES
  19. tmp: /tmp/fsx.5216
  20.  
  21. left pops:
  22. Ror
  23. Turkmenistan_C_Namazga.SG
  24. ONG.SG
  25. Russia_MLBA_Sintashta
  26.  
  27. right pops:
  28. Mbuti.DG
  29. EHG
  30. CHG
  31. Russia_Shamanka_Eneolithic.SG
  32. WSHG
  33. PPN
  34. Serbia_IronGates_Mesolithic
  35. Iran_GanjDareh_N
  36. Turkey_N
  37. Tarim_EMBA1
  38.  
  39. codimension 1
  40. f4info:
  41. f4rank: 2 dof: 7 chisq: 69.324 tail: 2.02348201e-12 dofdiff: 9 chisqdiff: -69.324 taildiff: 1
  42. B:
  43. scale 1.000 1.000
  44. EHG 1.189 0.637
  45. CHG 0.988 -1.248
  46. Russia_Shamanka_Eneolithic.SG -0.620 1.141
  47. WSHG 0.868 0.368
  48. PPN 1.103 -0.066
  49. Serbia_IronGates_Mesolithic 1.324 1.401
  50. Iran_GanjDareh_N 0.814 -1.891
  51. Turkey_N 1.195 0.210
  52. Tarim_EMBA1 0.640 0.108
  53. A:
  54. scale 70.535 226.921
  55. Turkmenistan_C_Namazga.SG 0.096 -1.271
  56. ONG.SG -1.502 0.705
  57. Russia_MLBA_Sintashta 0.857 0.942
  58.  
  59.  
  60. full rank
  61. f4info:
  62. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 7 chisqdiff: 69.324 taildiff: 2.02348201e-12
  63. B:
  64. scale 152.565 44.176 80.601
  65. EHG -0.820 -1.115 1.310
  66. CHG 1.160 -1.134 0.550
  67. Russia_Shamanka_Eneolithic.SG -1.337 0.673 -0.272
  68. WSHG -0.789 -0.889 0.879
  69. PPN 0.203 -1.090 1.052
  70. Serbia_IronGates_Mesolithic -1.005 -1.056 1.783
  71. Iran_GanjDareh_N 1.732 -1.040 0.181
  72. Turkey_N -0.036 -1.132 1.243
  73. Tarim_EMBA1 -0.721 -0.750 0.525
  74. A:
  75. scale 1.732 1.732 1.732
  76. Turkmenistan_C_Namazga.SG 1.732 0.000 0.000
  77. ONG.SG 0.000 1.732 0.000
  78. Russia_MLBA_Sintashta 0.000 0.000 1.732
  79.  
  80.  
  81. best coefficients: 0.401 0.234 0.365
  82. totmean: 0.401 0.234 0.365
  83. boot mean: 0.401 0.234 0.365
  84. std. errors: 0.013 0.007 0.011
  85.  
  86. error covariance (* 1,000,000)
  87. 176 -52 -124
  88. -52 47 5
  89. -124 5 119
  90.  
  91.  
  92. summ: Ror 3 0.000000 0.401 0.234 0.365 176 -52 -124 47 5 ...
  93. 119
  94.  
  95. fixed pat wt dof chisq tail prob
  96. 000 0 7 69.324 2.02348e-12 0.401 0.234 0.365
  97. 001 1 8 597.424 0 0.800 0.200 0.000
  98. 010 1 8 775.805 0 0.785 0.000 0.215
  99. 100 1 8 1001.432 0 0.000 0.373 0.627
  100. 011 2 9 866.677 0 1.000 0.000 0.000
  101. 101 2 9 2519.849 0 0.000 1.000 0.000
  102. 110 2 9 3542.345 0 0.000 0.000 1.000
  103. best pat: 000 2.02348e-12 - -
  104. best pat: 001 8.37695e-124 chi(nested): 528.100 p-value for nested model: 7.33121e-117
  105. best pat: 011 9.33815e-181 chi(nested): 269.253 p-value for nested model: 1.65062e-60
  106.  
  107. coeffs: 0.401 0.234 0.365
  108.  
  109. ## dscore:: f_4(Base, Fit, Rbase, right2)
  110. ## genstat:: f_4(Base, Fit, right1, right2)
  111.  
  112. details: Turkmenistan_C_Namazga.SG EHG -0.005376 -5.697242
  113. details: ONG.SG EHG -0.025230 -23.401308
  114. details: Russia_MLBA_Sintashta EHG 0.016248 28.174971
  115. dscore: EHG f4: -0.002118 Z: -3.865557
  116.  
  117. details: Turkmenistan_C_Namazga.SG CHG 0.007602 8.175907
  118. details: ONG.SG CHG -0.025660 -23.455655
  119. details: Russia_MLBA_Sintashta CHG 0.006819 12.327785
  120. dscore: CHG f4: -0.000466 Z: -0.861418
  121.  
  122. details: Turkmenistan_C_Namazga.SG Russia_Shamanka_Eneolithic.SG -0.008765 -11.147543
  123. details: ONG.SG Russia_Shamanka_Eneolithic.SG 0.015229 15.550728
  124. details: Russia_MLBA_Sintashta Russia_Shamanka_Eneolithic.SG -0.003376 -6.581850
  125. dscore: Russia_Shamanka_Eneolithic.SG f4: -0.001182 Z: -2.465038
  126.  
  127. details: Turkmenistan_C_Namazga.SG WSHG -0.005170 -4.922204
  128. details: ONG.SG WSHG -0.020130 -17.282281
  129. details: Russia_MLBA_Sintashta WSHG 0.010907 17.905957
  130. dscore: WSHG f4: -0.002795 Z: -4.750581
  131.  
  132. details: Turkmenistan_C_Namazga.SG PPN 0.001332 1.310141
  133. details: ONG.SG PPN -0.024685 -23.077150
  134. details: Russia_MLBA_Sintashta PPN 0.013047 22.309007
  135. dscore: PPN f4: -0.000473 Z: -0.802145
  136.  
  137. details: Turkmenistan_C_Namazga.SG Serbia_IronGates_Mesolithic -0.006584 -8.226177
  138. details: ONG.SG Serbia_IronGates_Mesolithic -0.023909 -24.035907
  139. details: Russia_MLBA_Sintashta Serbia_IronGates_Mesolithic 0.022116 43.841623
  140. dscore: Serbia_IronGates_Mesolithic f4: -0.000148 Z: -0.321823
  141.  
  142. details: Turkmenistan_C_Namazga.SG Iran_GanjDareh_N 0.011353 13.418441
  143. details: ONG.SG Iran_GanjDareh_N -0.023534 -25.003529
  144. details: Russia_MLBA_Sintashta Iran_GanjDareh_N 0.002240 4.625492
  145. dscore: Iran_GanjDareh_N f4: -0.000140 Z: -0.285842
  146.  
  147. details: Turkmenistan_C_Namazga.SG Turkey_N -0.000234 -0.312132
  148. details: ONG.SG Turkey_N -0.025618 -28.254983
  149. details: Russia_MLBA_Sintashta Turkey_N 0.015417 33.822186
  150. dscore: Turkey_N f4: -0.000453 Z: -1.044624
  151.  
  152. details: Turkmenistan_C_Namazga.SG Tarim_EMBA1 -0.004726 -5.077286
  153. details: ONG.SG Tarim_EMBA1 -0.016985 -15.540203
  154. details: Russia_MLBA_Sintashta Tarim_EMBA1 0.006517 10.949753
  155. dscore: Tarim_EMBA1 f4: -0.003485 Z: -6.438367
  156.  
  157. gendstat: Mbuti.DG EHG -3.866
  158. gendstat: Mbuti.DG CHG -0.861
  159. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG -2.465
  160. gendstat: Mbuti.DG WSHG -4.751
  161. gendstat: Mbuti.DG PPN -0.802
  162. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -0.322
  163. gendstat: Mbuti.DG Iran_GanjDareh_N -0.286
  164. gendstat: Mbuti.DG Turkey_N -1.045
  165. gendstat: Mbuti.DG Tarim_EMBA1 -6.438
  166. gendstat: EHG CHG 2.804
  167. gendstat: EHG Russia_Shamanka_Eneolithic.SG 1.876
  168. gendstat: EHG WSHG -1.324
  169. gendstat: EHG PPN 2.646
  170. gendstat: EHG Serbia_IronGates_Mesolithic 4.592
  171. gendstat: EHG Iran_GanjDareh_N 3.644
  172. gendstat: EHG Turkey_N 3.428
  173. gendstat: EHG Tarim_EMBA1 -2.848
  174. gendstat: CHG Russia_Shamanka_Eneolithic.SG -1.310
  175. gendstat: CHG WSHG -3.690
  176. gendstat: CHG PPN -0.011
  177. gendstat: CHG Serbia_IronGates_Mesolithic 0.633
  178. gendstat: CHG Iran_GanjDareh_N 0.646
  179. gendstat: CHG Turkey_N 0.028
  180. gendstat: CHG Tarim_EMBA1 -5.248
  181. gendstat: Russia_Shamanka_Eneolithic.SG WSHG -3.048
  182. gendstat: Russia_Shamanka_Eneolithic.SG PPN 1.169
  183. gendstat: Russia_Shamanka_Eneolithic.SG Serbia_IronGates_Mesolithic 2.410
  184. gendstat: Russia_Shamanka_Eneolithic.SG Iran_GanjDareh_N 2.155
  185. gendstat: Russia_Shamanka_Eneolithic.SG Turkey_N 1.714
  186. gendstat: Russia_Shamanka_Eneolithic.SG Tarim_EMBA1 -5.092
  187. gendstat: WSHG PPN 3.456
  188. gendstat: WSHG Serbia_IronGates_Mesolithic 5.326
  189. gendstat: WSHG Iran_GanjDareh_N 4.626
  190. gendstat: WSHG Turkey_N 4.391
  191. gendstat: WSHG Tarim_EMBA1 -1.490
  192. gendstat: PPN Serbia_IronGates_Mesolithic 0.599
  193. gendstat: PPN Iran_GanjDareh_N 0.556
  194. gendstat: PPN Turkey_N 0.042
  195. gendstat: PPN Tarim_EMBA1 -4.605
  196. gendstat: Serbia_IronGates_Mesolithic Iran_GanjDareh_N 0.018
  197. gendstat: Serbia_IronGates_Mesolithic Turkey_N -0.928
  198. gendstat: Serbia_IronGates_Mesolithic Tarim_EMBA1 -7.001
  199. gendstat: Iran_GanjDareh_N Turkey_N -0.755
  200. gendstat: Iran_GanjDareh_N Tarim_EMBA1 -6.489
  201. gendstat: Turkey_N Tarim_EMBA1 -6.136
  202.  
  203. removing /tmp/fsx.5216
  204. ##end of qpAdm: 5.364 seconds cpu 0.385 Mbytes in use
  205.  
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