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misnomer001

swatnosteppe=ivcp1+bmac+sintashta pass

misnomer001
Aug 16th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. popleft: left
  5. popright: right
  6. details: YES
  7. allsnps: YES
  8. inbreed: NO
  9. oldallsnps: NO
  10. S1: newpush1
  11. S1X: newpush1
  12. indivname: newpush1.ind
  13. snpname: newpush1.snp
  14. genotypename: newpush1.geno
  15. ## qpAdm version: 1520
  16. seed: 1364090819
  17. inbreed set NO
  18. inbreed set NO
  19. tmp: /tmp/fsx.28213
  20.  
  21. left pops:
  22. Swat_nosteppe
  23. IVCp1
  24. Uzbekistan_Dzharkutan_BA_1
  25. Russia_MLBA_Sintashta
  26. Tarim_EMBA1
  27.  
  28. right pops:
  29. Mbuti.DG
  30. CHG
  31. EHG
  32. China_YR_MN
  33. Turkey_Boncuklu_N
  34. Russia_Shamanka_Eneolithic.SG
  35. WSHG
  36. Turkey_N
  37. PPN
  38. Serbia_IronGates_Mesolithic
  39. Iran_GanjDareh_N
  40. ONG.SG
  41.  
  42. codimension 1
  43. f4info:
  44. f4rank: 3 dof: 8 chisq: 10.852 tail: 0.210222689 dofdiff: 10 chisqdiff: -10.852 taildiff: 1
  45. B:
  46. scale 1.000 1.000 1.000
  47. CHG 0.207 0.768 -0.957
  48. EHG 1.979 -0.022 0.215
  49. China_YR_MN 0.357 -0.963 0.432
  50. Turkey_Boncuklu_N 0.454 1.299 0.745
  51. Russia_Shamanka_Eneolithic.SG 0.669 -1.027 0.204
  52. WSHG 2.216 -1.005 -0.834
  53. Turkey_N 0.314 1.379 0.338
  54. PPN 0.219 1.193 -0.132
  55. Serbia_IronGates_Mesolithic 1.079 1.265 1.761
  56. Iran_GanjDareh_N -0.179 0.377 -2.236
  57. ONG.SG 0.088 -0.814 0.572
  58. A:
  59. scale 69.252 120.099 395.669
  60. IVCp1 -0.149 -0.312 0.372
  61. Uzbekistan_Dzharkutan_BA_1 0.226 1.029 -1.786
  62. Russia_MLBA_Sintashta 0.875 1.504 0.605
  63. Tarim_EMBA1 1.778 -0.763 -0.554
  64.  
  65.  
  66. full rank
  67. f4info:
  68. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 8 chisqdiff: 10.852 taildiff: 0.210222689
  69. B:
  70. scale 276.463 106.236 56.156 37.115
  71. CHG -0.756 1.293 0.631 0.092
  72. EHG -1.246 0.576 1.420 1.900
  73. China_YR_MN -0.032 -1.012 -0.408 0.538
  74. Turkey_Boncuklu_N -1.053 1.016 1.318 0.099
  75. Russia_Shamanka_Eneolithic.SG 0.057 -0.823 -0.239 0.867
  76. WSHG -0.909 0.283 0.810 2.412
  77. Turkey_N -1.337 1.200 1.226 -0.037
  78. PPN -1.282 1.232 0.992 -0.061
  79. Serbia_IronGates_Mesolithic -1.361 0.686 1.811 0.645
  80. Iran_GanjDareh_N -1.026 1.354 -0.051 -0.136
  81. ONG.SG 0.776 -0.962 -0.445 0.262
  82. A:
  83. scale 2.000 2.000 2.000 2.000
  84. IVCp1 2.000 0.000 0.000 0.000
  85. Uzbekistan_Dzharkutan_BA_1 0.000 2.000 0.000 0.000
  86. Russia_MLBA_Sintashta 0.000 0.000 2.000 0.000
  87. Tarim_EMBA1 0.000 0.000 0.000 2.000
  88.  
  89.  
  90. best coefficients: 0.762 0.170 0.050 0.017
  91. totmean: 0.762 0.170 0.050 0.017
  92. boot mean: 0.763 0.170 0.051 0.017
  93. std. errors: 0.034 0.039 0.021 0.012
  94.  
  95. error covariance (* 1,000,000)
  96. 1137 -1106 212 -243
  97. -1106 1494 -571 184
  98. 212 -571 450 -91
  99. -243 184 -91 150
  100.  
  101.  
  102. summ: Swat_nosteppe 4 0.210223 0.763 0.170 0.051 0.017 1137 -1106 212 -243 1494 ...
  103. -571 184 450 -91 150
  104.  
  105. fixed pat wt dof chisq tail prob
  106. 0000 0 8 10.852 0.210223 0.762 0.170 0.050 0.017
  107. 0001 1 9 14.286 0.112505 0.791 0.150 0.059 0.000
  108. 0010 1 9 16.728 0.0531515 0.747 0.227 0.000 0.026
  109. 0100 1 9 29.801 0.00047433 0.892 0.000 0.112 -0.004 infeasible
  110. 1000 1 9 888.027 0 0.000 1.032 -0.248 0.215 infeasible
  111. 0011 2 10 22.475 0.0128604 0.790 0.210 0.000 0.000
  112. 0101 2 10 29.181 0.00116479 0.889 0.000 0.111 0.000
  113. 0110 2 10 63.713 7.14085e-10 0.997 0.000 0.000 0.003
  114. 1001 2 10 1205.361 0 0.000 1.204 -0.204 0.000 infeasible
  115. 1010 2 10 1049.343 0 0.000 0.823 0.000 0.177
  116. 1100 2 10 3317.048 0 0.000 0.000 0.622 0.378
  117. 0111 3 11 67.499 3.64037e-10 1.000 0.000 0.000 0.000
  118. 1011 3 11 1304.386 0 0.000 1.000 0.000 0.000
  119. 1101 3 11 3712.698 0 0.000 0.000 1.000 0.000
  120. 1110 3 11 4497.960 0 0.000 0.000 0.000 1.000
  121. best pat: 0000 0.210223 - -
  122. best pat: 0001 0.112505 chi(nested): 3.434 p-value for nested model: 0.0638657
  123. best pat: 0011 0.0128604 chi(nested): 8.189 p-value for nested model: 0.00421527
  124. best pat: 0111 3.64037e-10 chi(nested): 45.024 p-value for nested model: 1.94608e-11
  125.  
  126. coeffs: 0.762 0.170 0.050 0.017
  127.  
  128. ## dscore:: f_4(Base, Fit, Rbase, right2)
  129. ## genstat:: f_4(Base, Fit, right1, right2)
  130.  
  131. details: IVCp1 CHG -0.002735 -2.273588
  132. details: Uzbekistan_Dzharkutan_BA_1 CHG 0.012170 13.619817
  133. details: Russia_MLBA_Sintashta CHG 0.011241 13.918039
  134. details: Tarim_EMBA1 CHG 0.002466 2.155469
  135. dscore: CHG f4: 0.000600 Z: 0.604992
  136.  
  137. details: IVCp1 EHG -0.004506 -3.685053
  138. details: Uzbekistan_Dzharkutan_BA_1 EHG 0.005418 6.442814
  139. details: Russia_MLBA_Sintashta EHG 0.025287 31.625231
  140. details: Tarim_EMBA1 EHG 0.051199 39.014192
  141. dscore: EHG f4: -0.000343 Z: -0.343250
  142.  
  143. details: IVCp1 China_YR_MN -0.000115 -0.098828
  144. details: Uzbekistan_Dzharkutan_BA_1 China_YR_MN -0.009524 -12.044413
  145. details: Russia_MLBA_Sintashta China_YR_MN -0.007258 -9.780113
  146. details: Tarim_EMBA1 China_YR_MN 0.014506 12.754905
  147. dscore: China_YR_MN f4: -0.001823 Z: -1.930678
  148.  
  149. details: IVCp1 Turkey_Boncuklu_N -0.003809 -3.276482
  150. details: Uzbekistan_Dzharkutan_BA_1 Turkey_Boncuklu_N 0.009563 12.345545
  151. details: Russia_MLBA_Sintashta Turkey_Boncuklu_N 0.023475 31.482347
  152. details: Tarim_EMBA1 Turkey_Boncuklu_N 0.002673 2.573657
  153. dscore: Turkey_Boncuklu_N f4: -0.000043 Z: -0.044994
  154.  
  155. details: IVCp1 Russia_Shamanka_Eneolithic.SG 0.000205 0.204908
  156. details: Uzbekistan_Dzharkutan_BA_1 Russia_Shamanka_Eneolithic.SG -0.007743 -10.096184
  157. details: Russia_MLBA_Sintashta Russia_Shamanka_Eneolithic.SG -0.004254 -5.948541
  158. details: Tarim_EMBA1 Russia_Shamanka_Eneolithic.SG 0.023369 21.803200
  159. dscore: Russia_Shamanka_Eneolithic.SG f4: -0.000970 Z: -1.185254
  160.  
  161. details: IVCp1 WSHG -0.003286 -2.572386
  162. details: Uzbekistan_Dzharkutan_BA_1 WSHG 0.002663 3.009342
  163. details: Russia_MLBA_Sintashta WSHG 0.014432 16.731168
  164. details: Tarim_EMBA1 WSHG 0.065000 48.702062
  165. dscore: WSHG f4: -0.000190 Z: -0.182504
  166.  
  167. details: IVCp1 Turkey_N -0.004836 -4.918467
  168. details: Uzbekistan_Dzharkutan_BA_1 Turkey_N 0.011297 17.312813
  169. details: Russia_MLBA_Sintashta Turkey_N 0.021825 34.280953
  170. details: Tarim_EMBA1 Turkey_N -0.000998 -1.093240
  171. dscore: Turkey_N f4: -0.000677 Z: -0.851794
  172.  
  173. details: IVCp1 PPN -0.004638 -3.633895
  174. details: Uzbekistan_Dzharkutan_BA_1 PPN 0.011593 14.064503
  175. details: Russia_MLBA_Sintashta PPN 0.017658 21.818231
  176. details: Tarim_EMBA1 PPN -0.001653 -1.488960
  177. dscore: PPN f4: -0.000697 Z: -0.672433
  178.  
  179. details: IVCp1 Serbia_IronGates_Mesolithic -0.004922 -4.482930
  180. details: Uzbekistan_Dzharkutan_BA_1 Serbia_IronGates_Mesolithic 0.006454 9.025210
  181. details: Russia_MLBA_Sintashta Serbia_IronGates_Mesolithic 0.032258 44.125111
  182. details: Tarim_EMBA1 Serbia_IronGates_Mesolithic 0.017386 16.249889
  183. dscore: Serbia_IronGates_Mesolithic f4: -0.000722 Z: -0.808144
  184.  
  185. details: IVCp1 Iran_GanjDareh_N -0.003711 -3.429702
  186. details: Uzbekistan_Dzharkutan_BA_1 Iran_GanjDareh_N 0.012742 17.056219
  187. details: Russia_MLBA_Sintashta Iran_GanjDareh_N -0.000899 -1.351695
  188. details: Tarim_EMBA1 Iran_GanjDareh_N -0.003662 -3.610106
  189. dscore: Iran_GanjDareh_N f4: -0.000766 Z: -0.863564
  190.  
  191. details: IVCp1 ONG.SG 0.002806 2.545085
  192. details: Uzbekistan_Dzharkutan_BA_1 ONG.SG -0.009053 -12.118809
  193. details: Russia_MLBA_Sintashta ONG.SG -0.007920 -10.789940
  194. details: Tarim_EMBA1 ONG.SG 0.007051 6.663329
  195. dscore: ONG.SG f4: 0.000319 Z: 0.352935
  196.  
  197. gendstat: Mbuti.DG CHG 0.605
  198. gendstat: Mbuti.DG EHG -0.343
  199. gendstat: Mbuti.DG China_YR_MN -1.931
  200. gendstat: Mbuti.DG Turkey_Boncuklu_N -0.045
  201. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG -1.185
  202. gendstat: Mbuti.DG WSHG -0.183
  203. gendstat: Mbuti.DG Turkey_N -0.852
  204. gendstat: Mbuti.DG PPN -0.672
  205. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -0.808
  206. gendstat: Mbuti.DG Iran_GanjDareh_N -0.864
  207. gendstat: Mbuti.DG ONG.SG 0.353
  208. gendstat: CHG EHG -0.871
  209. gendstat: CHG China_YR_MN -2.055
  210. gendstat: CHG Turkey_Boncuklu_N -0.665
  211. gendstat: CHG Russia_Shamanka_Eneolithic.SG -1.533
  212. gendstat: CHG WSHG -0.709
  213. gendstat: CHG Turkey_N -1.419
  214. gendstat: CHG PPN -1.123
  215. gendstat: CHG Serbia_IronGates_Mesolithic -1.390
  216. gendstat: CHG Iran_GanjDareh_N -1.497
  217. gendstat: CHG ONG.SG -0.247
  218. gendstat: EHG China_YR_MN -1.381
  219. gendstat: EHG Turkey_Boncuklu_N 0.320
  220. gendstat: EHG Russia_Shamanka_Eneolithic.SG -0.670
  221. gendstat: EHG WSHG 0.173
  222. gendstat: EHG Turkey_N -0.416
  223. gendstat: EHG PPN -0.334
  224. gendstat: EHG Serbia_IronGates_Mesolithic -0.502
  225. gendstat: EHG Iran_GanjDareh_N -0.441
  226. gendstat: EHG ONG.SG 0.608
  227. gendstat: China_YR_MN Turkey_Boncuklu_N 1.705
  228. gendstat: China_YR_MN Russia_Shamanka_Eneolithic.SG 1.283
  229. gendstat: China_YR_MN WSHG 1.482
  230. gendstat: China_YR_MN Turkey_N 1.243
  231. gendstat: China_YR_MN PPN 1.012
  232. gendstat: China_YR_MN Serbia_IronGates_Mesolithic 1.164
  233. gendstat: China_YR_MN Iran_GanjDareh_N 1.031
  234. gendstat: China_YR_MN ONG.SG 2.465
  235. gendstat: Turkey_Boncuklu_N Russia_Shamanka_Eneolithic.SG -1.037
  236. gendstat: Turkey_Boncuklu_N WSHG -0.145
  237. gendstat: Turkey_Boncuklu_N Turkey_N -1.085
  238. gendstat: Turkey_Boncuklu_N PPN -0.696
  239. gendstat: Turkey_Boncuklu_N Serbia_IronGates_Mesolithic -0.918
  240. gendstat: Turkey_Boncuklu_N Iran_GanjDareh_N -0.809
  241. gendstat: Turkey_Boncuklu_N ONG.SG 0.351
  242. gendstat: Russia_Shamanka_Eneolithic.SG WSHG 0.807
  243. gendstat: Russia_Shamanka_Eneolithic.SG Turkey_N 0.381
  244. gendstat: Russia_Shamanka_Eneolithic.SG PPN 0.267
  245. gendstat: Russia_Shamanka_Eneolithic.SG Serbia_IronGates_Mesolithic 0.317
  246. gendstat: Russia_Shamanka_Eneolithic.SG Iran_GanjDareh_N 0.229
  247. gendstat: Russia_Shamanka_Eneolithic.SG ONG.SG 1.662
  248. gendstat: WSHG Turkey_N -0.547
  249. gendstat: WSHG PPN -0.424
  250. gendstat: WSHG Serbia_IronGates_Mesolithic -0.608
  251. gendstat: WSHG Iran_GanjDareh_N -0.555
  252. gendstat: WSHG ONG.SG 0.469
  253. gendstat: Turkey_N PPN -0.026
  254. gendstat: Turkey_N Serbia_IronGates_Mesolithic -0.072
  255. gendstat: Turkey_N Iran_GanjDareh_N -0.121
  256. gendstat: Turkey_N ONG.SG 1.073
  257. gendstat: PPN Serbia_IronGates_Mesolithic -0.026
  258. gendstat: PPN Iran_GanjDareh_N -0.071
  259. gendstat: PPN ONG.SG 0.897
  260. gendstat: Serbia_IronGates_Mesolithic Iran_GanjDareh_N -0.054
  261. gendstat: Serbia_IronGates_Mesolithic ONG.SG 1.102
  262. gendstat: Iran_GanjDareh_N ONG.SG 1.106
  263.  
  264. removing /tmp/fsx.28213
  265. ##end of qpAdm: 24.301 seconds cpu 0.582 Mbytes in use
  266.  
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