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make all error log anoop

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Oct 17th, 2019
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  1. anoop@thinkpad:~/software/WindGen$ make all
  2. cd src; make
  3. make[1]: Entering directory '/home/anoop/software/WindGen/src'
  4. gcc  -O2 -ffast-math -freciprocal-math -I /home/anoop/software/WindGen/src -I /home/anoop/software/WindGen/fftw-3.3.3/include -DHAVE_HDF5 -I /usr/lib/x86_64-linux-gnu/hdf5/serial/include   -c -o wfs.o wfs.c
  5. gcc  -O2 -ffast-math -freciprocal-math -I /home/anoop/software/WindGen/src -I /home/anoop/software/WindGen/fftw-3.3.3/include -DHAVE_HDF5 -I /usr/lib/x86_64-linux-gnu/hdf5/serial/include   -c -o input.o input.c
  6. gcc  -O2 -ffast-math -freciprocal-math -I /home/anoop/software/WindGen/src -I /home/anoop/software/WindGen/fftw-3.3.3/include -DHAVE_HDF5 -I /usr/lib/x86_64-linux-gnu/hdf5/serial/include   -c -o dft.o dft.c
  7. gcc  -O2 -ffast-math -freciprocal-math -I /home/anoop/software/WindGen/src -I /home/anoop/software/WindGen/fftw-3.3.3/include -DHAVE_HDF5 -I /usr/lib/x86_64-linux-gnu/hdf5/serial/include   -c -o rv.o rv.c
  8. gcc  -O2 -ffast-math -freciprocal-math -I /home/anoop/software/WindGen/src -I /home/anoop/software/WindGen/fftw-3.3.3/include -DHAVE_HDF5 -I /usr/lib/x86_64-linux-gnu/hdf5/serial/include   -c -o herm.o herm.c
  9. gcc  -O2 -ffast-math -freciprocal-math -I /home/anoop/software/WindGen/src -I /home/anoop/software/WindGen/fftw-3.3.3/include -DHAVE_HDF5 -I /usr/lib/x86_64-linux-gnu/hdf5/serial/include   -c -o conv.o conv.c
  10. gcc  -O2 -ffast-math -freciprocal-math -I /home/anoop/software/WindGen/src -I /home/anoop/software/WindGen/fftw-3.3.3/include -DHAVE_HDF5 -I /usr/lib/x86_64-linux-gnu/hdf5/serial/include   -c -o range.o range.c
  11. rm -f libwfs.a
  12. ar rcs libwfs.a wfs.o input.o dft.o rv.o herm.o conv.o range.o
  13. make[1]: Leaving directory '/home/anoop/software/WindGen/src'
  14. cd test; make
  15. make[1]: Entering directory '/home/anoop/software/WindGen/test'
  16. cd rv; make
  17. make[2]: Entering directory '/home/anoop/software/WindGen/test/rv'
  18. gcc  -o rv rv.c -O2 -ffast-math -freciprocal-math -I /home/anoop/software/WindGen/src -I /home/anoop/software/WindGen/fftw-3.3.3/include -DHAVE_HDF5 -I /usr/lib/x86_64-linux-gnu/hdf5/serial/include -L /home/anoop/software/WindGen/src -L /home/anoop/software/WindGen/fftw-3.3.3/lib -lwfs -lfftw3 /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a /usr/lib/x86_64-linux-gnu/libz.a /usr/lib/x86_64-linux-gnu/libsz.a -lm
  19. make[2]: Leaving directory '/home/anoop/software/WindGen/test/rv'
  20. cd herm2d; make
  21. make[2]: Entering directory '/home/anoop/software/WindGen/test/herm2d'
  22. gcc  -o herm2d herm2d.c -O2 -ffast-math -freciprocal-math -I /home/anoop/software/WindGen/src -I /home/anoop/software/WindGen/fftw-3.3.3/include -DHAVE_HDF5 -I /usr/lib/x86_64-linux-gnu/hdf5/serial/include -L /home/anoop/software/WindGen/src -L /home/anoop/software/WindGen/fftw-3.3.3/lib -lwfs -lfftw3 /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a /usr/lib/x86_64-linux-gnu/libz.a /usr/lib/x86_64-linux-gnu/libsz.a -lm
  23. make[2]: Leaving directory '/home/anoop/software/WindGen/test/herm2d'
  24. cd herm3d; make
  25. make[2]: Entering directory '/home/anoop/software/WindGen/test/herm3d'
  26. gcc  -o herm3d herm3d.c -O2 -ffast-math -freciprocal-math -I /home/anoop/software/WindGen/src -I /home/anoop/software/WindGen/fftw-3.3.3/include -DHAVE_HDF5 -I /usr/lib/x86_64-linux-gnu/hdf5/serial/include -L /home/anoop/software/WindGen/src -L /home/anoop/software/WindGen/fftw-3.3.3/lib -lwfs -lfftw3 /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a /usr/lib/x86_64-linux-gnu/libz.a /usr/lib/x86_64-linux-gnu/libsz.a -lm
  27. make[2]: Leaving directory '/home/anoop/software/WindGen/test/herm3d'
  28. cd input; make
  29. make[2]: Entering directory '/home/anoop/software/WindGen/test/input'
  30. gcc  -o input input.c -O2 -ffast-math -freciprocal-math -I /home/anoop/software/WindGen/src -I /home/anoop/software/WindGen/fftw-3.3.3/include -DHAVE_HDF5 -I /usr/lib/x86_64-linux-gnu/hdf5/serial/include -L /home/anoop/software/WindGen/src -L /home/anoop/software/WindGen/fftw-3.3.3/lib -lwfs -lfftw3 /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a /usr/lib/x86_64-linux-gnu/libz.a /usr/lib/x86_64-linux-gnu/libsz.a -lm
  31. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5O.o): In function `H5Olink':
  32. (.text+0x21a): undefined reference to `pthread_once'
  33. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5O.o): In function `H5Oexists_by_name':
  34. (.text+0x56e): undefined reference to `pthread_once'
  35. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5O.o): In function `H5Oget_info':
  36. (.text+0x7bd): undefined reference to `pthread_once'
  37. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5O.o): In function `H5Oget_info_by_name':
  38. (.text+0x9b3): undefined reference to `pthread_once'
  39. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5O.o): In function `H5Oset_comment':
  40. (.text+0xc2d): undefined reference to `pthread_once'
  41. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5O.o):(.text+0xdf3): more undefined references to `pthread_once' follow
  42. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5E.o): In function `H5Eprint2':
  43. (.text+0x809e): undefined reference to `pthread_getspecific'
  44. (.text+0x811b): undefined reference to `pthread_setspecific'
  45. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5E.o): In function `H5E_get_stack':
  46. (.text+0x890e): undefined reference to `pthread_getspecific'
  47. (.text+0x8996): undefined reference to `pthread_setspecific'
  48. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5E.o): In function `H5Eregister_class':
  49. (.text+0x89cc): undefined reference to `pthread_once'
  50. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5E.o): In function `H5Eunregister_class':
  51. (.text+0x8bf3): undefined reference to `pthread_once'
  52. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5E.o): In function `H5Eget_class_name':
  53. (.text+0x8dc2): undefined reference to `pthread_once'
  54. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5E.o): In function `H5Eclose_msg':
  55. (.text+0x8fc3): undefined reference to `pthread_once'
  56. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5E.o): In function `H5Ecreate_msg':
  57. (.text+0x9191): undefined reference to `pthread_once'
  58. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5E.o):(.text+0x9515): more undefined references to `pthread_once' follow
  59. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5E.o): In function `H5Eget_current_stack':
  60. (.text+0x99ad): undefined reference to `pthread_getspecific'
  61. (.text+0x9c97): undefined reference to `pthread_setspecific'
  62. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5E.o): In function `H5Eset_current_stack':
  63. (.text+0x9e5a): undefined reference to `pthread_once'
  64. (.text+0x9f46): undefined reference to `pthread_getspecific'
  65. (.text+0xa180): undefined reference to `pthread_setspecific'
  66. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5E.o): In function `H5Eclose_stack':
  67. (.text+0xa313): undefined reference to `pthread_once'
  68. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5E.o): In function `H5Eget_num':
  69. (.text+0xa4e3): undefined reference to `pthread_once'
  70. (.text+0xa62e): undefined reference to `pthread_getspecific'
  71. (.text+0xa6ab): undefined reference to `pthread_setspecific'
  72. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5E.o): In function `H5Epop':
  73. (.text+0xa7ab): undefined reference to `pthread_once'
  74. (.text+0xa91e): undefined reference to `pthread_getspecific'
  75. (.text+0xa99b): undefined reference to `pthread_setspecific'
  76. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5E.o): In function `H5Epush2':
  77. (.text+0xab16): undefined reference to `pthread_once'
  78. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5E.o): In function `H5Eclear2':
  79. (.text+0xadf3): undefined reference to `pthread_once'
  80. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5E.o): In function `H5Ewalk2':
  81. (.text+0xaff4): undefined reference to `pthread_once'
  82. (.text+0xb18e): undefined reference to `pthread_getspecific'
  83. (.text+0xb20b): undefined reference to `pthread_setspecific'
  84. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5E.o): In function `H5Eget_auto2':
  85. (.text+0xb320): undefined reference to `pthread_once'
  86. (.text+0xb46d): undefined reference to `pthread_getspecific'
  87. (.text+0xb4ea): undefined reference to `pthread_setspecific'
  88. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5E.o): In function `H5Eset_auto2':
  89. (.text+0xb662): undefined reference to `pthread_once'
  90. (.text+0xb816): undefined reference to `pthread_getspecific'
  91. (.text+0xb893): undefined reference to `pthread_setspecific'
  92. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5E.o): In function `H5Eauto_is_v2':
  93. (.text+0xb9b9): undefined reference to `pthread_once'
  94. (.text+0xbac5): undefined reference to `pthread_getspecific'
  95. (.text+0xbb42): undefined reference to `pthread_setspecific'
  96. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5Edeprec.o): In function `H5Eget_major':
  97. (.text+0x2a): undefined reference to `pthread_once'
  98. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5Edeprec.o): In function `H5Eget_minor':
  99. (.text+0x2aa): undefined reference to `pthread_once'
  100. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5Edeprec.o): In function `H5Epush1':
  101. (.text+0x52f): undefined reference to `pthread_once'
  102. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5Edeprec.o): In function `H5Eclear1':
  103. (.text+0x670): undefined reference to `pthread_once'
  104. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5Edeprec.o): In function `H5Eprint1':
  105. (.text+0x793): undefined reference to `pthread_once'
  106. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5Edeprec.o):(.text+0x90f): more undefined references to `pthread_once' follow
  107. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5PL.o): In function `H5PL_term_package':
  108. (.text+0xb9): undefined reference to `dlclose'
  109. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5PL.o): In function `H5PLset_loading_state':
  110. (.text+0x192): undefined reference to `pthread_once'
  111. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5PL.o): In function `H5PLget_loading_state':
  112. (.text+0x2e8): undefined reference to `pthread_once'
  113. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5PL.o): In function `H5PL_load':
  114. (.text+0x68a): undefined reference to `dlsym'
  115. (.text+0x86e): undefined reference to `dlopen'
  116. (.text+0x889): undefined reference to `dlsym'
  117. (.text+0x8c0): undefined reference to `dlclose'
  118. (.text+0x961): undefined reference to `dlerror'
  119. (.text+0xd4e): undefined reference to `dlclose'
  120. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5R.o): In function `H5Rcreate':
  121. (.text+0x1d1): undefined reference to `pthread_once'
  122. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5R.o): In function `H5Rdereference2':
  123. (.text+0xc60): undefined reference to `pthread_once'
  124. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5R.o): In function `H5Rget_region':
  125. (.text+0xf44): undefined reference to `pthread_once'
  126. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5R.o): In function `H5Rget_obj_type2':
  127. (.text+0x15c8): undefined reference to `pthread_once'
  128. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5R.o): In function `H5Rget_name':
  129. (.text+0x19ae): undefined reference to `pthread_once'
  130. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5S.o):(.text+0x677): more undefined references to `pthread_once' follow
  131. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5TS.o): In function `H5TS_pthread_first_thread_init':
  132. (.text+0x67): undefined reference to `pthread_key_create'
  133. (.text+0x7a): undefined reference to `pthread_key_create'
  134. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5TS.o): In function `H5TS_cancel_count_inc':
  135. (.text+0x198): undefined reference to `pthread_getspecific'
  136. (.text+0x1f1): undefined reference to `pthread_setspecific'
  137. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5TS.o): In function `H5TS_cancel_count_dec':
  138. (.text+0x248): undefined reference to `pthread_getspecific'
  139. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5TS.o): In function `H5TS_create_thread':
  140. (.text+0x2a1): undefined reference to `pthread_create'
  141. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5TS.o): In function `H5TS_pthread_first_thread_init':
  142. (.text+0x91): undefined reference to `pthread_key_create'
  143. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5Z.o): In function `H5Zregister':
  144. (.text+0x987): undefined reference to `pthread_once'
  145. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5Z.o): In function `H5Zunregister':
  146. (.text+0x1782): undefined reference to `pthread_once'
  147. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5Z.o): In function `H5Zfilter_avail':
  148. (.text+0x1962): undefined reference to `pthread_once'
  149. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5Z.o): In function `H5Zget_filter_info':
  150. (.text+0x390a): undefined reference to `pthread_once'
  151. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5Dfill.o): In function `H5Dfill':
  152. (.text+0xab6): undefined reference to `pthread_once'
  153. /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.a(H5FDsec2.o):(.text+0xeb8): more undefined references to `pthread_once' follow
  154. /usr/lib/x86_64-linux-gnu/libsz.a(sz_compat.o): In function `SZ_BufftoBuffCompress':
  155. (.text+0x149): undefined reference to `aec_buffer_encode'
  156. (.text+0x339): undefined reference to `aec_buffer_encode'
  157. /usr/lib/x86_64-linux-gnu/libsz.a(sz_compat.o): In function `SZ_BufftoBuffDecompress':
  158. (.text+0x51a): undefined reference to `aec_buffer_decode'
  159. (.text+0x618): undefined reference to `aec_buffer_decode'
  160. collect2: error: ld returned 1 exit status
  161. Makefile:6: recipe for target 'input' failed
  162. make[2]: *** [input] Error 1
  163. make[2]: Leaving directory '/home/anoop/software/WindGen/test/input'
  164. Makefile:4: recipe for target 'all' failed
  165. make[1]: *** [all] Error 2
  166. make[1]: Leaving directory '/home/anoop/software/WindGen/test'
  167. Makefile:4: recipe for target 'all' failed
  168. make: *** [all] Error 2
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