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misnomer001

SPGT - armmba Oy-dzhaylau fail

misnomer001
Jan 9th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 810
  3. seed: 1945277988
  4.  
  5. left pops:
  6. SPGT
  7. InPe
  8. Armenia_MBA.SG
  9. Oy_Dzhaylau_MLBA
  10.  
  11. right pops:
  12. Kazakhstan_Botai.SG
  13. Ganj_Dareh_N
  14. PPN
  15. Anatolia_N
  16. Iberia_MN
  17. Russia_MA1.SG
  18. Georgia_Satsurblia.SG
  19. Kostenki14.SG
  20. Russia_Karelia_HG
  21. Serbia_Iron_Gates_HG
  22. Tyumen_HG
  23. Onge.DG
  24. Russia_Shamanka_EN.SG
  25.  
  26. 0 SPGT 85
  27. 1 InPe 10
  28. 2 Armenia_MBA.SG 4
  29. 3 Oy_Dzhaylau_MLBA 6
  30. 4 Kazakhstan_Botai.SG 3
  31. 5 Ganj_Dareh_N 7
  32. 6 PPN 8
  33. 7 Anatolia_N 22
  34. 8 Iberia_MN 4
  35. 9 Russia_MA1.SG 1
  36. 10 Georgia_Satsurblia.SG 1
  37. 11 Kostenki14.SG 1
  38. 12 Russia_Karelia_HG 2
  39. 13 Serbia_Iron_Gates_HG 32
  40. 14 Tyumen_HG 2
  41. 15 Onge.DG 2
  42. 16 Russia_Shamanka_EN.SG 10
  43. jackknife block size: 0.050
  44. snps: 1150476 indivs: 200
  45. number of blocks for block jackknife: 552
  46. ## ncols: 1150476
  47. coverage: SPGT 1134632
  48. coverage: InPe 878190
  49. coverage: Armenia_MBA.SG 919421
  50. coverage: Oy_Dzhaylau_MLBA 999558
  51. coverage: Kazakhstan_Botai.SG 1149870
  52. coverage: Ganj_Dareh_N 1029695
  53. coverage: PPN 835499
  54. coverage: Anatolia_N 1134099
  55. coverage: Iberia_MN 967760
  56. coverage: Russia_MA1.SG 805960
  57. coverage: Georgia_Satsurblia.SG 801311
  58. coverage: Kostenki14.SG 1048972
  59. coverage: Russia_Karelia_HG 1010733
  60. coverage: Serbia_Iron_Gates_HG 1139259
  61. coverage: Tyumen_HG 807474
  62. coverage: Onge.DG 1120748
  63. coverage: Russia_Shamanka_EN.SG 1149998
  64. dof (jackknife): 467.925
  65. numsnps used: 1150476
  66. codimension 1
  67. f4info:
  68. f4rank: 2 dof: 10 chisq: 32.582 tail: 0.000320137913 dofdiff: 12 chisqdiff: -32.582 taildiff: 1
  69. B:
  70. scale 1.000 1.000
  71. Ganj_Dareh_N 1.347 1.437
  72. PPN -0.647 1.607
  73. Anatolia_N -0.808 1.545
  74. Iberia_MN -0.959 1.173
  75. Russia_MA1.SG 0.139 0.083
  76. Georgia_Satsurblia.SG 0.328 1.514
  77. Kostenki14.SG 0.244 0.595
  78. Russia_Karelia_HG -0.905 -0.064
  79. Serbia_Iron_Gates_HG -1.439 0.088
  80. Tyumen_HG -0.018 -0.227
  81. Onge.DG 1.767 0.796
  82. Russia_Shamanka_EN.SG 1.412 0.489
  83. A:
  84. scale 600.670 935.551
  85. InPe 0.342 0.156
  86. Armenia_MBA.SG -1.007 1.477
  87. Oy_Dzhaylau_MLBA -1.367 -0.892
  88.  
  89.  
  90. full rank
  91. f4info:
  92. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 32.582 taildiff: 0.000320137913
  93. B:
  94. scale 1.000 1.000 1.000
  95. Ganj_Dareh_N 1.366 1.456 0.158
  96. PPN -0.639 1.604 -0.620
  97. Anatolia_N -0.818 1.535 -1.257
  98. Iberia_MN -0.973 1.148 -0.294
  99. Russia_MA1.SG 0.152 0.111 1.452
  100. Georgia_Satsurblia.SG 0.312 1.519 -1.225
  101. Kostenki14.SG 0.236 0.638 0.487
  102. Russia_Karelia_HG -0.922 -0.023 1.401
  103. Serbia_Iron_Gates_HG -1.447 0.078 1.369
  104. Tyumen_HG -0.017 -0.234 1.257
  105. Onge.DG 1.751 0.790 0.724
  106. Russia_Shamanka_EN.SG 1.387 0.467 -0.370
  107. A:
  108. scale 601.162 902.865 5564.946
  109. InPe 0.333 0.495 1.636
  110. Armenia_MBA.SG -1.012 1.485 0.174
  111. Oy_Dzhaylau_MLBA -1.366 -0.742 0.542
  112.  
  113.  
  114. best coefficients: 0.795 0.025 0.180
  115. Jackknife mean: 0.794829796 0.024270797 0.180899407
  116. std. errors: 0.016 0.028 0.021
  117.  
  118. error covariance (* 1000000)
  119. 244 -303 59
  120. -303 809 -507
  121. 59 -507 448
  122.  
  123.  
  124. summ: SPGT 3 0.000320 0.795 0.024 0.181 244 -303 59 809 -507 448
  125.  
  126. fixed pat wt dof chisq tail prob
  127. 000 0 10 32.582 0.000320138 0.795 0.025 0.180
  128. 001 1 11 105.115 1.724e-17 0.771 0.229 -0.000
  129. 010 1 11 32.821 0.000562393 0.804 0.000 0.196
  130. 100 1 11 341.488 0 0.000 2.541 -1.541 infeasible
  131. 011 2 12 237.827 0 1.000 0.000 -0.000
  132. 101 2 12 688.490 0 0.000 1.000 -0.000
  133. 110 2 12 1972.537 0 0.000 0.000 1.000
  134. best pat: 000 0.000320138 - -
  135. best pat: 010 0.000562393 chi(nested): 0.240 p-value for nested model: 0.624541
  136. best pat: 011 4.69848e-44 chi(nested): 205.006 p-value for nested model: 1.68858e-46
  137.  
  138. coeffs: 0.795 0.025 0.180
  139.  
  140. ## dscore:: f_4(Base, Fit, Rbase, right2)
  141. ## genstat:: f_4(Base, Fit, right1, right2)
  142.  
  143. details: InPe Ganj_Dareh_N 0.001603 8.945534
  144. details: Armenia_MBA.SG Ganj_Dareh_N 0.000127 0.456748
  145. details: Oy_Dzhaylau_MLBA Ganj_Dareh_N -0.004292 -19.990181
  146. dscore: Ganj_Dareh_N f4: 0.000503 Z: 3.408309
  147.  
  148. details: InPe PPN 0.000330 1.677312
  149. details: Armenia_MBA.SG PPN 0.003751 12.177826
  150. details: Oy_Dzhaylau_MLBA PPN 0.000075 0.318265
  151. dscore: PPN f4: 0.000369 Z: 2.341634
  152.  
  153. details: InPe Anatolia_N 0.000043 0.284317
  154. details: Armenia_MBA.SG Anatolia_N 0.003907 15.177234
  155. details: Oy_Dzhaylau_MLBA Anatolia_N 0.000491 2.343308
  156. dscore: Anatolia_N f4: 0.000220 Z: 1.721154
  157.  
  158. details: InPe Iberia_MN 0.000013 0.081287
  159. details: Armenia_MBA.SG Iberia_MN 0.003576 12.642637
  160. details: Oy_Dzhaylau_MLBA Iberia_MN 0.001252 5.392001
  161. dscore: Iberia_MN f4: 0.000325 Z: 2.367333
  162.  
  163. details: InPe Russia_MA1.SG 0.000629 3.196653
  164. details: Armenia_MBA.SG Russia_MA1.SG -0.000030 -0.105266
  165. details: Oy_Dzhaylau_MLBA Russia_MA1.SG -0.000295 -1.318298
  166. dscore: Russia_MA1.SG f4: 0.000446 Z: 2.775072
  167.  
  168. details: InPe Georgia_Satsurblia.SG 0.000622 2.808470
  169. details: Armenia_MBA.SG Georgia_Satsurblia.SG 0.001997 6.137704
  170. details: Oy_Dzhaylau_MLBA Georgia_Satsurblia.SG -0.002099 -8.340666
  171. dscore: Georgia_Satsurblia.SG f4: 0.000165 Z: 0.906537
  172.  
  173. details: InPe Kostenki14.SG 0.000649 3.107648
  174. details: Armenia_MBA.SG Kostenki14.SG 0.000702 2.291010
  175. details: Oy_Dzhaylau_MLBA Kostenki14.SG -0.001019 -4.025497
  176. dscore: Kostenki14.SG f4: 0.000349 Z: 2.023815
  177.  
  178. details: InPe Russia_Karelia_HG -0.000076 -0.424306
  179. details: Armenia_MBA.SG Russia_Karelia_HG 0.001590 5.893769
  180. details: Oy_Dzhaylau_MLBA Russia_Karelia_HG 0.002286 10.405548
  181. dscore: Russia_Karelia_HG f4: 0.000391 Z: 2.627705
  182.  
  183. details: InPe Serbia_Iron_Gates_HG -0.000351 -2.443639
  184. details: Armenia_MBA.SG Serbia_Iron_Gates_HG 0.002657 11.436167
  185. details: Oy_Dzhaylau_MLBA Serbia_Iron_Gates_HG 0.003362 16.783250
  186. dscore: Serbia_Iron_Gates_HG f4: 0.000393 Z: 3.347804
  187.  
  188. details: InPe Tyumen_HG 0.000271 1.467695
  189. details: Armenia_MBA.SG Tyumen_HG -0.000309 -1.201247
  190. details: Oy_Dzhaylau_MLBA Tyumen_HG 0.000363 1.735655
  191. dscore: Tyumen_HG f4: 0.000273 Z: 1.794490
  192.  
  193. details: InPe Onge.DG 0.001632 9.091050
  194. details: Armenia_MBA.SG Onge.DG -0.001606 -5.692863
  195. details: Oy_Dzhaylau_MLBA Onge.DG -0.004551 -19.546582
  196. dscore: Onge.DG f4: 0.000436 Z: 2.930976
  197.  
  198. details: InPe Russia_Shamanka_EN.SG 0.000932 6.166860
  199. details: Armenia_MBA.SG Russia_Shamanka_EN.SG -0.001541 -6.744547
  200. details: Oy_Dzhaylau_MLBA Russia_Shamanka_EN.SG -0.003569 -19.048123
  201. dscore: Russia_Shamanka_EN.SG f4: 0.000059 Z: 0.474693
  202.  
  203. gendstat: Kazakhstan_Botai.SG Ganj_Dareh_N 3.408
  204. gendstat: Kazakhstan_Botai.SG PPN 2.342
  205. gendstat: Kazakhstan_Botai.SG Anatolia_N 1.721
  206. gendstat: Kazakhstan_Botai.SG Iberia_MN 2.367
  207. gendstat: Kazakhstan_Botai.SG Russia_MA1.SG 2.775
  208. gendstat: Kazakhstan_Botai.SG Georgia_Satsurblia.SG 0.907
  209. gendstat: Kazakhstan_Botai.SG Kostenki14.SG 2.024
  210. gendstat: Kazakhstan_Botai.SG Russia_Karelia_HG 2.628
  211. gendstat: Kazakhstan_Botai.SG Serbia_Iron_Gates_HG 3.348
  212. gendstat: Kazakhstan_Botai.SG Tyumen_HG 1.794
  213. gendstat: Kazakhstan_Botai.SG Onge.DG 2.931
  214. gendstat: Kazakhstan_Botai.SG Russia_Shamanka_EN.SG 0.475
  215. gendstat: Ganj_Dareh_N PPN -0.860
  216. gendstat: Ganj_Dareh_N Anatolia_N -2.293
  217. gendstat: Ganj_Dareh_N Iberia_MN -1.256
  218. gendstat: Ganj_Dareh_N Russia_MA1.SG -0.301
  219. gendstat: Ganj_Dareh_N Georgia_Satsurblia.SG -1.915
  220. gendstat: Ganj_Dareh_N Kostenki14.SG -0.848
  221. gendstat: Ganj_Dareh_N Russia_Karelia_HG -0.638
  222. gendstat: Ganj_Dareh_N Serbia_Iron_Gates_HG -0.790
  223. gendstat: Ganj_Dareh_N Tyumen_HG -1.201
  224. gendstat: Ganj_Dareh_N Onge.DG -0.413
  225. gendstat: Ganj_Dareh_N Russia_Shamanka_EN.SG -2.970
  226. gendstat: PPN Anatolia_N -1.229
  227. gendstat: PPN Iberia_MN -0.310
  228. gendstat: PPN Russia_MA1.SG 0.382
  229. gendstat: PPN Georgia_Satsurblia.SG -1.056
  230. gendstat: PPN Kostenki14.SG -0.105
  231. gendstat: PPN Russia_Karelia_HG 0.128
  232. gendstat: PPN Serbia_Iron_Gates_HG 0.178
  233. gendstat: PPN Tyumen_HG -0.462
  234. gendstat: PPN Onge.DG 0.386
  235. gendstat: PPN Russia_Shamanka_EN.SG -1.963
  236. gendstat: Anatolia_N Iberia_MN 1.054
  237. gendstat: Anatolia_N Russia_MA1.SG 1.313
  238. gendstat: Anatolia_N Georgia_Satsurblia.SG -0.330
  239. gendstat: Anatolia_N Kostenki14.SG 0.811
  240. gendstat: Anatolia_N Russia_Karelia_HG 1.136
  241. gendstat: Anatolia_N Serbia_Iron_Gates_HG 1.787
  242. gendstat: Anatolia_N Tyumen_HG 0.293
  243. gendstat: Anatolia_N Onge.DG 1.488
  244. gendstat: Anatolia_N Russia_Shamanka_EN.SG -1.321
  245. gendstat: Iberia_MN Russia_MA1.SG 0.676
  246. gendstat: Iberia_MN Georgia_Satsurblia.SG -0.854
  247. gendstat: Iberia_MN Kostenki14.SG 0.137
  248. gendstat: Iberia_MN Russia_Karelia_HG 0.411
  249. gendstat: Iberia_MN Serbia_Iron_Gates_HG 0.616
  250. gendstat: Iberia_MN Tyumen_HG -0.271
  251. gendstat: Iberia_MN Onge.DG 0.689
  252. gendstat: Iberia_MN Russia_Shamanka_EN.SG -1.874
  253. gendstat: Russia_MA1.SG Georgia_Satsurblia.SG -1.297
  254. gendstat: Russia_MA1.SG Kostenki14.SG -0.479
  255. gendstat: Russia_MA1.SG Russia_Karelia_HG -0.281
  256. gendstat: Russia_MA1.SG Serbia_Iron_Gates_HG -0.322
  257. gendstat: Russia_MA1.SG Tyumen_HG -0.849
  258. gendstat: Russia_MA1.SG Onge.DG -0.052
  259. gendstat: Russia_MA1.SG Russia_Shamanka_EN.SG -2.181
  260. gendstat: Georgia_Satsurblia.SG Kostenki14.SG 0.888
  261. gendstat: Georgia_Satsurblia.SG Russia_Karelia_HG 1.105
  262. gendstat: Georgia_Satsurblia.SG Serbia_Iron_Gates_HG 1.287
  263. gendstat: Georgia_Satsurblia.SG Tyumen_HG 0.506
  264. gendstat: Georgia_Satsurblia.SG Onge.DG 1.375
  265. gendstat: Georgia_Satsurblia.SG Russia_Shamanka_EN.SG -0.583
  266. gendstat: Kostenki14.SG Russia_Karelia_HG 0.220
  267. gendstat: Kostenki14.SG Serbia_Iron_Gates_HG 0.277
  268. gendstat: Kostenki14.SG Tyumen_HG -0.352
  269. gendstat: Kostenki14.SG Onge.DG 0.451
  270. gendstat: Kostenki14.SG Russia_Shamanka_EN.SG -1.628
  271. gendstat: Russia_Karelia_HG Serbia_Iron_Gates_HG 0.015
  272. gendstat: Russia_Karelia_HG Tyumen_HG -0.617
  273. gendstat: Russia_Karelia_HG Onge.DG 0.252
  274. gendstat: Russia_Karelia_HG Russia_Shamanka_EN.SG -2.014
  275. gendstat: Serbia_Iron_Gates_HG Tyumen_HG -0.699
  276. gendstat: Serbia_Iron_Gates_HG Onge.DG 0.286
  277. gendstat: Serbia_Iron_Gates_HG Russia_Shamanka_EN.SG -2.642
  278. gendstat: Tyumen_HG Onge.DG 0.840
  279. gendstat: Tyumen_HG Russia_Shamanka_EN.SG -1.213
  280. gendstat: Onge.DG Russia_Shamanka_EN.SG -2.959
  281.  
  282. ## end of run
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