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  1. == 2019-05-09 15:25:07,653 easyblock.py:279 INFO This is EasyBuild 3.9.1.dev0 (framework: 3.9.1.dev0, easyblocks: 3.9.1.dev0) on host nic72.
  2. == 2019-05-09 15:25:07,653 easyblock.py:285 INFO This is easyblock Tarball from module easybuild.easyblocks.generic.tarball (/dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/easybuild-easyblocks/easybuild/easyblocks/generic/tarball.py)
  3. == 2019-05-09 15:25:07,653 easyblock.py:840 INFO Build dir set to /dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/Trim_Galore/0.6.0/foss-2018b-Python-2.7.15
  4. == 2019-05-09 15:25:07,653 easyblock.py:900 INFO Software install dir set to /dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/software/Trim_Galore/0.6.0-foss-2018b-Python-2.7.15
  5. == 2019-05-09 15:25:07,653 easyblock.py:905 INFO Module install dir set to /dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/modules/all
  6. == 2019-05-09 15:25:07,654 easyblock.py:264 INFO Init completed for application name Trim_Galore version 0.6.0
  7. == 2019-05-09 15:25:07,654 easyblock.py:2999 INFO Obtained application instance of for Trim_Galore (easyblock: Tarball)
  8. == 2019-05-09 15:25:07,654 one.py:146 INFO Skipping reformatting value for parameter 'toolchain'
  9. == 2019-05-09 15:25:07,655 filetools.py:1207 INFO Creating directory /dev/shm/vsc10042/2090320/eb-qF5pjw/reprod_20190509152507_1961 (parents: True, set_gid: False, sticky: False)
  10. == 2019-05-09 15:25:07,655 easyblock.py:3169 INFO Dumped easyconfig instance to /dev/shm/vsc10042/2090320/eb-qF5pjw/reprod_20190509152507_1961/Trim_Galore-0.6.0-foss-2018b-Python-2.7.15.eb
  11. == 2019-05-09 15:25:07,657 filetools.py:1207 INFO Creating directory /dev/shm/vsc10042/2090320/eb-qF5pjw/reprod_20190509152507_1961/easyblocks (parents: True, set_gid: False, sticky: False)
  12. == 2019-05-09 15:25:07,657 filetools.py:1677 INFO /dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/easybuild-easyblocks/easybuild/easyblocks/generic/tarball.py copied to /dev/shm/vsc10042/2090320/eb-qF5pjw/reprod_20190509152507_1961/easyblocks/tarball.py
  13. == 2019-05-09 15:25:07,657 easyblock.py:3184 INFO Dumped easyblock tarball.py required for reproduction to /dev/shm/vsc10042/2090320/eb-qF5pjw/reprod_20190509152507_1961/easyblocks
  14. == 2019-05-09 15:25:07,657 easyblock.py:1599 INFO Number of iterations to perform for central part of installation procedure: 1
  15. == 2019-05-09 15:25:07,657 build_log.py:252 INFO building and installing Trim_Galore/0.6.0-foss-2018b-Python-2.7.15...
  16. == 2019-05-09 15:25:07,657 build_log.py:252 INFO fetching files...
  17. == 2019-05-09 15:25:07,657 easyblock.py:2779 INFO Starting fetch step
  18. == 2019-05-09 15:25:07,658 easyblock.py:2785 INFO Running method fetch_step part of step fetch
  19. == 2019-05-09 15:25:07,658 easyblock.py:1680 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
  20. == 2019-05-09 15:25:07,658 filetools.py:394 INFO Command eb found at /dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/easybuild-framework/eb
  21. == 2019-05-09 15:25:07,673 easyblock.py:668 INFO Found file 0.6.0.tar.gz at /apps/gent/source/t/Trim_Galore/0.6.0.tar.gz
  22. == 2019-05-09 15:25:07,677 easyblock.py:393 INFO Added sources: [{'path': '/apps/gent/source/t/Trim_Galore/0.6.0.tar.gz', 'cmd': None, 'finalpath': '/dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/Trim_Galore/0.6.0/foss-2018b-Python-2.7.15', 'name': '0.6.0.tar.gz', 'checksum': 'f374dfa4c94e2ad50c63276dda0f341fd95b29cb1d5a0e2ad56e8b0168b758ec'}]
  23. == 2019-05-09 15:25:07,678 easyblock.py:1721 INFO no patches provided
  24. == 2019-05-09 15:25:08,138 easyblock.py:1731 INFO md5 checksum for /apps/gent/source/t/Trim_Galore/0.6.0.tar.gz: 7dfa3eca2b1adbce51e4fd24bbc44b47
  25. == 2019-05-09 15:25:08,242 easyblock.py:1731 INFO sha256 checksum for /apps/gent/source/t/Trim_Galore/0.6.0.tar.gz: f374dfa4c94e2ad50c63276dda0f341fd95b29cb1d5a0e2ad56e8b0168b758ec
  26. == 2019-05-09 15:25:08,242 easyblock.py:1766 INFO Checking dirs that need to be created: ['/dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/software/Trim_Galore/0.6.0-foss-2018b-Python-2.7.15', '/dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/modules/all/Trim_Galore', '/dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/modules/bio/Trim_Galore']
  27. == 2019-05-09 15:25:08,243 filetools.py:1207 INFO Creating directory /dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/software/Trim_Galore/0.6.0-foss-2018b-Python-2.7.15 (parents: True, set_gid: False, sticky: False)
  28. == 2019-05-09 15:25:08,243 filetools.py:1207 INFO Creating directory /dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/modules/all/Trim_Galore (parents: True, set_gid: False, sticky: False)
  29. == 2019-05-09 15:25:08,243 filetools.py:1207 INFO Creating directory /dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/modules/bio/Trim_Galore (parents: True, set_gid: False, sticky: False)
  30. == 2019-05-09 15:25:08,243 build_log.py:252 INFO creating build dir, resetting environment...
  31. == 2019-05-09 15:25:08,243 easyblock.py:2779 INFO Starting ready step
  32. == 2019-05-09 15:25:08,243 easyblock.py:2785 INFO Running method check_readiness_step part of step ready
  33. == 2019-05-09 15:25:08,245 easyblock.py:1618 INFO Setting parallelism: 4
  34. == 2019-05-09 15:25:08,301 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
  35. == 2019-05-09 15:25:08,302 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
  36. == 2019-05-09 15:25:08,302 easyblock.py:2785 INFO Running method make_builddir part of step ready
  37. == 2019-05-09 15:25:08,302 filetools.py:1207 INFO Creating directory /dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/Trim_Galore/0.6.0/foss-2018b-Python-2.7.15 (parents: True, set_gid: False, sticky: False)
  38. == 2019-05-09 15:25:08,302 easyblock.py:2785 INFO Running method reset_env part of step ready
  39. == 2019-05-09 15:25:08,303 easyblock.py:2785 INFO Running method handle_iterate_opts part of step ready
  40. == 2019-05-09 15:25:08,303 build_log.py:252 INFO unpacking...
  41. == 2019-05-09 15:25:08,303 easyblock.py:2779 INFO Starting source step
  42. == 2019-05-09 15:25:08,303 easyblock.py:2785 INFO Running method checksum_step part of step source
  43. == 2019-05-09 15:25:08,403 easyblock.py:1782 INFO Checksum verification for /apps/gent/source/t/Trim_Galore/0.6.0.tar.gz using f374dfa4c94e2ad50c63276dda0f341fd95b29cb1d5a0e2ad56e8b0168b758ec passed.
  44. == 2019-05-09 15:25:08,403 easyblock.py:2785 INFO Running method extract_step part of step source
  45. == 2019-05-09 15:25:08,403 easyblock.py:1850 INFO Unpacking source 0.6.0.tar.gz
  46. == 2019-05-09 15:25:08,404 run.py:141 INFO Auto-enabling streaming output of 'tar xzf /apps/gent/source/t/Trim_Galore/0.6.0.tar.gz' command because logging to stdout is enabled
  47. == 2019-05-09 15:25:08,404 run.py:192 INFO running cmd: tar xzf /apps/gent/source/t/Trim_Galore/0.6.0.tar.gz
  48. == 2019-05-09 15:25:08,624 build_log.py:252 INFO patching...
  49. == 2019-05-09 15:25:08,625 easyblock.py:2779 INFO Starting patch step
  50. == 2019-05-09 15:25:08,625 easyblock.py:2785 INFO Running method patch_step part of step patch
  51. == 2019-05-09 15:25:08,625 build_log.py:252 INFO preparing...
  52. == 2019-05-09 15:25:08,625 easyblock.py:2779 INFO Starting prepare step
  53. == 2019-05-09 15:25:08,626 easyblock.py:2785 INFO Running method prepare_step part of step prepare
  54. == 2019-05-09 15:25:09,291 build_log.py:163 ERROR EasyBuild crashed with an error (at ?:124 in __init__): Missing modules for dependencies (use --robot?): Perl/5.28.0-GCCcore-7.3.0 (at easybuild/tools/toolchain/toolchain.py:420 in _check_dependencies)
  55. == 2019-05-09 15:25:09,293 easyblock.py:3029 WARNING build failed (first 300 chars): Missing modules for dependencies (use --robot?): Perl/5.28.0-GCCcore-7.3.0
  56. == 2019-05-09 15:25:09,293 easyblock.py:294 INFO Closing log for application name Trim_Galore version 0.6.0
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