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misnomer001

Barcin_C

misnomer001
Feb 18th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. S1: anatolia
  5. indivname: anatolia.ind
  6. snpname: anatolia.snp
  7. genotypename: anatolia.geno
  8. popleft: left
  9. popright: right
  10. details: YES
  11. allsnps: YES
  12. inbreed: NO
  13. ## qpAdm version: 1520
  14. seed: 1870854034
  15. inbreed set NO
  16. inbreed set NO
  17. tmp: /tmp/fsx.4091
  18.  
  19. left pops:
  20. Turkey_C
  21. Turkey_N
  22. Armenia_EBA_KuraAraxes
  23.  
  24. right pops:
  25. Mbuti.DG
  26. ONG.SG
  27. EHG
  28. CHG
  29. England_Mesolithic
  30. Morocco_Iberomaurusian
  31. IVC
  32. WSHG
  33. Tarim_EMBA1
  34. Mongolia_North_N
  35. Turkey_Epipaleolithic
  36. Iran_GanjDareh_N
  37. PPN
  38. Russia_Steppe_Eneolithic
  39.  
  40. codimension 1
  41. f4info:
  42. f4rank: 1 dof: 12 chisq: 20.286 tail: 0.0618723561 dofdiff: 14 chisqdiff: -20.286 taildiff: 1
  43. B:
  44. scale 1.000
  45. ONG.SG -0.011
  46. EHG -0.014
  47. CHG -0.992
  48. England_Mesolithic 0.737
  49. Morocco_Iberomaurusian 0.708
  50. IVC -0.756
  51. WSHG -0.517
  52. Tarim_EMBA1 -0.850
  53. Mongolia_North_N -0.111
  54. Turkey_Epipaleolithic 2.391
  55. Iran_GanjDareh_N -0.804
  56. PPN 1.626
  57. Russia_Steppe_Eneolithic -0.629
  58. A:
  59. scale 205.698
  60. Turkey_N 1.185
  61. Armenia_EBA_KuraAraxes -0.772
  62.  
  63.  
  64. full rank
  65. f4info:
  66. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 12 chisqdiff: 20.286 taildiff: 0.0618723561
  67. B:
  68. scale 170.149 221.984
  69. ONG.SG 0.045 0.084
  70. EHG -0.533 -0.885
  71. CHG -1.397 -0.019
  72. England_Mesolithic 0.627 -0.823
  73. Morocco_Iberomaurusian 0.431 -1.078
  74. IVC -1.002 0.109
  75. WSHG -0.846 -0.146
  76. Tarim_EMBA1 -1.122 0.176
  77. Mongolia_North_N -0.368 -0.370
  78. Turkey_Epipaleolithic 2.015 -2.600
  79. Iran_GanjDareh_N -0.768 0.683
  80. PPN 1.364 -1.693
  81. Russia_Steppe_Eneolithic -0.747 0.281
  82. A:
  83. scale 1.414 1.414
  84. Turkey_N 1.414 0.000
  85. Armenia_EBA_KuraAraxes 0.000 1.414
  86.  
  87.  
  88. best coefficients: 0.394 0.606
  89. totmean: 0.394 0.606
  90. boot mean: 0.394 0.606
  91. std. errors: 0.043 0.043
  92.  
  93. error covariance (* 1,000,000)
  94. 1876 -1876
  95. -1876 1876
  96.  
  97.  
  98. summ: Turkey_C 2 0.061872 0.394 0.606 1876 -1876 1876
  99.  
  100. fixed pat wt dof chisq tail prob
  101. 00 0 12 20.286 0.0618724 0.394 0.606
  102. 01 1 13 241.748 0 1.000 0.000
  103. 10 1 13 87.857 3.58604e-13 0.000 1.000
  104. best pat: 00 0.0618724 - -
  105. best pat: 10 3.58604e-13 chi(nested): 67.571 p-value for nested model: 2.03232e-16
  106.  
  107. coeffs: 0.394 0.606
  108.  
  109. ## dscore:: f_4(Base, Fit, Rbase, right2)
  110. ## genstat:: f_4(Base, Fit, right1, right2)
  111.  
  112. details: Turkey_N ONG.SG 0.000264 0.222681
  113. details: Armenia_EBA_KuraAraxes ONG.SG 0.000379 0.261911
  114. dscore: ONG.SG f4: 0.000334 Z: 0.265477
  115.  
  116. details: Turkey_N EHG -0.003133 -2.180047
  117. details: Armenia_EBA_KuraAraxes EHG -0.003987 -2.370707
  118. dscore: EHG f4: -0.003650 Z: -2.456897
  119.  
  120. details: Turkey_N CHG -0.008209 -6.488528
  121. details: Armenia_EBA_KuraAraxes CHG -0.000086 -0.053265
  122. dscore: CHG f4: -0.003289 Z: -2.389979
  123.  
  124. details: Turkey_N England_Mesolithic 0.003682 2.318736
  125. details: Armenia_EBA_KuraAraxes England_Mesolithic -0.003707 -2.012052
  126. dscore: England_Mesolithic f4: -0.000793 Z: -0.489915
  127.  
  128. details: Turkey_N Morocco_Iberomaurusian 0.002536 2.189708
  129. details: Armenia_EBA_KuraAraxes Morocco_Iberomaurusian -0.004857 -3.617151
  130. dscore: Morocco_Iberomaurusian f4: -0.001942 Z: -1.621982
  131.  
  132. details: Turkey_N IVC -0.005891 -5.296203
  133. details: Armenia_EBA_KuraAraxes IVC 0.000492 0.368097
  134. dscore: IVC f4: -0.002025 Z: -1.738930
  135.  
  136. details: Turkey_N WSHG -0.004973 -3.597580
  137. details: Armenia_EBA_KuraAraxes WSHG -0.000659 -0.394010
  138. dscore: WSHG f4: -0.002360 Z: -1.617956
  139.  
  140. details: Turkey_N Tarim_EMBA1 -0.006597 -4.745112
  141. details: Armenia_EBA_KuraAraxes Tarim_EMBA1 0.000792 0.470552
  142. dscore: Tarim_EMBA1 f4: -0.002121 Z: -1.434313
  143.  
  144. details: Turkey_N Mongolia_North_N -0.002162 -1.824184
  145. details: Armenia_EBA_KuraAraxes Mongolia_North_N -0.001668 -1.166916
  146. dscore: Mongolia_North_N f4: -0.001863 Z: -1.489505
  147.  
  148. details: Turkey_N Turkey_Epipaleolithic 0.011842 6.790908
  149. details: Armenia_EBA_KuraAraxes Turkey_Epipaleolithic -0.011711 -5.820810
  150. dscore: Turkey_Epipaleolithic f4: -0.002424 Z: -1.357803
  151.  
  152. details: Turkey_N Iran_GanjDareh_N -0.004515 -3.941018
  153. details: Armenia_EBA_KuraAraxes Iran_GanjDareh_N 0.003075 2.311692
  154. dscore: Iran_GanjDareh_N f4: 0.000082 Z: 0.069941
  155.  
  156. details: Turkey_N PPN 0.008017 6.428994
  157. details: Armenia_EBA_KuraAraxes PPN -0.007625 -5.093407
  158. dscore: PPN f4: -0.001457 Z: -1.120152
  159.  
  160. details: Turkey_N Russia_Steppe_Eneolithic -0.004389 -3.553549
  161. details: Armenia_EBA_KuraAraxes Russia_Steppe_Eneolithic 0.001267 0.878486
  162. dscore: Russia_Steppe_Eneolithic f4: -0.000963 Z: -0.758034
  163.  
  164. gendstat: Mbuti.DG ONG.SG 0.265
  165. gendstat: Mbuti.DG EHG -2.457
  166. gendstat: Mbuti.DG CHG -2.390
  167. gendstat: Mbuti.DG England_Mesolithic -0.490
  168. gendstat: Mbuti.DG Morocco_Iberomaurusian -1.622
  169. gendstat: Mbuti.DG IVC -1.739
  170. gendstat: Mbuti.DG WSHG -1.618
  171. gendstat: Mbuti.DG Tarim_EMBA1 -1.434
  172. gendstat: Mbuti.DG Mongolia_North_N -1.490
  173. gendstat: Mbuti.DG Turkey_Epipaleolithic -1.358
  174. gendstat: Mbuti.DG Iran_GanjDareh_N 0.070
  175. gendstat: Mbuti.DG PPN -1.120
  176. gendstat: Mbuti.DG Russia_Steppe_Eneolithic -0.758
  177. gendstat: ONG.SG EHG -2.535
  178. gendstat: ONG.SG CHG -2.434
  179. gendstat: ONG.SG England_Mesolithic -0.670
  180. gendstat: ONG.SG Morocco_Iberomaurusian -1.609
  181. gendstat: ONG.SG IVC -1.986
  182. gendstat: ONG.SG WSHG -1.783
  183. gendstat: ONG.SG Tarim_EMBA1 -1.747
  184. gendstat: ONG.SG Mongolia_North_N -1.896
  185. gendstat: ONG.SG Turkey_Epipaleolithic -1.461
  186. gendstat: ONG.SG Iran_GanjDareh_N -0.193
  187. gendstat: ONG.SG PPN -1.265
  188. gendstat: ONG.SG Russia_Steppe_Eneolithic -0.950
  189. gendstat: EHG CHG 0.222
  190. gendstat: EHG England_Mesolithic 1.726
  191. gendstat: EHG Morocco_Iberomaurusian 1.069
  192. gendstat: EHG IVC 1.190
  193. gendstat: EHG WSHG 0.973
  194. gendstat: EHG Tarim_EMBA1 1.211
  195. gendstat: EHG Mongolia_North_N 1.245
  196. gendstat: EHG Turkey_Epipaleolithic 0.629
  197. gendstat: EHG Iran_GanjDareh_N 2.555
  198. gendstat: EHG PPN 1.424
  199. gendstat: EHG Russia_Steppe_Eneolithic 2.018
  200. gendstat: CHG England_Mesolithic 1.478
  201. gendstat: CHG Morocco_Iberomaurusian 0.859
  202. gendstat: CHG IVC 0.959
  203. gendstat: CHG WSHG 0.562
  204. gendstat: CHG Tarim_EMBA1 0.729
  205. gendstat: CHG Mongolia_North_N 0.983
  206. gendstat: CHG Turkey_Epipaleolithic 0.443
  207. gendstat: CHG Iran_GanjDareh_N 2.521
  208. gendstat: CHG PPN 1.231
  209. gendstat: CHG Russia_Steppe_Eneolithic 1.707
  210. gendstat: England_Mesolithic Morocco_Iberomaurusian -0.699
  211. gendstat: England_Mesolithic IVC -0.773
  212. gendstat: England_Mesolithic WSHG -0.939
  213. gendstat: England_Mesolithic Tarim_EMBA1 -0.802
  214. gendstat: England_Mesolithic Mongolia_North_N -0.692
  215. gendstat: England_Mesolithic Turkey_Epipaleolithic -0.842
  216. gendstat: England_Mesolithic Iran_GanjDareh_N 0.543
  217. gendstat: England_Mesolithic PPN -0.425
  218. gendstat: England_Mesolithic Russia_Steppe_Eneolithic -0.112
  219. gendstat: Morocco_Iberomaurusian IVC -0.062
  220. gendstat: Morocco_Iberomaurusian WSHG -0.266
  221. gendstat: Morocco_Iberomaurusian Tarim_EMBA1 -0.116
  222. gendstat: Morocco_Iberomaurusian Mongolia_North_N 0.056
  223. gendstat: Morocco_Iberomaurusian Turkey_Epipaleolithic -0.269
  224. gendstat: Morocco_Iberomaurusian Iran_GanjDareh_N 1.467
  225. gendstat: Morocco_Iberomaurusian PPN 0.371
  226. gendstat: Morocco_Iberomaurusian Russia_Steppe_Eneolithic 0.702
  227. gendstat: IVC WSHG -0.254
  228. gendstat: IVC Tarim_EMBA1 -0.077
  229. gendstat: IVC Mongolia_North_N 0.140
  230. gendstat: IVC Turkey_Epipaleolithic -0.223
  231. gendstat: IVC Iran_GanjDareh_N 2.022
  232. gendstat: IVC PPN 0.438
  233. gendstat: IVC Russia_Steppe_Eneolithic 0.931
  234. gendstat: WSHG Tarim_EMBA1 0.197
  235. gendstat: WSHG Mongolia_North_N 0.356
  236. gendstat: WSHG Turkey_Epipaleolithic -0.032
  237. gendstat: WSHG Iran_GanjDareh_N 1.754
  238. gendstat: WSHG PPN 0.575
  239. gendstat: WSHG Russia_Steppe_Eneolithic 1.056
  240. gendstat: Tarim_EMBA1 Mongolia_North_N 0.198
  241. gendstat: Tarim_EMBA1 Turkey_Epipaleolithic -0.155
  242. gendstat: Tarim_EMBA1 Iran_GanjDareh_N 1.577
  243. gendstat: Tarim_EMBA1 PPN 0.423
  244. gendstat: Tarim_EMBA1 Russia_Steppe_Eneolithic 0.933
  245. gendstat: Mongolia_North_N Turkey_Epipaleolithic -0.303
  246. gendstat: Mongolia_North_N Iran_GanjDareh_N 1.553
  247. gendstat: Mongolia_North_N PPN 0.300
  248. gendstat: Mongolia_North_N Russia_Steppe_Eneolithic 0.687
  249. gendstat: Turkey_Epipaleolithic Iran_GanjDareh_N 1.350
  250. gendstat: Turkey_Epipaleolithic PPN 0.588
  251. gendstat: Turkey_Epipaleolithic Russia_Steppe_Eneolithic 0.798
  252. gendstat: Iran_GanjDareh_N PPN -1.154
  253. gendstat: Iran_GanjDareh_N Russia_Steppe_Eneolithic -0.890
  254. gendstat: PPN Russia_Steppe_Eneolithic 0.373
  255.  
  256. removing /tmp/fsx.4091
  257. ##end of qpAdm: 3.087 seconds cpu 0.778 Mbytes in use
  258.  
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