Friends & Fam
Father, Thomas Logan - Origin Dead
Saul Creed - Origin II Dead
Daken - UnCanny X-Force Dead. Since revived.
Moira MacTaggert - Hox/PoX Dead. A bunch of times. Since revived.
The Mongrels (Shadowstalker, Fire Knives, Saw Fist, Gunhawk, Cannon Foot) Wolverine Vol 4

Lovers
Rose - Mostly unrequited love, could have progressed eventually if she had not died. Dead
Silver Fox - Girlfriend first real love we know about (First in Wolverine 10) Dead
Janet – Girlfriend killed by Cyber pre WWI (Marvel Comic Presents/Blood Hungry) Dead
Mystique - It’s complicated. Left for dead. Since revived.
Seraph - An ex (Wolverine Origins Annual) Dead
Mary McKenna - Relationship back in the 30s(Uncanny X-Men) Dead
Catharine - Confirmed girlfriend during WWII. (I heart Marvel: My Mutant Heart) Dead
Atsuko – Lover at the end of WWII (Wolverine: Logan) Dead
Rita Hayworth - Brief interlude in a bathroom. (Wolverine/Hercules: Myths, Monsters & Mutants) Dead
Abilene - One night stand in Chicago sometime after WWII - (WWH: Capt. America vs Wolverine) Dead
Rose Carling - Long time off and on relationship as part of LL&L (Wolverine) Dead
Lin Sun - Girlfriend back in the 50s in San Francisco. (Manifest Destiny) Dead
Itsu – Wife and mother of Daken. (Wolverine/Wolverine: Origins) Dead
Katrina McCann - One night stand back in the 60s (Under the Boardwalk) Dead
Charlemagne - Fellow spy and lover (Spider Man vs Wolverine) Dead
Ai Chia Wong - Girlfriend during his time in China. Breaks up with him after he kills her father's murderer (Wolverine) Dead
Mariko Yashida – Girlfriend and fiancée (Uncanny X-Men) Dead
Caley Blair – Girlfriend killed under NYC (Wolverine/Punisher Revelations) Dead
Amir (Atlantean Woman) – Newish relationship (Wolverine) Dead
Skrul-ektra (Pagon) - Recently confirmed one night stand in Dark Reign: Elektra. Dead
Dolores Downing - Unknown woman that he had a child with in the distant past. (Wolverine 15) Dead
Jean Grey - Pre & Post DPS incarnations. Dead