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misnomer001

steppe eneolithic geoksyur fail

misnomer001
Feb 17th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 2073650516
  4. read 1073741824 bytes
  5. read 1339052118 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. Steppe_Eneolithic
  11. Georgia_Kotias.SG
  12. Geoksyur_EN
  13. Russia_Khvalynsk_EN
  14.  
  15. right pops:
  16. Russia_MA1_HG
  17. WEHG
  18. WSHG
  19. EEHG
  20. Anatolia_N
  21. Russia_Shamanka_EN.SG
  22. Georgia_Satsurblia.SG
  23. Ganj_Dareh_N
  24. Onge.DG
  25. PPN
  26.  
  27. 0 Steppe_Eneolithic 3
  28. 1 Georgia_Kotias.SG 1
  29. 2 Geoksyur_EN 21
  30. 3 Russia_Khvalynsk_EN 3
  31. 4 Russia_MA1_HG 1
  32. 5 WEHG 36
  33. 6 WSHG 3
  34. 7 EEHG 5
  35. 8 Anatolia_N 23
  36. 9 Russia_Shamanka_EN.SG 10
  37. 10 Georgia_Satsurblia.SG 1
  38. 11 Ganj_Dareh_N 8
  39. 12 Onge.DG 2
  40. 13 PPN 8
  41. jackknife block size: 0.050
  42. snps: 1150461 indivs: 125
  43. number of blocks for block jackknife: 552
  44. ## ncols: 1150461
  45. coverage: Steppe_Eneolithic 1017729
  46. coverage: Georgia_Kotias.SG 1149097
  47. coverage: Geoksyur_EN 1018577
  48. coverage: Russia_Khvalynsk_EN 758497
  49. coverage: Russia_MA1_HG 805960
  50. coverage: WEHG 1141246
  51. coverage: WSHG 858019
  52. coverage: EEHG 1052093
  53. coverage: Anatolia_N 1136560
  54. coverage: Russia_Shamanka_EN.SG 1149998
  55. coverage: Georgia_Satsurblia.SG 801311
  56. coverage: Ganj_Dareh_N 1057358
  57. coverage: Onge.DG 1120748
  58. coverage: PPN 835499
  59. dof (jackknife): 468.103
  60. numsnps used: 1150461
  61. codimension 1
  62. f4info:
  63. f4rank: 2 dof: 7 chisq: 17.427 tail: 0.014838213 dofdiff: 9 chisqdiff: -17.427 taildiff: 1
  64. B:
  65. scale 1.000 1.000
  66. WEHG 0.029 -0.628
  67. WSHG -0.370 0.007
  68. EEHG -0.560 -0.652
  69. Anatolia_N 1.133 0.333
  70. Russia_Shamanka_EN.SG 0.757 0.043
  71. Georgia_Satsurblia.SG 1.492 -1.949
  72. Ganj_Dareh_N 1.574 1.865
  73. Onge.DG 0.914 0.356
  74. PPN 1.073 0.813
  75. A:
  76. scale 331.942 1309.753
  77. Georgia_Kotias.SG 1.336 -1.231
  78. Geoksyur_EN 0.859 1.211
  79. Russia_Khvalynsk_EN -0.691 -0.140
  80.  
  81.  
  82. full rank
  83. f4info:
  84. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 7 chisqdiff: 17.427 taildiff: 0.014838213
  85. B:
  86. scale 233.578 314.886 534.550
  87. WEHG 0.275 -0.061 0.257
  88. WSHG -0.263 -0.225 0.546
  89. EEHG -0.244 -0.525 0.952
  90. Anatolia_N 1.041 1.077 -1.204
  91. Russia_Shamanka_EN.SG 0.847 0.775 -0.583
  92. Georgia_Satsurblia.SG 1.973 0.785 -1.323
  93. Ganj_Dareh_N 1.229 1.990 -1.541
  94. Onge.DG 0.891 0.968 -0.779
  95. PPN 0.894 1.182 -1.100
  96. A:
  97. scale 1.732 1.732 1.732
  98. Georgia_Kotias.SG 1.732 0.000 0.000
  99. Geoksyur_EN 0.000 1.732 0.000
  100. Russia_Khvalynsk_EN 0.000 0.000 1.732
  101.  
  102.  
  103. best coefficients: 0.162 0.234 0.604
  104. Jackknife mean: 0.161345610 0.234636839 0.604017551
  105. std. errors: 0.032 0.033 0.016
  106.  
  107. error covariance (* 1,000,000)
  108. 1043 -915 -128
  109. -915 1059 -143
  110. -128 -143 271
  111.  
  112.  
  113. summ: Steppe_Eneolithic 3 0.014838 0.161 0.235 0.604 1043 -915 -128 1059 -143 ...
  114. 271
  115.  
  116. fixed pat wt dof chisq tail prob
  117. 000 0 7 17.427 0.0148382 0.162 0.234 0.604
  118. 001 1 8 361.077 0 8.907 -7.907 0.000 infeasible
  119. 010 1 8 60.044 4.56902e-10 0.369 0.000 0.631
  120. 100 1 8 42.527 1.07741e-06 0.000 0.373 0.627
  121. 011 2 9 672.160 0 1.000 0.000 0.000
  122. 101 2 9 1094.098 0 0.000 1.000 0.000
  123. 110 2 9 437.954 0 0.000 0.000 1.000
  124. best pat: 000 0.0148382 - -
  125. best pat: 100 1.07741e-06 chi(nested): 25.100 p-value for nested model: 5.44325e-07
  126. best pat: 110 1.07704e-88 chi(nested): 395.426 p-value for nested model: 5.45207e-88
  127.  
  128. coeffs: 0.162 0.234 0.604
  129.  
  130. ## dscore:: f_4(Base, Fit, Rbase, right2)
  131. ## genstat:: f_4(Base, Fit, right1, right2)
  132.  
  133. details: Georgia_Kotias.SG WEHG 0.001177 2.879533
  134. details: Geoksyur_EN WEHG -0.000192 -0.703752
  135. details: Russia_Khvalynsk_EN WEHG 0.000480 1.455772
  136. dscore: WEHG f4: 0.000436 Z: 1.684428
  137.  
  138. details: Georgia_Kotias.SG WSHG -0.001127 -2.917129
  139. details: Geoksyur_EN WSHG -0.000714 -2.644332
  140. details: Russia_Khvalynsk_EN WSHG 0.001022 3.503549
  141. dscore: WSHG f4: 0.000267 Z: 1.137638
  142.  
  143. details: Georgia_Kotias.SG EEHG -0.001045 -2.509926
  144. details: Geoksyur_EN EEHG -0.001669 -6.110032
  145. details: Russia_Khvalynsk_EN EEHG 0.001780 6.123268
  146. dscore: EEHG f4: 0.000515 Z: 2.175202
  147.  
  148. details: Georgia_Kotias.SG Anatolia_N 0.004456 10.798006
  149. details: Geoksyur_EN Anatolia_N 0.003421 11.605305
  150. details: Russia_Khvalynsk_EN Anatolia_N -0.002253 -6.853510
  151. dscore: Anatolia_N f4: 0.000163 Z: 0.611110
  152.  
  153. details: Georgia_Kotias.SG Russia_Shamanka_EN.SG 0.003625 8.483569
  154. details: Geoksyur_EN Russia_Shamanka_EN.SG 0.002461 8.525423
  155. details: Russia_Khvalynsk_EN Russia_Shamanka_EN.SG -0.001090 -3.396784
  156. dscore: Russia_Shamanka_EN.SG f4: 0.000505 Z: 1.949504
  157.  
  158. details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.008446 17.750765
  159. details: Geoksyur_EN Georgia_Satsurblia.SG 0.002492 7.640042
  160. details: Russia_Khvalynsk_EN Georgia_Satsurblia.SG -0.002475 -7.563010
  161. dscore: Georgia_Satsurblia.SG f4: 0.000457 Z: 1.678780
  162.  
  163. details: Georgia_Kotias.SG Ganj_Dareh_N 0.005263 11.681579
  164. details: Geoksyur_EN Ganj_Dareh_N 0.006318 20.182824
  165. details: Russia_Khvalynsk_EN Ganj_Dareh_N -0.002883 -9.179739
  166. dscore: Ganj_Dareh_N f4: 0.000591 Z: 2.280501
  167.  
  168. details: Georgia_Kotias.SG Onge.DG 0.003813 8.103099
  169. details: Geoksyur_EN Onge.DG 0.003075 10.031333
  170. details: Russia_Khvalynsk_EN Onge.DG -0.001457 -4.259387
  171. dscore: Onge.DG f4: 0.000458 Z: 1.626457
  172.  
  173. details: Georgia_Kotias.SG PPN 0.003828 9.659627
  174. details: Geoksyur_EN PPN 0.003754 12.611560
  175. details: Russia_Khvalynsk_EN PPN -0.002057 -6.458568
  176. dscore: PPN f4: 0.000257 Z: 0.997504
  177.  
  178. gendstat: Russia_MA1_HG WEHG 1.684
  179. gendstat: Russia_MA1_HG WSHG 1.138
  180. gendstat: Russia_MA1_HG EEHG 2.175
  181. gendstat: Russia_MA1_HG Anatolia_N 0.611
  182. gendstat: Russia_MA1_HG Russia_Shamanka_EN.SG 1.950
  183. gendstat: Russia_MA1_HG Georgia_Satsurblia.SG 1.679
  184. gendstat: Russia_MA1_HG Ganj_Dareh_N 2.281
  185. gendstat: Russia_MA1_HG Onge.DG 1.626
  186. gendstat: Russia_MA1_HG PPN 0.998
  187. gendstat: WEHG WSHG -0.727
  188. gendstat: WEHG EEHG 0.429
  189. gendstat: WEHG Anatolia_N -1.850
  190. gendstat: WEHG Russia_Shamanka_EN.SG 0.372
  191. gendstat: WEHG Georgia_Satsurblia.SG 0.087
  192. gendstat: WEHG Ganj_Dareh_N 0.795
  193. gendstat: WEHG Onge.DG 0.101
  194. gendstat: WEHG PPN -0.988
  195. gendstat: WSHG EEHG 1.154
  196. gendstat: WSHG Anatolia_N -0.427
  197. gendstat: WSHG Russia_Shamanka_EN.SG 1.020
  198. gendstat: WSHG Georgia_Satsurblia.SG 0.684
  199. gendstat: WSHG Ganj_Dareh_N 1.306
  200. gendstat: WSHG Onge.DG 0.718
  201. gendstat: WSHG PPN -0.041
  202. gendstat: EEHG Anatolia_N -1.660
  203. gendstat: EEHG Russia_Shamanka_EN.SG -0.044
  204. gendstat: EEHG Georgia_Satsurblia.SG -0.212
  205. gendstat: EEHG Ganj_Dareh_N 0.331
  206. gendstat: EEHG Onge.DG -0.222
  207. gendstat: EEHG PPN -1.167
  208. gendstat: Anatolia_N Russia_Shamanka_EN.SG 1.992
  209. gendstat: Anatolia_N Georgia_Satsurblia.SG 1.299
  210. gendstat: Anatolia_N Ganj_Dareh_N 2.675
  211. gendstat: Anatolia_N Onge.DG 1.488
  212. gendstat: Anatolia_N PPN 0.635
  213. gendstat: Russia_Shamanka_EN.SG Georgia_Satsurblia.SG -0.199
  214. gendstat: Russia_Shamanka_EN.SG Ganj_Dareh_N 0.480
  215. gendstat: Russia_Shamanka_EN.SG Onge.DG -0.264
  216. gendstat: Russia_Shamanka_EN.SG PPN -1.259
  217. gendstat: Georgia_Satsurblia.SG Ganj_Dareh_N 0.583
  218. gendstat: Georgia_Satsurblia.SG Onge.DG 0.004
  219. gendstat: Georgia_Satsurblia.SG PPN -0.785
  220. gendstat: Ganj_Dareh_N Onge.DG -0.657
  221. gendstat: Ganj_Dareh_N PPN -1.768
  222. gendstat: Onge.DG PPN -0.924
  223.  
  224. ##end of qpAdm: 241.094 seconds cpu 1256.829 Mbytes in use
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