ImportT1MRI_without_manual_database_creation_prior

darasan@imecas08:~$ singularity shell --bind /home/homeGlobal/darasan/sbr85:/mnt2,${morphologist_singularity_scripts}:/mnt3 ${morphologist_singularity_image}
Singularity: Invoking an interactive shell within container...

Singularity brainvisa_4_6_0_xenial_updatedb_cmdline-2018-11-20-15fd7d8e3095.simg:~> bash /mnt3/import.sh /home/homeGlobal/darasan/test_subj 100206_1-T1w_acpc_dc_restore_1mm.nii.gz
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ IMPORTING 100206_1-T1w_acpc_dc_restore_1mm
DATABASE MOUNTED /mnt2
SUBJECT NIFTI DIR MOUNTED /home/homeGlobal/darasan/test_subj
SUBJECT NIFTI FILE NAME 100206_1-T1w_acpc_dc_restore_1mm.nii.gz
SUBJECT NIFTI PREFIX 100206_1-T1w_acpc_dc_restore_1mm
Loading toolbox cortical_surface
Loading toolbox data management
Loading toolbox datamind
Loading toolbox freesurfer
Loading toolbox morphologist
Loading toolbox spm
Loading toolbox structural_analysis
Loading toolbox tools
Loading toolbox viewers
Loading toolbox My processes
The log file for this session is
'/home/homeGlobal/darasan/.brainvisa/brainvisa2.log'
Headless Anatomist running in normal (non-headless) mode
exec: /home/brainvisauser/brainvisa-4.6.0/brainvisa/toolboxes/morphologist/startup.py

Process Import T1 MRI started on 2018/11/22 07:49
filein  : /tmp/tmpsqBQ2M.nii.gz
fileout : /mnt2/subjects/100206_1-T1w_acpc_dc_restore_1mm/t1mri/default_acquisition/100206_1-T1w_acpc_dc_restore_1mm.nii.gz
encoding: Binary
normal  : 0
rescale : 1
format  :
type    : S16
objtype :
xdim    : 0
ydim    : 0
zdim    : 0
imin    : default
imax    : default
omin    : 0
omax    : 4095
reading /tmp/tmpsqBQ2M.nii.gz as Volume / FLOAT...
reading done
convert to Volume / S16
converting data...
convert done
writing /mnt2/subjects/100206_1-T1w_acpc_dc_restore_1mm/t1mri/default_acquisition/100206_1-T1w_acpc_dc_restore_1mm.nii.gz...
done
Process Import T1 MRI finished on 2018/11/22 07:49 (4 seconds)
Singularity brainvisa_4_6_0_xenial_updatedb_cmdline-2018-11-20-15fd7d8e3095.simg:~> ls /mnt2
subjects
Singularity brainvisa_4_6_0_xenial_updatedb_cmdline-2018-11-20-15fd7d8e3095.simg:~> ls /mnt2/*
100206_1-T1w_acpc_dc_restore_1mm
Singularity brainvisa_4_6_0_xenial_updatedb_cmdline-2018-11-20-15fd7d8e3095.simg:~> ls /mnt2/*/*
t1mri
Singularity brainvisa_4_6_0_xenial_updatedb_cmdline-2018-11-20-15fd7d8e3095.simg:~> ls /mnt2/*/*/*
default_acquisition